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Archive for the ‘Bio Instrumentation in Experimental Life Sciences Research’ Category

The Vibrant Philly Biotech Scene: Focus on Computer-Aided Drug Design and Gfree Bio, LLC

Curator: Stephen J. Williams, Ph.D.

Article ID #166: The Vibrant Philly Biotech Scene: Focus on Computer-Aided Drug Design and Gfree Bio, LLC. Published on 2/10/2015

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This post is the second in a series of posts highlighting interviews with Philadelphia area biotech startup CEO’s and show how a vibrant biotech startup scene is evolving in the city as well as the Delaware Valley area. Philadelphia has been home to some of the nation’s oldest biotechs including Cephalon, Centocor, hundreds of spinouts from a multitude of universities as well as home of the first cloned animal (a frog), the first transgenic mouse, and Nobel laureates in the field of molecular biology and genetics. Although some recent disheartening news about the fall in rankings of Philadelphia as a biotech hub and recent remarks by CEO’s of former area companies has dominated the news, biotech incubators like the University City Science Center and Bucks County Biotechnology Center as well as a reinvigorated investment community (like PCCI and MABA) are bringing Philadelphia back. And although much work is needed to bring the Philadelphia area back to its former glory days (including political will at the state level) there are many bright spots such as the innovative young companies as outlined in these posts.

efavirenz_med-2In today’s post, I had the opportunity to talk with molecular modeler Charles H. Reynolds, Ph.D., founder and CEO of Gfree Bio LLC, a computational structure-based design and modeling company based in the Pennsylvania Biotech Center of Bucks County. Gfree is actually one of a few molecular modeling companies at the Bucks County Biotech Center (I highlighted another company RabD Biotech which structural computational methods to design antibody therapeutics).

Below is the interview with Dr. Reynolds of Gfree Bio LLC and Leaders in Pharmaceutical Business Intelligence (LPBI):

LPBI: Could you briefly explain, for non-molecular modelers, your business and the advantages you offer over other molecular modeling programs (either academic programs or other biotech companies)? As big pharma outsources more are you finding that your company is filling a needed niche market?

GfreeBio: Gfree develops and deploys innovative computational solutions to accelerate drug discovery. We can offer academic labs a proven partner for developing SBIR/STTR proposals that include a computational or structure-based design component. This can be very helpful in developing a successful proposal. We also provide the same modeling and structure-based design input for small biotechs that do not have these capabilities internally. Working with Gfree is much more cost-effective than trying to develop these capabilities internally. We have helped several small biotechs in the Philadelphia region assess their modeling needs and apply computational tools to advance their discovery programs. (see publication and collaboration list here).

LPBI: Could you offer more information on the nature of your 2014 STTR award?

GfreeBio: Gfree has been involved in three successful SBIR/STTR awards in 2014.   I am the PI for an STTR with Professor Burgess of Texas A&M that is focused on new computational and synthetic approaches to designing inhibitors for protein-protein interactions. Gfree is also collaborating with the Wistar Institute and Phelix Therapeutics on two other Phase II proposals in the areas of oncology and infectious disease.

LPBI: Why did you choose the Bucks County Pennsylvania Biotechnology Center?

GfreeBio: I chose to locate my company at the Biotech Center because it is a regional hub for small biotech companies and it provides a range of shared resources that are very useful to the company. Many of my most valuable collaborations have resulted from contacts at the center.

LPBI: The Blumberg Institute and Natural Products Discovery Institute has acquired a massive phytochemical library. How does this resource benefit the present and future plans for GfreeBio?

GfreeBio: To date Gfree Bio has not been an active collaborator with the Natural Products Insititute, but I have a good relationship with the Director and that could change at any time.

LPBI: Was the state of Pennsylvania and local industry groups support GfreeBio’s move into the Doylestown incubator? Has the partnership with Ben Franklin Partners and the Center provided you with investment and partnership opportunities?

GfreeBio: Gfree Bio has not been actively seeking outside investors, at least to date. We have been focused on growing the company through collaborations and consulting relationships. However, we have benefitted from being part of the Keystone Innovation Zone, a state program that provides incentives for small technology-based businesses in Pennsylvania.

LPBI: You will be speaking at a conference in the UK on reinventing the drug discovery process through tighter collaborations between biotech, academia, and non-profit organizations.  How do you feel the Philadelphia area can increase this type of collaboration to enhance not only the goals and missions of nonprofits, invigorate the Pennsylvania biotech industry, but add much needed funding to the local academic organizations?

GfreeBio: I think this type of collaboration across sectors appears to be one of the most important emerging models for drug discovery.   The Philadelphia region has been in many ways hard hit by the shift of drug discovery from large vertically integrated pharmaceutical companies to smaller biotechs, since this area was at the very center of “Big Pharma.” But I think the region is bouncing back as it shifts more to being a center for biotech. The three ingredients for success in the new pharma model are great universities, a sizeable talent pool, and access to capital. The last item may be the biggest challenge locally. The KIZ program (Keystone Innovation Zone) is a good start, but the region and state could do more to help promote innovation and company creation. Some other states are being much more aggressive.

LPBI: In addition, the Pennsylvania Biotechnology Center in Bucks County appears to have this ecosystem: nonprofit organizations, biotechs, and academic researchers. Does this diversity of researchers/companies under one roof foster the type of collaboration needed, as will be discussed at the UK conference? Do you feel collaborations which are in close physical proximity are more effective and productive than a “virtual-style” (online) collaboration model? Could you comment on some of the collaborations GfreeBio is doing with other area biotechs and academics?

GfreeBio: I do think the “ecosystem” at the Pennsylvania Biotechnology Center is important in fostering new innovative companies. It promotes collaborations that might not happen otherwise, and I think close proximity is always a big plus. As I mentioned before, many of the current efforts of Gfree have come from contacts at the center.   This includes SBIR/STTR collaborations and contract work for local small biotech companies.

LPBI: Thompson Reuters just reported that China’s IQ (Innovation Quotient) has risen dramatically with the greatest patents for pharmaceuticals and compounds from natural products. Have you or your colleagues noticed more competition or business from Chinese pharmaceutical companies?

GfreeBio: The rise of Asia, particularly China, has been one of the most significant recent trends in the pharmaceutical industry. Initially, this was almost exclusively in the CRO space, but now China is aggressively building a fully integrated domestic pharmaceutical industry.

LPBI: How can the Philadelphia ecosystem work closer together to support greater innovation?

GfreeBio: A lot has happened in recent years to promote innovation and company creation in the region. There could always be more opportunities for networking and collaboration within the Philadelphia community. Of course the biggest obstacle in this business is often financing. Philadelphia needs more public and private sources for investment in startups.

LPBI: Thank you Dr. Reynolds.

Please look for future posts in this series on the Philly Biotech Scene on this site

Also, if you would like your Philadelphia biotech startup to be highlighted in this series please contact me: sjwilliamspa@comcast.net or @StephenJWillia2.
Our site is read by ~ 570,000 readers, among them thousand international readers daily and followed by thousands of Twitter followers.

 

Other posts on this site in this VIBRANT PHILLY BIOTECH SCENE SERIES OR referring to PHILADELPHIA BIOTECH include:

RAbD Biotech Presents at 1st Pitch Life Sciences-Philadelphia

The Vibrant Philly Biotech Scene: Focus on Vaccines and Philimmune, LLC

What VCs Think about Your Pitch? Panel Summary of 1st Pitch Life Science Philly

1st Pitch Life Science- Philadelphia- What VCs Really Think of your Pitch

LytPhage Presents at 1st Pitch Life Sciences-Philadelphia

Hastke Inc. Presents at 1st Pitch Life Sciences-Philadelphia

PCCI’s 7th Annual Roundtable “Crowdfunding for Life Sciences: A Bridge Over Troubled Waters?” May 12 2014 Embassy Suites Hotel, Chesterbrook PA 6:00-9:30 PM

Pfizer Cambridge Collaborative Innovation Events: ‘The Role of Innovation Districts in Metropolitan Areas to Drive the Global an | Basecamp Business

Mapping the Universe of Pharmaceutical Business Intelligence: The Model developed by LPBI and the Model of Best Practices LLC

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Larry H. Bernstein, MD, FCAP, Author and Curator

Leaders in Pharmaceutical Innovation

Introduction

This contribution to a series of articles on the history of physiology, biochemistry, molecular biology, and medicine, examines several instances of conserved proteins over perhaps millions of years and across species of eukaryotes.  These findings appear to be unique in some respects within certain specific areas of scientific investigation, but while the accuracy of this observation might perhaps be open to challenge, the clarification of these observations should open up and enrich our understanding of biological function.

Conversations with Jose Eduardo des Salles Rosalino raised this question? How is it that developments late in the 20th century diverted the attention of biological processes from a dynamic construct involving interacting chemical reactions under rapidly changing external conditions effecting tissues and cell function to a rigid construct that is determined unilaterally by the genome construct, diverting attention from mechanisms essential for seeing the complete cellular construct?

He calls attention to the article titled Neo -Darwinism, The Modern Synthesis and Selfish Genes that bares no relationship with Physiology with Molecular Biology J. Physiol 2011; 589(5): 1007-11 by Denis Noble. Further, he identifies it as the key factor required in order to understand the dislodgement of physiology as the foundation of medical reasoning. This is because of the near unilateral emphasis of genomic activity as a determinant of cellular. The DNA to protein link goes from triplet sequence to amino acid sequence. That is the realm of genetics. However, protein conformation, activity and function requires that environmental and micro-environmental factors should be considered (Biochemistry). If that were not the case, we have no way to bridge the gap between the genetic code and the evolution of cells, tissues, organs, and organisms.

He continues with this example.  I would like to stress in the cAMP coupled hormonal response, the transfer of conformation from protein to protein is paramount. For instance, if your scheme goes beyond cAMP, it will show an effect over a self-assembly (inhibitor protein and protein kinase). This effect is not in any way determined by the translation of the genetic code. It is an energetic homeostatic response. Most important, sequence alone does not explain conformation, activity and function of regulatory proteins.  If this important mechanism was not ignored, the work of S Prusiner would be easily understood. For, self-assembly versus change in covalent modification of proteins (see R. A Kahn and A. G Gilman 1984 J. Biol. Chem. v. 259,n 10 pp6235-6240.) In this case, trimeric or dimeric G does not matter.” Signaling transduction tutorial”.

We know that proteins have primary, secondary, and tertiary structure. The primary structure is transcribed from the genetic code. The secondary structure constitutes the first level of protein folding. It is stabilized by strong interactions between side chains of neighboring amino acids, and it consists of the linear sequence of amino acids connected by peptide linkages. Altering a single amino acid is associated with a gene mutation, which might result in a non-functioning protein. The secondary structure  is primarily responsible for lining up the active site residues within a protein structure, and it is stabilized by a few, but very strong disulfide bonds between adjacent cysteine amino acids within the polypeptide chains.

The coiling or folding of a polypeptide chain gives the protein its 3-D shape. The alpha (α) helix structure resembles a coiled spring and is secured by hydrogen bonding in the polypeptide chain. The beta (β) pleated sheet is a structure that appears to be folded or pleated and is held together by hydrogen bonding between polypeptide units of the folded chain that lie adjacent to one another.  The 3-D structure of the polypeptide chain of a protein is determined by several types of bonds and forces that hold a protein in its tertiary structure. Hydrophobic interactions greatly contribute to the folding and shaping of a protein. The “R” group of the amino acid is either hydrophobic or hydrophilic, which in effect either causes the “R” to avoid water and pull into the center of the molecule, or alternatively, to seek contact with water.  Due to protein folding, ionic bonding can occur between the positively and negatively charged “R” groups that come in close contact with one another. Folding can also result in covalent bonding between the “R” groups of cysteine amino acids. This type of bonding forms what is called a disulfide bridge. Interactions called van der Waals forces also assist in the stabilization of protein structure. These interactions pertain to the attractive and repulsive forces that occur between molecules that become polarized. These forces contribute to the bonding that occurs between molecules.

Quaternary structure  refers to the structure of a protein macromolecule formed by interactions between multiple polypeptide chains. Each polypeptide chain is referred to as a subunit. Proteins with quaternary structure may consist of more than one of the same or different type of protein subunit. This is common for catalytical enzymes and for plasma circulating transport proteins.  It is also consequential for physiological and pathophysiological events. Typical examples are hemoglobin and transthyretin.

Self-assembly is a phenomenon where the components of a system assemble themselves spontaneously via an interaction to form a larger functional unit. This spontaneous organization can be due to direct specific interaction and/or indirectly through their environment. The spatial arrangements of these self-assembled molecules can be potentially used to build increasingly complex structures. Some properties of atoms and molecules enable them to arrange themselves into patterns.

Self-assembly is an equilibrium process where the assembled components are in equilibrium with the individual components. Self-assembly is driven by the minimization of Gibbs free energy. The minimization of Gibbs free energy is attained by the minimization of repulsive and the maximization of attractive molecular interactions. In addition, the lower free energy is usually a result of a weaker intermolecular force between self-assembled moieties and is essentially enthalpic in nature.

The thermodynamics of the self-assembly process can be represented by a simple Gibbs free energy equation:

\Delta G_{SA} = \Delta H_{SA} -T \Delta S_{SA} \,

where if \Delta G_{SA} \, is negative, self-assembly is a spontaneous process. \Delta H_{SA} \, is the enthalpy change of the process and is largely determined by the potential energy/intermolecular forces between the assembling entities. \Delta S_{SA} \, is the change in entropy associated with the formation of the ordered arrangement. In general, the organization is accompanied by a decrease in entropy and in order for the assembly to be spontaneous the enthalpy term must be negative and in excess of the entropy term. This equation shows that as the value of T \Delta S_{SA} \, approaches the value of \Delta H_{SA} \, and above a critical temperature, the self-assembly process will become progressively less likely to occur and spontaneous self-assembly will not happen.

The self-assembly is governed by the normal processes of nucleation and growth. Small assemblies are formed because of their increased lifetime as the attractive interactions between the components lower the Gibbs free energy. As the assembly grows, the Gibbs free energy continues to decrease until the assembly becomes stable enough to last for a long period of time. The necessity of the self-assembly to be an equilibrium process is defined by the organization of the structure which requires non-ideal arrangements to be formed before the lowest energy configuration is found.

Intermolecular forces govern the particle interaction in self-assembled systems. The forces tend to be intermolecular in type rather than ionic or covalent because ionic or covalent bonds will “lock” the assembly into non-equilibrium structures. The types intermolecular forces seen in self-assembly processes are van der Waals, hydrogen bonds, and weak polar forces, just to name a few. In self-assembly, regular structural arrangements are frequently observed, therefore there must be a balance of attractive and repulsive between molecules otherwise an equilibrium distance will not exist between the particles. The repulsive forces can be electron cloud-electron cloud overlap or electrostatic repulsion.  (Wikipedia)

This description fits nicely into the intermolecular interactions between protein polypeptides in both tertiary and  quaternary structure. This principle is being utilized in the engineering of nanoparticles that will self-assemble for one or both of two reasons: molecular interactions and external direction. The assembly of nanoparticles of two different materials into a binary nanoparticle superlattice is a promising way of synthesizing a large variety of materials

Prions , Stanley B. Prusiner (PNAS 1998, Nov 10;  95(23):    13363–13383, http://dx.doi.org:/10.1073/pnas.95.23.13363

Prion diseases may present as genetic, infectious, or sporadic disorders, all of which involve modification of the prion protein (PrP). Prions are transmissible particles that are devoid of nucleic acid and seem to be composed exclusively of a modified protein (PrPSc). The normal, cellular PrP (PrPC) is converted into PrPSc through a posttranslational process during which it acquires a high β-sheet content. The species of a particular prion is encoded by the sequence of the chromosomal PrP gene of the mammals in which it last replicated. In contrast to pathogens carrying a nucleic acid genome, prions appear to encipher strain-specific properties in the tertiary structure of PrPSc. Transgenetic studies argue that PrPSc acts as a template upon which PrPC is refolded into a nascent PrPSc molecule through a process facilitated by another protein.

Miniprions generated in transgenic mice expressing PrP, in which nearly half of the residues were deleted, exhibit unique biological properties and should facilitate structural studies of PrPSc. Knowledge about prions has profound implications for studies of the structural plasticity of proteins.

Prusiner relates:

Libyan Jews living in Israel developed CJD about 30 times more frequently than other Israelis. This finding prompted some investigators to propose that the Libyan Jews had contracted CJD by eating lightly cooked brain from scrapie-infected sheep when they lived in Tripoli prior to emigration. Subsequently, the Libyan Jewish patients were all found to carry a mutation at codon 200 in their prion protein (PrP) gene.

I was beginning a residency in neurology in 1972 and was most impressed by a disease process that could kill my patient in 2 months by destroying her brain while her body remained unaffected by this process. No febrile response, no leukocytosis or pleocytosis, no humoral immune response, and yet I was told that she was infected with a “slow virus.” In scrapie, kuru, CJD, and all of the other disorders now referred to as prion diseases, spongiform degeneration and astrocytic gliosis is found upon microscopic examination of the CNS. The extent of reactive gliosis correlates with the degree of neuron loss.

neuropathologic changes with RML scrapie prions

neuropathologic changes with RML scrapie prions

Neuropathologic changes in Swiss mice after inoculation with RML scrapie prions.

In view of daunting logistical problems, the identification of an inoculum that produced scrapie in the golden Syrian hamster (SHa) in ≈70 days after intracerebral inoculation proved to be an important advance once an incubation time assay was developed.  It provided a means to assess quantitatively those fractions that were enriched for infectivity and those that were not. A protocol was developed for separating scrapie infectivity from most proteins and nucleic acids. With a ≈100-fold purification of infectivity relative to protein, >98% of the proteins and polynucleotides were eliminated, permitting more reliable probing of the constituents of these enriched fractions.

A particular macromolecule was required for infectivity and this macromolecule was a protein. The experimental findings extended earlier observations on resistance of scrapie infectivity to UV irradiation at 250 nm in that the four different procedures used to probe for a nucleic acid are based on physical principles that are independent of UV radiation damage. I defined prions as proteinaceous infectious particles that resist inactivation by procedures that modify nucleic acids.The best current working definition of a prion is a proteinaceous infectious particle that lacks nucleic acid, because a wealth of data supports the contention that scrapie prions are composed entirely of a protein that adopts an abnormal conformation. From a broader perspective, prions are elements that impart and propagate conformational variability.

JEDS continues with his observations about the uniqueness of the functional understanding of proteins. He refers to lessons derived from discussions with Leloir, and an imaginary dissertation by Schrodinger to Darlington and Haldane, the two distinguished biologists of their time.  His vision was that that biochemistry could provide two legs to support the advance of biology and medicine (one leg was for normal physiology and the other the solitary leg of molecular biology, for genetics). This view includes a chemical reactivity scenario that in Leloir´s vision on the subject, he considers to be of paramount importance. A chemical reaction point of view prevents any scientific supporting leg to be placed in an opposite   or wrong position as it is in the simple statement that ALL information in life moves from DNA, through RNA and to proteins.

Complex life forms have followed what we usually understand as evolution, variation and selection leading to new forms of life and old ones being extinct without a direct selective pressure upon its amount of DNA.  For the more complex life forms, neutral mutations would be very important in the evolution process than for bacteria. However, it also, may shed some new light upon the controversy of a small step in evolution as Charles Darwin proposed, and in addition, some more modern views that have indicated that abrupt changes might have occurred during the biological time line. Neutral evolution might have happened as small step evolution, as imagined by Darwin.  Only after a rather long period of time, and after a large series of neutral mutations, a new function, or a new phenotype appears after a last small step, the last neutral mutation.

A set of genes from both parents seems to be closer to the common ancestry of both parents than to either parent. These ancestral genes that are present may be expressed in complex living beings, are no longer present in modern microorganisms genomes as well as previous non-coding DNA. This last aspect of the genome makes clear the difference in evolution pathways of microorganisms in comparison with more complex forms of life.

Crystallins of the eye lens, cornea, and retina

Regulation of gene expression by Pax6 in ocular cells: a case of tissue-preferred expression of crystallins in lens
A Cvekl, Y Yang, BK Chauhan and K Cveklova
Int. J. Dev. Biol. 2004; 48: 829-844.  http://dx.doi.org:/10.1387/ijdb.041866ac

Lens development is an excellent model for genetic and biochemical studies of embryonic induction, cell cycle regulation, cellular differentiation and signal transduction. Differentiation of lens is characterized by lens-preferred expression and accumulation of water-soluble proteins, crystallins. Crystallins are required for light transparency, refraction and maintenance of lens integrity. Here, we review mechanisms of lens-preferred expression of crystallin genes by employing synergism between developmentally regulated DNA-binding transcription factors: Pax6, c-Maf, MafA/L-Maf, MafB, NRL, Sox2, Sox1, RARβ/RXRβ, RORα, Prox1, Six3, γFBP-B and HSF2. These factors are differentially expressed in lens precursor cells, lens epithelium and primary and secondary lens fibers. They exert their function in combination with ubiquitously expressed factors (e.g. AP-1, CREB, pRb, TFIID and USF) and co-activators/chromatin remodeling proteins (e.g. ASC-2 and CBP/p300). A special function belongs to Pax6, a paired domain and homeodomain-containing protein, which is essential for lens formation. Pax6 is expressed in lens progenitor cells before the onset of crystallin expression and it serves as an important regulatory factor required for expression of c-Maf, MafA/L-Maf, Six3, Prox1 and retinoic acid signaling both in lens precursor cells and the developing lens. The roles of these factors are illustrated by promoter studies of mouse αA-, αB-, γF- and guinea pig ζ-crystallins. Pax6 forms functional complexes with a number of transcription factors including the retinoblastoma protein, pRb, MafA, Mitf and Sox2. We present novel data showing that pRb antagonizes Pax6-mediated activation of the αA-crystallin promoter likely by inhibiting binding of Pax6 to DNA.

The transcription factor D-Pax2 regulates Crystallin production during eye development in Drosophila melanogaster
K Dziedzic, J Heaphy, H Prescott, and J Kavaler
Dev Dyn. 2009 Oct; 238(10): 2530–2539. http://dx.doi.org:/10.1002/dvdy.22082

The generation of a functioning Drosophila eye requires the coordinated differentiation of multiple cell types and the morphogenesis of eye-specific structures. Here we show that D-Pax2 plays a significant role in lens development through regulation of the Crystallin gene and that Crystallin is also expressed in D-Pax2+ cells in the external sensory organs. Loss of D-Pax2 function leads to loss of Crystallin expression in both eyes and bristles. A 2.3 kilobase upstream region of the Crystallin gene can drive GFP expression in the eye and is dependent on D-Pax2. In addition, D-Pax2 binds to an evolutionarily conserved site in this region which, by itself, is sufficient to drive GFP expression in the eye. However, mutation of this site does not greatly affect the regulatory region’s function. The data indicate that D-Pax2 acts to promote lens development by controlling the production of the major protein component of the lens. Whether this control is direct or indirect remains unresolved.

Cubozoan jellyfish: an Evo/Devo model for eyes and other sensory systems
J PIATIGORSKY, and Z KOZMIK
Int. J. Dev. Biol. 2004; 48: 719-729. http://dx.doi.org:/10.1387/ijdb.041851jp

Cnidaria are the most basal phylum containing a well-developed visual system located on specialized sensory structures (rhopalia) with eyes and statocyts. We have been exploring the cubozoan jellyfish, Tripedalia cystophora. In addition to containing simple photoreceptive ocelli, each rhopalium in Tridedalia has a large and small complex, camera-type eye with a cellular lens containing three distinct families of crystallins which apparently serve non-lenticular functions. Thus, Tridpedalia recruited crystallins by a gene sharing strategy as have mollusks and vertebrates. Tripedalia has a single Pax gene, PaxB, which encodes a structural and functional Pax 2/5/8-like paired domain as well as an octapeptide and Pax6-like homeodomain. PaxB binds to and activates Tripedalia crystallin promoters (especially J3-crystallin) and the Drosophila rhodopsin rh6 gene in transfection tests and induces ectopic eyes in Drosophila. In situ hybridization showed that PaxB and crystallin genes are expressed in the lens, retina and statocysts. We suggest from these results that an ancestral PaxB gene was a primordial gene in eye evolution and that eyes and ears (mechanoreceptors) may have had a common evolutionary origin. Thus, the numerous structural and molecular features of Tridpalia rhopalia indicate that ancient cubozoan jellyfish are fascinating models for evo/devo insights into eyes and other sensory systems.

aB-crystallin, a low-molecular-weight heat shock protein, acts as a regulator of platelet function
O. Kozawa, H. Matsuno, M. Niwa, D. Hatakeyama, K. Kato, and T. Uematsu
Cell Stress & Chaperones 2001; 6 (1): 21–28

It has recently been reported that aB-crystallin, a low-molecular-weight heat shock protein, may be released from cells by mechanical stretch. We investigated a physiological role of aB-crystallin in platelet function. aB-crystallin inhibited platelet aggregation induced by thrombin or botrocetin in hamsters and humans. These platelets had specific binding sites for aB-crystallin. Moreover, aB-crystallin significantly reduced thrombin-induced Ca21 influx and phosphoinositide hydrolysis by phospholipase C in human platelets. Additionally, plasma levels of aB-crystallin were markedly elevated in cardiomyopathic hamsters. Levels of aB-crystallin in vessel walls after endothelial injury were markedly reduced. Therefore, our results suggest that aB-crystallin, which is discharged from vessel walls in response to endothelial injury, acts intercellularly as a regulator of platelet function.

The role of Eph receptors in lens function and disease
AI SON, JE PARK, and RP ZHOU
Sci China Life Sci. 2012 May ; 55(5): 434–443.
http://dx.doi.org:/10.1007/s11427-012-4318-7.

In recent years the Eph family of receptor tyrosine kinases has been identified as a key regulator in lens clarity. In this review we discuss the roles of the Eph receptors in lens biology and cataract development.

As the primary role of the lens is to provide proper light refraction to the retina, the organ must possess several inherent characteristics, including stability, clarity, and the proper refractive index, to function appropriately. This is made possible in part through key features of the cytoplasmic content of lens fiber cells. One particularly unique aspect of lens fiber cells is their absence of organelles. Occurring during the later aspects of the differentiation process, fiber cells experience a gradual degradation of nuclei and organelles over a span of several days in what has been described as an “attenuated apoptosis”. This event is crucial for maintaining lens transparency as the absence of internal cellular structures allows light to travel unimpeded through the structure to the retina.

In addition to the loss of organelles, fiber cells achieve their appropriate refractive properties through regulation of their protein content. The bulk of the lens consists of soluble proteins known as the crystallins, a family comprising of α-, β-, and γ-crystallins. Crystallins represent 90% of the protein in the lens and provide the proper refractive medium for light passage within the lens. In addition to structural functions, α-crystallin is capable of chaperone activity, preventing aggregation of proteins denatured by various stressors. This chaperone activity is particularly important in the prevention of protein aggregation that may otherwise lead to insolubility and result in cataract formation. α-crystallins are expressed in both the lens epithelium and fiber cells, while β- and γ-crystallins are exclusively in differentiated lens fiber cells and are indicators of lens cell differentiation.

Lens clarity depends on the proper regulation of several critical features including structural integrity, cellular adhesion and packing, protein stability, cell-cell communication, and circulation. Mutations in the Eph receptor EPHA2 have been recently shown to cause cataracts in humans. The loss of functions of Eph receptors may affect one or several of these processes resulting in cataractogenesis.

The protein structure is highly conserved between both the EphA and EphB subgroups. The extracellular portion of the receptors contains an ephrin ligand-binding domain at the N-terminus, followed by a cystein-rich region epidermal growth factor (EGF) repeat motif and two fibronectin type-III repeats. The intercellular portion contains the signaling components which include a juxtamembrane region, a tyrosine kinase domain, a sterile alpha motif (SAM), and a PDZ binding domain at the end of the C-terminus.

Thus far, only EphA2 and ephrin-A5 have been found to have major roles in lens development and function. Expression of EphA2 in the lens has been reported to be within the fiber layer, most notably within the subcortical region, with some expression in epithelial cell layers. Ephrin-A5 has similar localizations, with expression observed in the subcortical fiber layer as well as within the lens epithelial layer. In the mature lens, both EphA2 and ephrin-A5 expression has been observed in the short edges of lens fiber cells when lenses are oriented in cross-section.

,u-Crystallin is a mammalian homologue of Agrobacterium ornithine cyclodeaminase and is expressed in human retina
RY Kim, R Gassert, and GJ Wistow
Proc. Natl. Acad. Sci. USA 1992 Oct; 89:  9292-9296. Evolution.

µ-Crystallin is the major component of the eye lens in several Australian marsupials. The complete sequence of kangaroo -crystalln has now been obtained by cDNA cloning. The predicted amino acid sequence shows similarity with ornithine  cyclodeaminases encoded by the tumor-inducing (Ti) plasmids of Agrobacterium tumefaciens. Until now, neither ornithine cyclodeaminase nor any structurally related enzymes have been observed in eukaryotes. RNA analysis of kangaroo tissues shows that µ-crystallin is expressed at high abundance in lens, but outside the lens µ-crystallin is preferentially expressed in neural tissues, retina, and brain. An

almost full-length cDNA for µ-crystallin was cloned from human retina. In human tissues, µ-crystallin mRNA is present in neural tissue, muscle, and kidney. This pattern of expression and relationship to an enzyme involved in unusual amino acid metabolism suggests the interesting possibility that mammalian µ-crystallins could be enzymes participating in processes such as osmoregulation or the metabolism of excitatory amino acids.

Ocular Aldehyde Dehydrogenases: Protection against Ultraviolet Damage and Maintenance of Transparency for Vision
Y Chen, DC Thompson, V Koppaka, JV Jester, and V Vasiliou
Prog Retin Eye Res. 2013 Mar; 33: 28–39.
http://dx.doi.org:/10.1016/j.preteyeres.2012.10.001

Aldehyde dehydrogenase (ALDH) enzymes catalyze the NAD(P)+-dependent oxidation of a wide variety of endogenous and exogenous aldehydes to their corresponding acids. Some members of the ALDH superfamily of enzymes are abundantly expressed in the mammalian cornea and lens in a taxon-specific manner. Considered to be corneal and lens crystallins, they confer protective and transparent properties upon these ocular tissues. ALDH3A1 is highly expressed in the cornea of most mammals, with the exception of rabbit that expresses exclusively ALDH1A1 in the cornea. ALDH1A1 is present in both the cornea and lens of several animal species. As a result of their catalytic and non-catalytic functions, ALDH3A1 and ALDH1A1 proteins protect inner ocular tissues from ultraviolet radiation and reactive oxygen-induced damage. In addition, these corneal crystallins contribute to cellular transparency in corneal stromal keratocytes, supporting a structural role of these ALDH proteins. A putative regulatory function of ALDH3A1 on corneal cell proliferation has also been proposed. Finally, the three retinaldehye dehydrogenases cooperatively mediate retinoic acid signaling during the eye development.

Transthyretin

Protein aggregation: Mechanisms and functional consequences
G Invernizzi, E Papaleo, R Sabate, S Ventura
Int J Biochem & Cell Biol Sep 2012; 44(9): 1541-1554

Understanding the mechanisms underlying protein misfolding and aggregation has become a central issue in biology and medicine. Compelling evidence show that the formation of amyloid aggregates has a negative impact in cell function and is behind the most prevalent human degenerative disorders, including Alzheimer’s Parkinson’s and Huntington’s diseases or type 2 diabetes. Surprisingly, the same type of macromolecular assembly is used for specialized functions by different organisms, from bacteria to human. Here we address the conformational properties of these aggregates, their formation pathways, their role in human diseases, their functional properties and how bioinformatics tools might be of help to study these protein assemblies.

Protein aggregation simulations

Protein aggregation simulations

The most employed three-dimensional representation for in silico studies of protein aggregation. (A) All-atom explicit solvent representation adopted in classical MD simulations. Transthyretin (TTR) is shown as an example in its dimeric form (pdb entry 1F41). The solvent molecule, Na+ and Cl− ions are shown as red sticks, blue and light blue spheres, respectively. The two polypeptide chains of TTR are shown as green and cyan cartoon, respectively. (B) Coarse grained model of TTR. In coarse grained calculations, the protein residues are represented by different pseudoatoms (beads) which should capture the essential properties of each residue side-chain.

http://www.sciencedirect.com/science/article/pii/S1357272512001896#fig0010  http://ars.els-cdn.com/content/image/1-s2.0-S1357272512001896-gr2.sml

Signaling by vitamin A and retinol-binding protein in regulation of insulin responses and lipid homeostasis
Daniel C. Berry, Noa Noy
Biochim Biophys Acta (BBA) – Molec Cell Biol of Lipids, Jan 2012; 1821(1): 168-176

► Holo-RBP, which transports vitamin A in blood, is a signaling molecule. ► STRA6 functions both as a vitamin A transporter and as a surface signaling receptor activated by holo-RBP. ► Activation of STRA6 by RBP–ROH triggers a JAK/STAT cascade, thereby inducing gene trascription. ► Some genes induced by RBP–ROH/STRA6/JAK/STAT signaling are involved in regulating insulin responses and lipid metabolism.

Binding of RBP–ROH to STRA6 induces the phosphorylation of a tyrosine residue in the receptor C-terminus, thereby activating a JAK/STAT signaling cascade. Consequently, in STRA6-expressing cells such as adipocytes, RBP–ROH induces the expression of STAT target genes, including SOCS3, which suppresses insulin signaling, and PPARγ, which enhances lipid accumulation. RBP–retinol thus joins the myriad of cytokines, growth factors and hormones which regulate gene transcription by activating cell surface receptors that signal through activation of Janus kinases and their associated transcription factors STATs.

STRA6 transduces RBP–retinol signaling to trigger a JAK.STAT cascade that regulates insulin responses and lipid homeostasis

STRA6 transduces RBP–retinol signaling to trigger a JAK.STAT cascade that regulates insulin responses and lipid homeostasis

STRA6 transduces RBP–retinol signaling to trigger a JAK/STAT cascade that regulates insulin responses and lipid homeostasis
http://ars.els-cdn.com/content/image/1-s2.0-S1388198111001211-gr1.sml

The three dimensional crystal structure of holo-retinol binding protein (RBP–ROH)

The three dimensional crystal structure of holo-retinol binding protein (RBP–ROH)

Residues that stabilize the interactions of RBP with TTR are highlighted in blue. The location of these residues emphasize that interactions of RBP with TTR block the entrance to the RBP ligand-binding pocket.
http://ars.els-cdn.com/content/image/1-s2.0-S1388198111001211-gr2.sml

The three dimensional crystal structure of the retinol–RBP–TTR complex. Human retinol–RBP–TTR [29] (PDB ID:1QAB) was generated using Pymol (http://www.pymol.org/). The TTR tetramer (magenta) is comprised of a dimer of dimers with two RBP molecules (red) bound to the opposite dimers. Interactions between RBP and TTR are mediated by residues at the entrance to the ligand binding pocket and span across the two TTR dimers.
http://ars.els-cdn.com/content/image/1-s2.0-S1388198111001211-gr3.sml
http://www.sciencedirect.com/science/article/pii/S1388198111001211#f0015

Fourier Transform Infrared Spectroscopy Provides a Fingerprint for the Tetramer and for the Aggregates of Transthyretin
Y Cordeiro, J Kraineva, MC Suarez, AG Tempesta, JW Kelly, JL Silva, et al.
Biophys J, 1 Aug 2006; 91(3): 957-967
Transthyretin (TTR) is an amyloidogenic protein whose aggregation is responsible for several familial amyloid diseases. Here, we use FTIR to describe the secondary structural changes that take place when wt TTR undergoes heat- or high-pressure-induced denaturation, as well as fibril formation. Upon thermal denaturation, TTR loses part of its intramolecular β-sheet structure followed by an increase in nonnative, probably antiparallel β-sheet contacts (bands at 1616 and 1686 cm−1) and in the light scattering, suggesting its aggregation. Pressure-induced denaturation studies show that even at very elevated pressures (12 kbar), TTR loses only part of its β-sheet structure, suggesting that pressure leads to a partially unfolded species. On comparing the FTIR spectrum of the TTR amyloid fibril produced at atmospheric pressure upon acidification (pH 4.4) with the one presented by the native tetramer, we find that the content of β-sheets does not change much upon fibrillization; however, the alignment of β-sheets is altered, resulting in the formation of distinct β-sheet contacts (band at 1625 cm−1). The random-coil content also decreases in going from tetramers to fibrils. This means that, although part of the tertiary- and secondary-structure content of the TTR monomers has to be lost before fibril formation, as previously suggested, there must be a subsequent reorganization of part of the random-coil structure into a well-organized structure compatible with the amyloid fibril, as well as a readjustment of the alignment of the β-sheets. Interestingly, the infrared spectrum of the protein recovered from a cycle of compression-decompression at pD 5, 37°C, is quite similar to that of fibrils produced at atmospheric pressure (pH 4.4), which suggests that high hydrostatic pressure converts the tetramers of TTR into an amyloidogenic conformation.

Multiple hepatocyte-enriched nuclear factors function in the regulation of transthyretin and alpha 1-antitrypsin genes
R H Costa, D R Grayson and J E Darnell Jr
PNAS Jun 1, 1988;  85(11): 3840-3844

Double-stranded oligodeoxynucleotides that represent protein binding sites in the regulatory regions of the mouse genes encoding transthyretin (TTR) and alpha 1-antitrypsin (alpha 1-AT) bound a nuclear protein factor(s) found mainly in hepatocytes. A site in the regulatory region of the gene encoding rat serum albumin and, surprisingly, a region in the simian virus 40 enhancer also bind the same factor. Oligodeoxynucleotide affinity chromatography (with one of the TTR binding sites) allowed a 500-fold purification of the protein. The purified protein protected similar portions of all the regulatory regions, as well as the simian virus 40 core C enhancer element, from digestion with DNase I. A DNA-binding protein previously purified from liver by virtue of its ability to bind to several virus enhancer sequences also binds to TTR, alpha 1-AT, and albumin regulatory sites. Thus, all these binding sites, which contain only minimal sequence similarity, may bind to a single protein, or a similar family of proteins, that activates liver-specific transcription of coordinately expressed genes.

Retinal Anatomy and Function of the Transthyretin Null Mouse
BV Buia, JA Armitagea, EL Fletchera, SJ Richardsonb, G Schreiberb and AJ Vingrysa.  Exp. Eye Res. 2001; 73: 651-659

TTR null mice show no anomalies of receptoral (P3) nor post-receptoral (b-wave) ERG components compared with wild-type mice. although circulating plasma levels of retinol and retinol binding protein (RBP) are extremely low, this reduction has little effect on the retinal structure or function of the TTR null mouse. These data are consistent with the existence of mechanisms for the transport of retinol to the retina independent of the classical retinol-RBP-TTR complex.

Post-translational modifications of transthyretin affect the triiodonine-binding potential
A Henze, T Homann, M Serteser, O Can, O Sezgin, et al.
J. Cell. Mol. Med. 2014; XX(X): 1-12

This study provides evidence that oxidative modifications of Cys10 seem to affect binding of T3 to TTR probably because of the introduction of a sterical hindrance and induction of conformational changes. As oxidative modifications can be dynamically regulated, this may represent a sensitive mechanism to adjust thyroid hormone availability.

Plasma and cellular retinoid-binding proteins and transthyretin are all localized in the islets of Langerhans in the rat
M Kato, K Kato, WS Blaner, BS Chertow, and DS Goodman
Proc. Nati. Acad. Sci. 1985; 82: 2488-2492

Unusually high levels of CRBP, RBP, TTR, and cellular retinoic acid BP were found in rat islets. The findings suggest that retinoids and their binding proteins may play important metabolic roles within islet cells, and hence that they may be involved in some way in the biological, endocrine function of the islets.

Potent Kinetic Stabilizers that Prevent Transthyretin-mediated Cardiomyocyte Proteotoxicity
MM Alhamadsheh, S Connelly, A Cho, N Reixach,..JW Kelly, and IA Graef
Sci Transl Med. 2011 Aug 24; 3(97): 97ra81.
http://dx.doi.org:/10.1126/scitranslmed.3002473

The V122I mutation that alters the stability of transthyretin (TTR) affects 3–4% of African Americans and leads to amyloidogenesis and development of cardiomyopathy. In addition, 10–15% of individuals over the age of 65 develop senile systemic amyloidosis (SSA) and cardiac TTR deposits due to wild-type TTR amyloidogenesis.  We developed a fluorescence polarization-based HTS screen, which identified several new chemical scaffolds targeting TTR. These novel compounds were potent kinetic stabilizers of TTR and prevented tetramer dissociation, unfolding and aggregation of both wild type and the most common cardiomyopathy-associated TTR mutant, V122I-TTR. These compounds effectively inhibited the proteotoxicity of V122I-TTR towards human cardiomyocytes.

Retinoid receptors, transporters, and metabolizers as therapeutic targets in late onset Alzheimer disease
Ann B. Goodman
J. Cell. Physiol., Dec 2006; 209: 598–603. http://dx.doi.org:/10.1002/jcp.20784

Vitamin A (retinoid) is required in the adult brain to enable cognition, learning, and memory. While brain levels of retinoid diminish over the course of normal ageing, retinoid deficit is greater in late onset Alzheimer disease (LOAD) brains than in normal-aged controls. This paper reviews recent evidence supporting these statements and further suggests that genes necessary for the synthesis, transport and function of retinoid to and within the ageing brain are appropriate targets for treatment of LOAD. These genes tend to be clustered with genes that have been proposed as candidates in LOAD, are found at chromosomal regions linked to LOAD, and suggest the possibility of an overall coordinated regulation. This phenomenon is termed Chromeron and is analogous to the operon mechanism observed in prokaryotes. Suggested treatment targets are the retinoic-acid inactivating enzymes (CYP26)s, the retinol binding and transport proteins, retinol-binding protein (RBP)4 and transthyretin (TTR), and the retinoid receptors. TTR as a LOAD target is the subject of active investigation. The retinoid receptors and the retinoid-inactivating enzymes have previously been proposed as targets. This is the first report to suggest that RBP4 is an amenable treatment target in LOAD. RBP4 is elevated in type-2 diabetes and obesity, conditions associated with increased risk for LOAD. Fenretinide, a novel synthetic retinoic acid (RA) analog lowers RBP4 in glucose intolerant obese mice. The feasibility of using fenretinide either as an adjunct to present LOAD therapies, or on its own as an early prevention strategy should be determined.

Transthyretin: a key gene involved in the maintenance of memory capacities during aging.
Brouillette J1, Quirion R.
Neurobiol Aging. 2008 Nov; 29(11): 1721-32. Epub 2007 May 23.

Aging is often associated with decline of memory function. Aged animals, like humans, can naturally develop memory impairments and thus represent a useful model to investigate genes involved in long-term memory formation that are differentially expressed between aged memory-impaired (AI) and aged memory-unimpaired (AU) animals following stimulation in a spatial memory task. We found that alterations in hippocampal gene expression of transthyretin (TTR), calcineurin, and NAD(P)H dehydrogenase quinone 2 (NQO2) were associated with memory deficits in aged animals. Decreased TTR gene expression could be attributed at least partially to diminish activity of C/EBP immediate-early gene cascade initiated by CREB since protein levels of C/EBP, a transcription factor regulating both TTR and NQO2 expression, was decreased in AI animals. Memory deficits were also found during aging in mice lacking TTR. Treatment with retinoic acid reversed cognitive deficits in these knock-out mice as well as in aged rats. Our study provides genetic, behavioural and molecular evidence that TTR is involved in the maintenance of normal cognitive processes during aging by acting on the retinoid signaling pathway.

Neuroprotective effects of natural products: interaction with intracellular kinases, amyloid peptides and a possible role for transthyretin.
Bastianetto S1, Brouillette J, Quirion R.
Neurochem Res. 2007 Oct;32(10):1720-5. Epub 2007 Apr 4.

Various studies reported on the neuroprotective effects of natural products, particularly polyphenols, widely present in food and beverages. For example, we have shown that resveratrol, a polyphenol contained present in red wine and other foods, activates the phosphorylation of protein kinase C (PKC), this effect being involved in its neuroprotective action against Ass-induced toxicity. Moreover, tea-derived catechin gallate esters inhibit the formation Ass oligomers/fibrils, suggesting that this action likely contributes to their neuroprotective effects. Interestingly, the effects of polyphenols may be attributable, at least in part, to the presence of specific binding sites. Autoradiographic studies revealed that these binding sites are particularly enriched in choroids plexus in the rat brain. Interestingly, the choroid plexus secretes transthyretin, a protein that has been shown to prevent Abeta aggregation and that may be critical to the maintenance of normal learning capacities in aging. Taken together, these data suggest that polyphenols target multiple enzymes/proteins leading to their neuroprotective actions.

Aboard Transthyretin: From Transport to Cleavage
MA Liz, FM Mar, F Franquinho and MM Sousa
IUBMB Life 2010; 62(6): 429–435.

Transthyretin (TTR) is a plasma and cerebrospinal fluid protein mainly recognized as the transporter of thyroxine (T4) and retinol. Mutated TTR leads to familial amyloid polyneuropathy, a neurodegenerative disorder characterized by TTR amyloid deposition particularly in peripheral nerves. Beside its transport activities, TTR is a cryptic protease and participates in the biology of the nervous system. Several studies have been directed at finding new ligands of TTR to further explore the biology of the protein. From the identified ligands, some were in fact TTR protease substrates. In this review, we will discuss the existent information concerning TTR ligands/substrates.

The amyloidogenic potential of transthyretin variants correlates with their tendency to aggregate in solution
A Quintasa, MJM Saraiva, RMM Brito
FEBS Letters  1997; 418: 297-300

Amyloid fibril formation and deposition are the basis for a wide range of diseases, including spongiform encephalopathies, Alzheimer’s and familial amyloidotic polyneuropathies. However, the molecular mechanisms of amyloid formation are still poorly characterized. In certain forms of familial amyloidotic polyneuropathy (FAP), the amyloid fibrils are mostly constituted by variants of transthyretin (TTR). V30M-TTR is the most frequent variant, and L55P-TTR is the variant associated with the most aggressive form of amyloidosis. Here, we report gel filtration chromatography experiments to characterize the aggregation states of WT-, V30M-, L55P-TTR and a non-amyloidogenic variant, T119M-TTR, in solution, at nearly physiological pH. These studies show that all four protein tetramers dissociate to monomer upon dilution, in the submicromolar range, at pH 7.0. The amyloidogenic proteins V30M- and L55P-TTR show a complex equilibrium between monomers, tetramers and high molecular weight aggregate species. These aggregates dissociate directly to monomer upon dilution. This study shows that the tendency to form aggregates among the four studied proteins correlates with their known amyloidogenic potential. Thus, the amyloidogenic mutations could perturb the structure and/or stability of the monomeric species leading initially to the formation of soluble aggregates and at a later stage to insoluble amyloid fibrils.

Plasma Transthyretin Indicates the Direction of both Nitrogen Balance and Retinoid Status in Health and Disease
Ingenbleek Y and Bienvenu J
The Open Clinical Chemistry Journal, 2008; 1: 1-12

Whatever the nutritional status and the disease condition, the actual transthyretin (TTR) plasma level is determined by opposing influences between anabolic and catabolic alterations. Rising TTR values indicate that synthetic processes prevail over tissue breakdown with a nitrogen balance (NB) turning positive as a result of efficient nutritional support and / or anti-inflammatory therapy. Declining TTR values point to the failure to sustain NB as an effect of maladjusted dietetic management and / or further worsening of the morbid condition. Serial measurement of TTR thus appears as a dynamic index defining the direction of NB in acute and chronic disorders. The level of TTR production by the liver also works as a limiting factor for the cellular bioavailability of retinol and retinoid derivatives which play major roles in the brain ageing process. Optimal protein nutritional status, as assessed by TTR values within the normal range, prevents the occurrence of vascular and cerebral damages while maintaining the retinoid-mediated memory, cognitive and behavioral activities of elderly persons.

In Vitro and In Vivo Interactions of Homocysteine with Human Plasma Transthyretin
A Lim, S Sengupta, ME McComb, R Théberge, WG Wilson, CE Costello, DW Jacobsen
J. Biol. Chem. Sep 24, 2003. Manuscript M306748200 http://dx.doi.org:/10.1074/jbc.M306748200

Hyperhomocysteinemia is an independent risk factor for cardiovascular disease and an emerging risk factor for cognitive dysfunction and Alzheimer’s disease. Greater than 70% of the homocysteine in plasma is disulfide bonded to protein cysteine residues. The identity and functional consequences of protein homocysteinylation are just now emerging. The amyloidogenic protein transthyretin (prealbumin), as we now report, undergoes homocysteinylation at its single cysteine residue (Cys10) both in vitro and in vivo. Thus, when human plasma or highly purified transthyretin was incubated with 35SLhomocysteine followed by SDSPAGE and phosphor-imaging, two bands corresponding to transthyretin dimer and tetramer were observed. Treatment of the labeled samples with βmercaptoethanol prior to SDSPAGE removed the disulfide bound homocysteine. Transthyretin-Cys10SS-homocysteine

was then identified in vivo in plasma from normal donors, patients with end stage renal disease and homocystinurics by immune-precipitation and HPLC/electrospray mass spectrometry. The ratios of transthyretin-Cys10SS-homocysteine and transthyretin-Cys10SS-sulfonate to that of unmodified transthyretin increased with increasing homocysteine plasma concentrations whereas the ratio of transthyretin-Cys10SS-cysteine to that of unmodified transthyretin decreased. Hyperhomocystein-emic burden is thus reflected in the plasma levels of transthyretin-Cys10SS-homocysteine, which in turn may contribute to the pathological consequences of amyloid disease.

Support for the multigenic hypothesis of amyloidosis: The binding stoichiometry of retinol-binding protein, vitamin A, and thyroid hormone influences transthyretin amyloidogenicity in vitro
Joleen T. White and Jeffery W. Kelly
PNAS  Nov 6, 2001; 98(23): 13019–13024 http://pnas/cgi/dx.doi.org:/10.1073/pnas.241406698

The amyloidoses are a large group of protein misfolding diseases.

Genetic and biochemical evidence support the hypothesis that amyloid formation from wild-type or 1 of 80 sequence variants of transthyretin causes the human amyloid diseases senile systemic amyloidosis or familial amyloid polyneuropathy, respectively. The late onset and variable penetrance of these diseases has led to their designation as multigenic—implying that the expression levels and alleles of multiple gene products influence the course of pathology. Here we show that the binding stoichiometry of three interacting molecules, retinol-binding protein, vitamin A, and L-thyroxine, notably influenced transthyretin amyloidogenicity in vitro. At least 70 genes control retinol-binding protein, vitamin A, and L-thyroxine levels in plasma and have the potential to modulate the course of senile systemic amyloidosis or familial amyloid polyneuropathy.

Transthyretin sequesters amyloid protein and prevents amyloid formation
AL Schwarzman, L Gregori, MP Vitek, S Lyubski, et al.
Proc. Natl. Acad. Sci. USA Aug 1994; 91: 8368-8372. Neurobiology

The cardinal pathological features of Alzheimer disease are depositions of aggregated amyloid 13 protein (AP) in the brain and cerebral vasculature. However, the AP3 is found in a soluble form in cerebrospinal fluid in healthy individuals and patients with Alzheimer disease. We postulate that sequestration of AP3 precludes amyloid formation. Failure to sequester AP in Alzheimer disease may result in amyloidosis. When we added AP3 to cerebrospinal fluid of patients and controls it was rapidly sequestered into stable complexes with transthyretin. Complexes with apolipoprotein E, which has been shown to bind AP3 in vitro, were not observed in cerebrospinal fluid. Additional in vitro studies showed that both purified transthyretin and apolipoprotein E prevent amyloid formation.

Oxytocin

Variation in the oxytocin receptor gene is associated with behavioral and neural correlates of empathic accuracy
HR Laursen, HR Siebner, T Haren, K Madsen, R Grønlund, O Hulme, S Henningsson
Front Behavioral Neurosci 6 Dec 2014; 8(423): 1-10.
http://dx.doi.org:/10.3389/fnbeh.2014.00423

The neuromodulators oxytocin and serotonin have been implicated in regulating affective processes underlying empathy. Understanding this dependency, however, has been limited by a lack of objective metrics for measuring empathic performance. Here we employ a novel psychophysical method for measuring empathic performance that quantitatively measures the ability of subjects to decode the experience of another person’s pain. In 50 female subjects, we acquired functional magnetic resonance imaging data as they were exposed to a target subject experiencing variable degrees of pain, whilst performing an irrelevant attention-demanding task. We investigated the effect of variation in the oxytocin receptor gene (OXTR) and the serotonin transporter gene (SLC6A4) on the psychophysical and neurometric variability associated with empathic performance. The OXTR rs2268498 and rs53576 polymorphisms, but not the SLC6A45-HTTLPR, were associated with significant differences in empathic accuracy, with CC-and AA-carriers, respectively, displaying higher empathic accuracy. For OXTR rs2268498 there was also a genotype difference in the correlation between empathic accuracy and activity in the superior temporal sulcus (STS). In OXTR rs2268498CC-carriers, high empathic accuracy was associated with stronger responsiveness of the right STS to the observed pain. Together, the results show that genetic variation in the OXTR has significant influence on empathic accuracy and that this may be linked to variable responsivity of the STS.

Naturally occurring variations in maternal behavior in the rat are associated with differences in estrogen inducible central oxytocin receptors
Frances Champagne, Josie Diorio, Shakti Sharma, and Michael J. Meaney
PNAS  Oct 23, 2001; 98(22): 12736–12741.
http://pnas.org/cgi/doi/10.1073/pnas.221224598

Naturally occurring variations in maternal licking/grooming influence neural development and are transmitted from mother to female offspring. We found that the induction of maternal behavior in virgin females through constant exposure to pups (pup sensitization) was significantly shorter in the offspring of High compared with Low licking/grooming mothers, suggesting differences in maternal responsivity. In randomly selected females screened for individual differences in maternal responsivity and subsequently mated, there was a significant and negative correlation (r520.73) between the latency to exhibit maternal behavior in the pup sensitization paradigm and the frequency of pup licking/grooming during lactation. Females that were more maternally responsive to pups and that showed increased levels of pup licking/grooming also showed significantly higher oxytocin receptor levels in the medial preoptic area, the lateral septum, the central nucleus (n.) of the amygdala, the paraventricular n. of the hypothalamus, and the bed n. of the stria terminalis. Intra-cerebroventricular administration of an oxytocin receptor antagonist to mothers on postpartum day 3 completely eliminated the differences in pup licking/grooming, suggesting that differences in oxytocin receptor levels are functionally related to maternal behavior. Finally, estrogen treatment of virgin females significantly increased oxytocin receptor binding in the medial preoptic area and lateral septum of female offspring of High, but not Low, licking/grooming mothers. These findings suggest that maternal licking/grooming influences the development of estrogen sensitivity in brain regions that regulate maternal behavior, providing a potential mechanism for the intergenerational transmission of individual differences in maternal behavior.

Life in groups: the roles of oxytocin in mammalian sociality
Allison M. J. Anacker and Annaliese K. Beery
Front Behavioral Neurosci Dec2013; 7(185): 1 – 10.
http://dx.doi.org:/10.3389/fnbeh.2013.00185

In recent decades, scientific understanding of the many roles of oxytocin (OT) in
social behavior has advanced tremendously. The focus of this research has been on maternal attachments and reproductive pair-bonds, and much less is known about the substrates of sociality outside of reproductive contexts. It is now apparent that OT influences many aspects of social behavior including recognition, trust, empathy, and other components of the behavioral repertoire of social lspecies. This review provides a comparative perspective on the contributions of OT to life in mammalian social groups. We provide background on the functions of OT in maternal attachments and the early social lenvironment, and give an overview of the role of OT circuitry in support of different mating systems. We then introduce peer relationships in group-living rodents as a means for studying the importance of OT in non-reproductive affiliative behaviors. We review species differences in oxytocin receptor (OTR )distributions in solitary and group-living species of South American tuco-tucos and in African mole-rats, as well as singing mice. We discuss variation in OTR levels with seasonal changes in social behavior in female meadow voles, and the effects of OT manipulations on peer huddling behavior. Finally, we discuss avenues of promise for future investigation, and relate current findings to research in humans and non-human primates. There is growing evidence that OT is involved in social selectivity, including increases in aggression toward social outgroups and decreased huddling with unfamiliar individuals, which may support existing social structures or relationships at the expense of others. OT’s effects reach beyond maternal attachment and pair bonds to play a role in affiliative behavior underlying “friendships”, organization of broad social structures, and maintenance of established social relationships with individuals or groups.

Relative conformational rigidity in oxytocin and [1-penicillamine]-oxytocin: A proposal for the relationship of conformational flexibility to peptide hormone agonism and antagonism
Jean-Paul Meraldi, Victor J. Hruby, and Anne I. Richard Brewster
Proc. Natl. Acad. Sci. USA Apr 1977;  74(4): 1373-1377, Biochemistry

A comparative study of the proton and carbon-13 nuclear magnetic resonance spectral parameters of the peptide hormone oxytocin and of its competitive inhibitor [1-L-penicillamineloxytocin has been made, and the results analyzed in terms of comparative conformational and dynamic properties. The results indicate that oxytocin has a flexible conformation, while [1-L-penicillamineJoxytocin has a more restricted conformation. The results provide a framework for understanding the mechanism of peptide hormone agonism and antagonism for these compounds, and an approach for understanding some features of the interaction of the hormone and related compounds with their receptor.

Relation of the Conformation of Oxytocin to the Biology of Neurohypophyseal Hormones
Roderich Walter, I. L. Schwartz, J. H. Darnell, And D. W. Urry
Proc. Nat. Acad. Sci. USA  Jun 1971; 68(6): 1355-1359.

The conformation of oxytocin is related to the evolution and to some of the biological activities of neurohypophyseal hormonal peptides. On the basis of the three-dimensional structure, positions 3, 4, 7, and 8 are the only loci at which naturally occurring neurohypophyseal peptides may be expected to differ. The side chains of these amino-acid residues are the primary determinants of the differential specificity in interactions between neurohypophyseal hormones and their receptors.
There are three general groups of structural modifications of neurohypophyseal hormones which can be correlated with specific changes in biological activity: (a) those affecting the stabilization of the backbone of the peptide, which would extensively perturb the spatial relationships among all the constituent amino acids and hence, affect both affinity and intrinsic activities uniformly; (b) those which, while retaining the stability of the backbone conformation, alter the steric environment and charge distribution of limited surface areas, and thereby can affect affinity and intrinsic activity differentially; and (c) those changing the steric and electronic requirements of moieties comprising the active surface of the neurohypophyseal peptide, without perturbing the peptide backbone of the hormone molecule and, hence, affecting intrinsic activity without altering affinity.

The Nonpeptide Oxytocin Receptor Agonist WAY 267,464: Receptor-Binding Profile, Prosocial Effects and Distribution of c-Fos Expression in Adolescent Rats
C. Hicks, W. Jorgensen, C. Brown, J. Fardell, J. Koehbach, C. W. Gruber, et al.
J Neuroendocrinol. Jul 2012; 24(7): 1012–1029.
http://dx.doi.org:/10.111/j.1365-2826.2012.02311.x.

Previous research suggests that the nonpeptide oxytocin receptor (OTR) agonist WAY 267,464 may only partly mimic the effects of oxytocin in rodents. The present study further explored these differences and related them to OTR and vasopressin 1a receptor (V1aR) pharmacology and regional patterns of c-Fos expression. Binding data for WAY 267,464 and oxytocin were obtained by displacement binding assays on cellular membranes, while functional receptor data were generated by luciferase reporter assays. For behavioral testing, adolescent rats were tested in a social preference paradigm, the elevated plus-maze (EPM) and for locomotor activity changes following WAY 267,464 (10 and 100 mg/kg, i.p.) or oxytocin (0.1 and 1 mg/kg, i.p.). The higher doses were also examined for their effects on regional c-Fos expression. Results showed that WAY 267,464 had higher affinity (Ki) at the V1aR than the OTR (113 versus 978 nM). However, it had no functional response at the V1aR and only a weak functional effect (EC50) at the OTR (881 nM). This suggests WAY 267,464 is an OTR agonist with weak affinity and a possible V1aR antagonist. Oxytocin showed high binding at the OTR (1.0 nM) and V1aR (503 nM), with a functional EC50 of 9.0 and 59.7 nM, respectively, indicating it is a potent OTR agonist and full V1aR agonist. WAY 267,464 (100 mg/kg), but not oxytocin, significantly increased the proportion of time spent with a live rat, over a dummy rat, in the social preference test. Neither compound affected EPM behaviour, whereas the higher doses of WAY 267,464 and oxytocin suppressed locomotor activity. WAY 267,464 and oxytocin produced similar c-Fos expression in the paraventricular hypothalamic nucleus, central amygdala, lateral parabrachial nucleus and nucleus of the solitary tract, suggesting a commonality of action at the OTR with the differential doses employed. However, WAY 267,464 caused greater c-Fos expression in the medial amygdala and the supraoptic nucleus than oxytocin, and lesser effects in the locus coeruleus. Overall, our results confirm the differential effects of WAY 267,464 and oxytocin and suggest that this may reflect contrasting actions of WAY 267,464 and oxytocin at the V1aR. Antagonism of the V1aR by WAY.

Direct identification of human oxytocin receptor- binding domains using a photoactivatable cyclic peptide antagonist: Comparison with the human V1a vasopressin receptor
C Breton, H Chelli, M Kabbaj-Benmansour, E Carnazzi, et al.
J. Biol. Chem. May 3, 2001 M102073200
http://dx.doi.org:/10.1074/jbc.M102073200

Understanding of the molecular determinants responsible for antagonist binding to the oxytocin receptor should provide important insights that facilitate rational design of potential therapeutic agents for the treatment of preterm labor. To study ligand-receptor interactions, we used a novel photosensitive radio-iodinated antagonist of the human oxytocin receptor, termed [125I]-ZOTA. This ligand had an equivalent high affinity for human oxytocin and V1a vasopressin receptors expressed in CHO cells. Taking advantage of this dual specificity, we conducted photo-affinity labeling experiments on both receptors. Photo-labeled oxytocin and V1a receptors appeared as a unique protein band at 70-75 kDa and two labeled protein bands at 85-90 kDa and 46 kDa, respectively. To identify contact sites between the antagonist and the receptors, the labeled 70-75 kDa and the 46 kDa proteins were cleaved with CNBr and digested with Lys-C and Arg-C endoproteinases. The fragmentation patterns allowed to identify a covalently labeled region in the oxytocin receptor transmembrane domain III, consisting of the residues Leu114-Val115-Lys116. Analysis of contact sites in the V1a receptor led to the identification of the homologous region, consisting of the residues Val126-Val127-Lys128. Binding domains were confirmed by mutation of several CNBr cleavage sites in the oxytocin receptor and of one Lys-C cleavage site in the V1a receptor. The results are in agreement with previous experimental data and three-dimensional models of agonist and antagonist binding to members of the oxytocin/vasopressin receptor family.

Presynaptic modulation by metabotropic glutamate receptors of excitatory and inhibitory synaptic inputs to hypothalamic magnocellular neurons.
Schrader, L. A. and J. G. Tasker.
J. Neurophysiol. 1997; 77: 527–536.

The effects of activation of metabotropic glutamate receptors (mGluRs) on synaptic inputs to magnocellular neurons of the hypothalamic supraoptic nucleus (SON) were studied with the use of whole cell patch-clamp and microelectrode recordings in acute hypothalamic slices.

These data indicate that mGluRs in the hypothalamus have opposing actions at somata/dendrites and at presynaptic terminals. Activa- tion of group I receptors (mGluR1 and/or mGluR5) on presynaptic somata/dendrites led to an increase in spike-dependent transmitter release, whereas activation of the group III receptors (mGluR4, 7, and/or 8) on presynaptic terminals suppressed glutamate and GABA release onto SON neurons. No diffferences were seen in the effects of mGluR activation between immunohistochemically oxytocin and vasopressin neurons of the SON.

Postsynaptic mechanism of depression of GABAergic synapses by oxytocin in the supraoptic nucleus of immature rat
A. B. Brussaard, K. S. Kits and T. A. de Vlieger
Journal of Physiology 1996; 497(2): 495-507

  1. Oxytocin is known to act on autoreceptors of oxytocin neurons in the supraoptic nucleus (SON). We investigated whether oxytocin modulates putative oxytocin neurones by suppressing the GABAA receptor-mediated synaptic inputs on these cells.
  2. GABAergic inhibitory postsynaptic currents (IPSCs) were recorded from SON neurons in hypothalamic slices from young rats. Oxytocin specifically reduced the amplitude of both spontaneous and evoked IPSCs, without altering their current kinetics.
  3. The effect of oxytocin was observed in 70% of the magnocellular neurons recorded from the dorsomedial part of the SON. d(CH2)5OVT, a specific antagonist of oxytocin receptors, blocked the effect of oxytocin on the IPSCs. Vasopressin had no effect on oxytocin-sensitive SON neurons.
  4. The intervals between spontaneous IPSCs were not affected by oxytocin. This suggested that oxytocin had a postsynaptic effect on SON neurons.
  5. This postsynaptic origin was further substantiated by application of TTX, which blocked all evoked release but did not prevent the suppressive effect of oxytocin on the amplitude of the spontaneous IPSCs still present in the recording. The selective effect of oxytocin on IPSC amplitude was also maintained in nominally zero extracellular calcium.
  6. Intracellulax perfusion of SON neurones with GTPyS mimicked the effect of oxytocin on IPSCs, while GDP/6S, similarly applied, abolished the effect of oxytocin.
  7. Application of calcium mobilizers such as thapsigargin and caffeine also reduced the amplitude of spontaneous IPSCs without significantly altering the frequency at which IPSCs occurred.
  8. Thus, oxytocin depresses GABAergic synapses in the SON via modulation of the postsynaptic GABAA receptors. This would lead to disinhibition of SON neurons sensitive to oxytocin and could, therefore, be a powerful means of controlling the firing of oxytocin neurons.

Oxytocin, vasopressin and sociality
CS Carter, AJ Grippo, H Pournajafi-Nazarloo, MG Ruscio and SW Porges
Progress in Brain Research 2008; 170:331-36.
http://dx. doi.org:/10.1016/S0079-6123(08)00427-5

The neurobiology of social behavior is interwoven with autonomic, endocrine and other homoeostatic processes responsible for the adaptive functions of reproduction and survival. Young mammals are dependent on their mothers for nourishment, and the interaction between the mother and infant may be a physiological and neuroendocrine prototype for mammalian sociality. Although these adaptive functions of the mother–infant social behavioral dyad are obvious, adult social interactions, including social bonds, also are important to health and survival. Two neuropeptides, oxytocin (OXT) and arginine vasopressin (AVP), have been repeatedly implicated in mammalian social behaviours and emotional states that support sociality. Although best known for their roles in reproduction and homoeostasis, these peptides play a central role in the activation and expression of social behaviours and emotional states. Recent studies from our work with the prairie vole (Microtus ochrogaster), reviewed here, reveal a role for both OXT and AVP in behavioral and endocrine changes during social interactions, and also changes that are associated with the absence of social interactions (i.e. social isolation).

Serotonergic Neurotransmission in Autism Spectrum Disorders, Autism – A Neurodevelopmental Journey from Genes to Behaviour, Dr. Valsamma Eapen (Ed.), ISBN: 978-953-307-493-1, InTech, Available from: http://www.intechopen.com/books/autism-a-neurodevelopmental-journey-fromgenes-to-behaviour/serotonergic-neurotransmission-in-autism-spectrum-disorders

Chapter 5. Serotonergic Neurotransmission in Autism Spectrum Disorders
Yoshihiro Takeuchi
3.7 Oxytocin and autism spectrum disorders, pp96-97

Oxytocin is a peptide hormone produced by neurosecretory cells at the hypothalamus supraoptic nucleus and paraventricular nucleus in mothers and it is secreted from the posterior pituitary lobe. The hormone exhibits a variety of functions in the brain, as well as roles in delivery and galactopoiesis. Oxytocin regulates emotion in the company of somebody and oxytocin concentrations in the blood are low in autism spectrum disorders patients, therefore, the hormone attracts the most attention in investigations of the pathogenesis of autism spectrum disorders (Kirsch. et al; 2005). Oxytocin plays a role in signal transmission between the mother and the fetus so that neurons in the fetus are prepared for delivery. Oxytocin temporarily switches intracerebral GABAergic neurotransmission from the excitatory to inhibitory state in the fetus at delivery and exerts neuroprotective action. Serotonin fiber endings are abundant on oxytocin neurons at the hypothalamus supraoptic nucleus and paraventricular nucleus, and it should be noted that oxytocin neurons are regulated by the serotonin neuron system.

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The Union of Biomarkers and Drug Development

The Union of Biomarkers and Drug Development

Author and Curator: Larry H. Bernstein, MD, FCAP

There has been consolidation going on for over a decade in both thr pharmaceutical and in the diagnostics industry, and at the same time the page is being rewritten for health care delivery.  I shall try to work through a clear picture of these not coincidental events.

Key notables:

  1. A growing segment of the US population is reaching Medicare age
  2. There is also a large underserved population in both metropolitan and nonurban areas and a fragmentation of the middle class after a growth slowdown in the economy since the 2008 deep recession.
  3. The deep recession affecting worldwide economies was only buffered by availability of oil or natural gas.
  4. In addition, there was a self-destructive strategy to cut spending on national scales that withdrew the support that would bolster support for infrastrucrue renewl.
  5. There has been a dramatic success in the clinical diagnostics industry, with a long history of being viewed as a loss leader, and this has been recently followed by the pharmaceutical industry faced with inability to introduce new products, leading to more competition in off-patent medications.
  6. The introduction of the Accountable Care Act has opened the opportunities for improved care, despite political opposition, and has probably sustained opportunity in the healthcare market.

Let’s take a look at this three headed serpent. – Pharma, Diagnostics, New Entity
?  The patient  ?
?  Insurance    ?
?  Physician    ?

Part I.   The Concept

When Illumina Buys Roche: The Dawning Of The Era Of Diagnostics Dominance

Robert J. Easton, Alain J. Gilbert, Olivier Lesueur, Rachel Laing, and Mark Ratner
http://PharmaMedtechBI.com    | IN VIVO: The Business & Medicine Report Jul/Aug 2014; 32(7).

  • With current technology and resources, a well-funded IVD company can create and pursue a strategy of information gathering and informatics application to create medical knowledge, enabling it to assume the risk and manage certain segments of patients
  • We see the first step in the process as the emergence of new specialty therapy companies coming from an IVD legacy, most likely focused in cancer, infection, or critical care

When Illumina Inc. acquired the regulatory consulting firm Myraqa, a specialist in in vitro diagnostics (IVD), in July, the press release announcement characterized the deal as one that would bolster illumina’s in-house capabilities for clinical readiness and help prepare for its next growth phase in regulated markets. That’s not surprising given the US Food and Drug Administration’s (FDA) approval a year and a half ago of its MiSeq next-generation sequencer for clinical use. But the deal could also suggest illumina is beginning to move along the path toward taking on clinical risk – that is, eventually

  • advising physicians and patients, which would mean facing regulators directly

Such a move – by illumina, another life sciences tools firm, or an information specialist from the high-tech universe – is inevitable given

  • the emerging power of diagnostics and traditional health care players’ reluctance to themselves take on such risk.

Alternatively, we believe that a well-funded diagnostics company could establish this position. either way, such a champion would establish dominion over and earn higher valuation than less-aggressive players who

  • only supply compartmentalized drug and device solutions.

Diagnostics companies have long been dogged by a fundamental issue:

  1. they are viewed and valued more along the lines of a commodity business than as firms that deliver a unique product or service
  2. diagnostics companies are in position to do just that today because they are now advantaged by having access to more data points.
  3. if they were to cobble together the right capabilities, diagnostics companies would have the ability to turn information into true medical knowledge

Example: PathGEN PathChip

nucleic-acid-based platform detects 296 viruses, bacteria, fungi & parasites

http://ow.ly/d/2GvQhttp://ow.ly/DSORV

This puts the diagnostics player in an unfamiliar realm where it can ask the question of what value they offer compared with a therapeutic. The key is that diagnostics can now offer unique information and potentially unique tools to capture that information. In order to do so, it has to create information from the data it generates, and then to supply that knowledge to users who will value and act on that knowledge. Complex genomic tests, as much as physical examination, may be the first meaningful touch point for physicians’ classification of disease.

Even if lab tests are more expensive, it is a cheaper means for deciding what to do first for a patient than the trial and error of prescribing medication without adequate information. Information is gaining in value as the amount of treatment data available on genomically characterizable subpopulations increases. In such a circumstance
it is the ability to perform that advisory function that will add tremendous value above what any test provides, the leverage of being able to apply a proprietary diagnostics platform – and importantly, the data it generates. It is the ability to perform that advisory function that will add tremendous value above what any test provides.

Integrated Diagnostics Inc. and Biodesix Inc. with mass spectrometry has the tools for unraveling disease processes, and numerous players are quite visibly in or are getting into the business of providing medical knowledge and clinical decision support in pursuit of a huge payout for those who actually solve important disease mysteries. Of course one has to ask whether MS/MS is sufficient for the assigned task, and also whether the technology is ready for the kind of workload experienced in a clinical service compared to a research vehicle.  My impression (as a reviewer) is that it is not now the time to take this seriously.

Roche has not realized its intent with Ventana: failing to deliver on the promise of boosting Roche’s pipeline, which was a significant factor in the high price Roche paid. The combined company was to be “uniquely positioned to further expand Ventana’s business globally and together develop more cost-efficient, differentiated, and targeted medicines.  On the other hand,  Biodesix decided to use Veristrat to look back and analyze important trial data to try to ascertain which patients would benefit from ficlatuzumab (subset). The predictive effect for the otherwise unimpressive trial results was observed in both progression-free survival and overall survival endpoints, and encouraged the companies to conduct a proof-of-concept study of ficlatuzumab in combination with Tarceva in advanced Non Small Cell Lung Cancer Patients (NSCLC) selected using the Veristrat test.

A second phase of IVD evolution will be far more challenging to pharma, when the most accomplished companies begin to assemble and integrate much broader data
sets, thereby gaining knowledge sufficient to actually manage patients and dictate therapy, including drug selection. No individual physician has or will have access to all of this information on thousands of patients, combined with the informatics to tease out from trillions of data points the optimal personalized medical approach. When the IVD-origin knowledge integrator amasses enough data and understanding to guide therapy decisions in large categories, particularly drug choices, it will become more valuable than any of the drug suppliers.

This is an apparent reversal of fortune. The pharmaceutical industry has been considered the valued provider, while the IVD manufacturer has been the low valued cousin. Now, it is by an ability to make kore accurate the drug administration that the IVD company can control the drug bill, to the detriment of drug developers, by finding algorithms that generate equal-to-innovative-drug outcomes using generics for most of the patients, thereby limiting the margins of drug suppliers and the upsides for new drug discovery/development.

It is here that there appears to be a misunderstanding of the whole picture of the development of the healthcare industry.  The pharmaceutical industry had a high value added only insofar it could replace market leaders for treatment before or at the time of patent expiration, which largely depended either introducing a new class of drug, or by relieving the current drug in its class of undesired toxicities or “side effects”.  Otherwise, the drug armamentarium was time limited to the expiration date. In other words, the value was dependent on a window of no competition.  In addition, as the regulation of healthcare costs were tightening under managed care, the introduction of new products that were deemed to be only marginally better, could be substitued by “off-patent” drug products.

The other misunderstanding is related to the IVD sector.  Laboratory tests in the 1950’s were manual, and they could be done by “technicians” who might not have completed a specialized training in clinical laboratory sciences.  The first sign of progress was the introduction of continuous flow chemistry, with a sampling probe, tubing to bring the reacting reagents into a photocell, and the timing of the reaction controlled by a coiled glass tubing before introducing the colored product into a uv-visible photometer.  In perhaps a decade, the Technicon SMA 12 and 6 instruments were introduced that could do up to 18 tests from a single sample.

Part 2. Emergence of an IVD Clinical Automated Diagnostics Industry

Why tests are ordered

  1. Screening
  2. Diagnosis
  3. Monitoring

Historical Perspective

Case in Point 1:  Outstanding Contributions in Clinical Chemistry. 1991. Arthur Karmen.

Dr. Karmen was born in New York City in 1930. He graduated from the Bronx High School of Science in 1946 and earned an A.B. and M.D. in 1950 and 1954, respectively, from New York University. In 1952, while a medical student working on a summer project at Memorial-Sloan Kettering, he used paper chromatography of amino acids to demonstrate the presence of glutamic-oxaloacetic and glutaniic-pyruvic ransaminases (aspartate and alanine aminotransferases) in serum and blood. In 1954, he devised the spectrophotometric method for measuring aspartate aminotransferase in serum, which, with minor modifications, is still used for diagnostic testing today. When developing this assay, he studied the reaction of NADH with serum and demonstrated the presence of lactate and malate dehydrogenases, both of which were also later used in diagnosis. Using the spectrophotometric method, he found that aspartate aminotransferase increased in the period immediately after an acute myocardial infarction and did the pilot studies that showed its diagnostic utility in heart and liver diseases.  This became as important as the EKG. It was replaced in cardiology usage by the MB isoenzyme of creatine kinase, which was driven by Burton Sobel’s work on infarct size, and later by the troponins.

Case in point 2: Arterial Blood Gases.  Van Slyke. National Academy of Sciences.

The test is used to determine the pH of the blood, the partial pressure of carbon dioxide and oxygen, and the bicarbonate level. Many blood gas analyzers will also report concentrations of lactate, hemoglobin, several electrolytes, oxyhemoglobin, carboxyhemoglobin and methemoglobin. ABG testing is mainly used in pulmonology and critical care medicine to determine gas exchange which reflect gas exchange across the alveolar-capillary membrane.

DONALD DEXTER VAN SLYKE died on May 4, 1971, after a long and productive career that spanned three generations of biochemists and physicians. He left behind not only a bibliography of 317 journal publications and 5 books, but also more than 100 persons who had worked with him and distinguished themselves in biochemistry and academic medicine. His doctoral thesis, with Gomberg at University of Michigan was published in the Journal of the American Chemical Society in 1907.  Van Slyke received an invitation from Dr. Simon Flexner, Director of the Rockefeller Institute, to come to New York for an interview. In 1911 he spent a year in Berlin with Emil Fischer, who was then the leading chemist of the scientific world. He was particularly impressed by Fischer’s performing all laboratory operations quantitatively —a procedure Van followed throughout his life. Prior to going to Berlin, he published the  classic nitrous acid method for the quantitative determination of primary aliphatic amino groups,  the first of the many gasometric procedures devised by Van Slyke, and made possible the determination of amino acids. It was the primary method used to study amino acid

composition of proteins for years before chromatography. Thus, his first seven postdoctoral years were centered around the development of better methodology for protein composition and amino acid metabolism.

With his colleague G. M. Meyer, he first demonstrated that amino acids, liberated during digestion in the intestine, are absorbed into the bloodstream, that they are removed by the tissues, and that the liver alone possesses the ability to convert the amino acid nitrogen into urea.  From the study of the kinetics of urease action, Van Slyke and Cullen developed equations that depended upon two reactions: (1) the combination of enzyme and substrate in stoichiometric proportions and (2) the reaction of the combination into the end products. Published in 1914, this formulation, involving two velocity constants, was similar to that arrived at contemporaneously by Michaelis and Menten in Germany in 1913.

He transferred to the Rockefeller Institute’s Hospital in 2013, under Dr. Rufus Cole, where “Men who were studying disease clinically had the right to go as deeply into its fundamental nature as their training allowed, and in the Rockefeller Institute’s Hospital every man who was caring for patients should also be engaged in more fundamental study”.  The study of diabetes was already under way by Dr. F. M. Allen, but patients inevitably died of acidosis.  Van Slyke reasoned that if incomplete oxidation of fatty acids in the body led to the accumulation of acetoacetic and beta-hydroxybutyric acids in the blood, then a reaction would result between these acids and the bicarbonate ions that would lead to a lower than-normal bicarbonate concentration in blood plasma. The problem thus became one of devising an analytical method that would permit the quantitative determination of bicarbonate concentration in small amounts of blood plasma.  He ingeniously devised a volumetric glass apparatus that was easy to use and required less than ten minutes for the determination of the total carbon dioxide in one cubic centimeter of plasma.  It also was soon found to be an excellent apparatus by which to determine blood oxygen concentrations, thus leading to measurements of the percentage saturation of blood hemoglobin with oxygen. This found extensive application in the study of respiratory diseases, such as pneumonia and tuberculosis. It also led to the quantitative study of cyanosis and a monograph on the subject by C. Lundsgaard and Van Slyke.

In all, Van Slyke and his colleagues published twenty-one papers under the general title “Studies of Acidosis,” beginning in 1917 and ending in 1934. They included not only chemical manifestations of acidosis, but Van Slyke, in No. 17 of the series (1921), elaborated and expanded the subject to describe in chemical terms the normal and abnormal variations in the acid-base balance of the blood. This was a landmark in understanding acid-base balance pathology.  Within seven years after Van moved to the Hospital, he had published a total of fifty-three papers, thirty-three of them coauthored with clinical colleagues.

In 1920, Van Slyke and his colleagues undertook a comprehensive investigation of gas and electrolyte equilibria in blood. McLean and Henderson at Harvard had made preliminary studies of blood as a physico-chemical system, but realized that Van Slyke and his colleagues at the Rockefeller Hospital had superior techniques and the facilities necessary for such an undertaking. A collaboration thereupon began between the two laboratories, which resulted in rapid progress toward an exact physico-chemical description of the role of hemoglobin in the transport of oxygen and carbon dioxide, of the distribution of diffusible ions and water between erythrocytes and plasma,
and of factors such as degree of oxygenation of hemoglobin and hydrogen ion concentration that modified these distributions. In this Van Slyke revised his volumetric gas analysis apparatus into a manometric method.  The manometric apparatus proved to give results that were from five to ten times more accurate.

A series of papers on the CO2 titration curves of oxy- and deoxyhemoglobin, of oxygenated and reduced whole blood, and of blood subjected to different degrees of oxygenation and on the distribution of diffusible ions in blood resulted.  These developed equations that predicted the change in distribution of water and diffusible ions between blood plasma and blood cells when there was a change in pH of the oxygenated blood. A significant contribution of Van Slyke and his colleagues was the application of the Gibbs-Donnan Law to the blood—regarded as a two-phase system, in which one phase (the erythrocytes) contained a high concentration of nondiffusible negative ions, i.e., those associated with hemoglobin, and cations, which were not freely exchaThe importance of Vanngeable between cells and plasma. By changing the pH through varying the CO2 tension, the concentration of negative hemoglobin charges changed in a predictable amount. This, in turn, changed the distribution of diffusible anions such as Cl” and HCO3″ in order to restore the Gibbs-Donnan equilibrium. Redistribution of water occurred to restore osmotic equilibrium. The experimental results confirmed the predictions of the equations.

As a spin-off from the physico-chemical study of the blood, Van undertook, in 1922, to put the concept of buffer value of weak electrolytes on a mathematically exact basis.
This proved to be useful in determining buffer values of mixed, polyvalent, and amphoteric electrolytes, and put the understanding of buffering on a quantitative basis. A
monograph in Medicine entitled “Observation on the Courses of Different Types of Bright’s Disease, and on the Resultant Changes in Renal Anatomy,” was a landmark that
related the changes occurring at different stages of renal deterioration to the quantitative changes taking place in kidney function. During this period, Van Slyke and R. M. Archibald identified glutamine as the source of urinary ammonia. During World War II, Van and his colleagues documented the effect of shock on renal function and, with R. A. Phillips, developed a simple method, based on specific gravity, suitable for use in the field.

Over 100 of Van’s 300 publications were devoted to methodology. The importance of Van Slyke’s contribution to clinical chemical methodology cannot be overestimated.
These included the blood organic constituents (carbohydrates, fats, proteins, amino acids, urea, nonprotein nitrogen, and phospholipids) and the inorganic constituents (total cations, calcium, chlorides, phosphate, and the gases carbon dioxide, carbon monoxide, and nitrogen). It was said that a Van Slyke manometric apparatus was almost all the special equipment needed to perform most of the clinical chemical analyses customarily performed prior to the introduction of photocolorimeters and spectrophotometers for such determinations.

The progress made in the medical sciences in genetics, immunology, endocrinology, and antibiotics during the second half of the twentieth century obscures at times the progress that was made in basic and necessary biochemical knowledge during the first half. Methods capable of giving accurate quantitative chemical information on biological material had to be painstakingly devised; basic questions on chemical behavior and metabolism had to be answered; and, finally, those factors that adversely modified the normal chemical reactions in the body so that abnormal conditions arise that we characterize as disease states had to be identified.

Viewed in retrospect, he combined in one scientific lifetime (1) basic contributions to the chemistry of body constituents and their chemical behavior in the body, (2) a chemical understanding of physiological functions of certain organ systems (notably the respiratory and renal), and (3) how such information could be exploited in the
understanding and treatment of disease. That outstanding additions to knowledge in all three categories were possible was in large measure due to his sound and broadly based chemical preparation, his ingenuity in devising means of accurate measurements of chemical constituents, and the opportunity given him at the Hospital of the Rockefeller Institute to study disease in company with physicians.

In addition, he found time to work collaboratively with Dr. John P. Peters of Yale on the classic, two-volume Quantitative Clinical Chemistry. In 1922, John P. Peters, who had just gone to Yale from Van Slyke’s laboratory as an Associate Professor of Medicine, was asked by a publisher to write a modest handbook for clinicians describing useful chemical methods and discussing their application to clinical problems. It was originally to be called “Quantitative Chemistry in Clinical Medicine.” He soon found that it was going to be a bigger job than he could handle alone and asked Van Slyke to join him in writing it. Van agreed, and the two men proceeded to draw up an outline and divide up the writing of the first drafts of the chapters between them. They also agreed to exchange each chapter until it met the satisfaction of both.At the time it was published in 1931, it contained practically all that could be stated with confidence about those aspects of disease that could be and had been studied by chemical means. It was widely accepted throughout the medical world as the “Bible” of quantitative clinical chemistry, and to this day some of the chapters have not become outdated.

History of Laboratory Medicine at Yale University.

The roots of the Department of Laboratory Medicine at Yale can be traced back to John Peters, the head of what he called the “Chemical Division” of the Department of Internal Medicine, subsequently known as the Section of Metabolism, who co-authored with Donald Van Slyke the landmark 1931 textbook Quantitative Clinical Chemistry (2.3); and to Pauline Hald, research collaborator of Dr. Peters who subsequently served as Director of Clinical Chemistry at Yale-New Haven Hospital for many years. In 1947, Miss Hald reported the very first flame photometric measurements of sodium and potassium in serum (4). This study helped to lay the foundation for modern studies of metabolism and their application to clinical care.

The Laboratory Medicine program at Yale had its inception in 1958 as a section of Internal Medicine under the leadership of David Seligson. In 1965, Laboratory Medicine achieved autonomous section status and in 1971, became a full-fledged academic department. Dr. Seligson, who served as the first Chair, pioneered modern automation and computerized data processing in the clinical laboratory. In particular, he demonstrated the feasibility of discrete sample handling for automation that is now the basis of virtually all automated chemistry analyzers. In addition, Seligson and Zetner demonstrated the first clinical use of atomic absorption spectrophotometry. He was one of the founding members of the major Laboratory Medicine academic society, the Academy of Clinical Laboratory Physicians and Scientists.

Davenport fig 10.jpg

Case in Point 3.  Nathan Gochman.  Developer of Automated Chemistries.

Nathan Gochman, PhD, has over 40 years of experience in the clinical diagnostics industry. This includes academic teaching and research, and 30 years in the pharmaceutical and in vitro diagnostics industry. He has managed R & D, technical marketing and technical support departments. As a leader in the industry he was President of the American Association for Clinical Chemistry (AACC) and the National Committee for Clinical Laboratory Standards (NCCLS, now CLSI). He is currently a Consultant to investment firms and IVD companies.

Nathan Gochman

Nathan Gochman

The clinical laboratory has become so productive, particularly in chemistry and immunology, and the labor, instrument and reagent costs are well determined, that today a physician’s medical decisions are 80% determined by the clinical laboratory.  Medical information systems have lagged far behind.  Why is that?  Because the decision for a MIS has historical been based on billing capture.  Moreover, the historical use of chemical profiles were quite good at validating healthy dtatus in an outpatient population, but the profiles became restricted under Diagnostic Related Groups.    Thus, it came to be that the diagnostics was considered a “commodity”.  In order to be competitive, a laboratory had to provide “high complexity” tests that were drawn in by a large volume of “moderate complexity”tests.

Part 3. Biomarkers in Medical Practice

Case in Point 1.

A Solid Prognostic Biomarker

HDL-C: Target of Therapy or Fuggedaboutit?

Steven E. Nissen, MD, MACC, Peter Libby, MD

DisclosuresNovember 06, 2014

Steven E. Nissen, MD, MACC: I am Steve Nissen, chairman of the Department of Cardiovascular Medicine at the Cleveland Clinic. I am here with Dr Peter Libby, chief of cardiology at the Brigham and Women’s Hospital and professor of medicine at Harvard Medical School. We are going to discuss high-density lipoprotein cholesterol (HDL-C), a topic that has been very controversial recently. Peter, HDL-C has been a pretty good biomarker. The question is whether it is a good target.

Peter Libby, MD: Since the early days in Berkley, when they were doing ultracentrifugation, and when it was reinforced and put on the map by the Framingham Study,[1] we have known that HDL-C is an extremely good biomarker of prospective cardiovascular risk with an inverse relationship with all kinds of cardiovascular events. That is as solid a finding as you can get in observational epidemiology. It is a very reliable prospective marker. It’s natural that the pharmaceutical industry and those of us who are interested in risk reduction would focus on HDL-C as a target. That is where the controversies come in.

Dr Nissen: It has been difficult. My view is that the trials that have attempted to modulate HDL-C or the drugs they used have been flawed. Although the results have not been promising, the jury is yet out. Torcetrapib, the cholesteryl ester transfer protein (CETP) inhibitor developed by Pfizer, had anoff-target toxicity.[2] Niacin is not very effective, and there are a lot of downsides to the drug. That has been an issue, but people are still working on this. We have done some studies. We did our ApoA-1 Milano infusion study[3]about a decade ago, which showed very promising results with respect to shrinking plaques in coronary arteries. I remain open to the possibility that the right drug in the right trial will work.

Dr Libby: What do you do with the genetic data that have come out in the past couple of years? Sekar Kathiresan masterminded and organized an enormous collaboration[4] in which they looked, with contemporary genetics, at whether HDL had the genetic markers of being a causal risk factor. They came up empty-handed.

Dr Nissen: I am cautious about interpreting those data, like I am cautious about interpreting animal studies of atherosclerosis. We have both lived through this problem in which something works extremely well in animals but doesn’t work in humans, or it doesn’t work in animals but it works in humans. The genetic studies don’t seal the fate of HDL. I have an open mind about this. Drugs are complex. They work by complex mechanisms. It is my belief that what we have to do is test these hypotheses in well-designed clinical trials, which are rigorously performed with drugs that are clean—unlike torcetrapib—and don’t have off-target toxicities.

An Unmet Need: High Lp(a) Levels

Dr Nissen: I’m going to push back on that and make a couple of points. The HPS2-THRIVE study was flawed. They studied the wrong people. It was not a good study, and AIM-HIGH[8] was underpowered. I am not putting people on niacin. What do you do with a patient whose Lp(a) is 200 mg/dL?

Dr Libby: I’m waiting for the results of the PCSK9 and anacetrapib studies. You can tell me about evacetrapib.[9]Reducing Lp(a) is an unmet medical need. We both care for kindreds with high Lp(a) levels and premature coronary artery disease. We have no idea what to do with them other than to treat them with statins and lower their LDL-C levels.

Dr Nissen: I have taken a more cautious approach with respect to taking people off of niacin. If I have patients who are doing well and tolerating it (depending on why it was started), I am discontinuing niacin in some people. I am starting very few people on the drug, but I worry about the quality of the trial.

Dr Libby: So you are of the “don’t start don’t stop” school?

Dr Nissen: Yes. It’s difficult when the trial is fatally flawed. There were 11,000 patients from China in this study. I have known for years that if you give niacin to people of Asiatic ethnic descent, they have terrible flushing and they won’t continue the drug. One question is, what was the adherence? The adverse events would have been tolerable had there been efficacy. The concern here is that this study was destined to fail because they studied a low LDL/high HDL population, a group of people for whom niacin just isn’t used.

Triglycerides and HDL: Do We Have It Backwards?

Dr Libby: What about the recent genetic[10] and epidemiologic data that support triglycerides, and apolipoprotein C3 in particular as a causal risk factor? Have we been misled through all of the generations in whom we have been adjusting triglycerides for HDL-C and saying that triglycerides are not a causal risk factor because once we adjust for HDL, the risk goes away? Do you think we got it backwards?

Dr Nissen: The tricky factor here is that because of this intimate inverse relationship between triglycerides and HDL, we may be talking about the same phenomenon. That is one of the reasons that I am not certain we are not going to be able to find a therapy. What if you had a therapy that lowered triglycerides and raised HDL-C? Could that work? Could that combination be favorable? I want answers from rigorous, well-designed clinical trials that ask the right questions in the right populations. I am disappointed, just as I have been disappointed by the fibrate trials.[11,12] There is a class of drugs that raises HDL-C a little and lowers triglycerides a lot.

Dr Nissen: But the gemfibrozil studies (VA-HIT[13] and Helsinki Heart[14]) showed benefit.

The Dyslipidemia Bar Has Been Raised

Dr Libby: Those studies were from the pre-statin era. We both were involved in trials in which patients were on high-dose statins at baseline. Do you think that this is too high a bar?

Dr Nissen: The bar has been raised, and for the pharmaceutical industry, the studies that we need to find out whether lowering triglycerides or raising HDL is beneficial are going to be large. We are doing a study with evacetrapib. It has 12,000 patients. It’s fully enrolled. Evacetrapib is a very clean-looking drug. It doesn’t have such a long biological half-life as anacetrapib, so I am very encouraged that it won’t have that baggage of being around for 2-4 years. We’ve got a couple of shots on goal here. Don’t forget that we have multiple ongoing studies of HDL-C infusion therapies that are still under development. Those have some promise too. The jury is still out.

Dr Libby: We agree on the need to do rigorous, large-scale endpoint trials. Do the biomarker studies, but don’t wait to start the endpoint trial because that’s the proof in the pudding.

Dr Nissen: Exactly. We have had a little controversy about HDL-C. We often agree, but not always, and we may have a different perspective. Thanks for joining me in this interesting discussion of what will continue to be a controversial topic for the next several years until we get the results of the current ongoing trials.

Case in Point 2.

NSTEMI? Honesty in Coding and Communication?

Melissa Walton-Shirley

November 07, 2014

The complaint at ER triage: Weakness, fatigue, near syncope of several days’ duration, vomiting, and decreased sensorium.

The findings: O2sat: 88% on room air. BP: 88 systolic. Telemetry: Sinus tachycardia 120 bpm. Blood sugar: 500 mg/dL. Chest X ray: atelectasis. Urinalysis: pyuria. ECG: T-wave-inversion anterior leads. Echocardiography: normal left ventricular ejection fraction (LVEF) and wall motion. Troponin I: 0.3 ng/mL. CT angiography: negative for pulmonary embolism (PE). White blood cell count: 20K with left shift. Blood cultures: positive for Gram-negative rods.

The treatment: Intravenous fluids and IV levofloxacin—changed to ciprofloxacin.

The communication at discharge: “You had a severe urinary-tract infection and grew bacteria in your bloodstream. Also, you’ve had a slight heart attack. See your cardiologist immediately upon discharge-no more than 5 days from now.”

The diagnoses coded at discharge: Urosepsis and non-ST segment elevation MI (NSTEMI) 410.1.

One year earlier: This moderately obese patient was referred to our practice for a preoperative risk assessment. The surgery planned was a technically simple procedure, but due to the need for precise instrumentation, general endotracheal anesthesia (GETA) was being considered. The patient was diabetic, overweight, and short of air. A stress exam was equivocal for CAD due to poor exercise tolerance and suboptimal imaging. Upon further discussion, symptoms were progressive; therefore, cardiac cath was recommended, revealing angiographically normal coronaries and a predictably elevated left ventricular end diastolic pressure (LVEDP) in the mid-20s range. The patient was given a diagnosis of diastolic dysfunction, a prescription for better hypertension control, and in-depth discussion on exercise and the Mediterranean and DASH diets for weight loss. Symptoms improved with a low dose of diuretic. The surgery was completed without difficulty. Upon follow-up visit, the patient felt well, had lost a few pounds, and blood pressure was well controlled.

Five days after ER workup: While out of town, the patient developed profound weakness and went to the ER as described above. Fast forward to our office visit in the designated time frame of “no longer than 5 days’ postdischarge,” where the patient and family asked me about the “slight heart attack” that literally came on the heels of a normal coronary angiogram.

But the patient really didn’t have a “heart attack,” did they? The cardiologist aptly stated that it was likely nonspecific troponin I leak in his progress notes. Yet the hospitalist framed the diagnosis of NSTEMI as item number 2 in the final diagnoses.

The motivations on behalf of personnel who code charts are largely innocent and likely a direct result of the lack of understanding of the coding system on behalf of us as healthcare providers. I have a feeling, though, that hospitals aren’t anxious to correct this misperception, due to an opportunity for increased reimbursement. I contacted a director of a coding department for a large hospital who prefers to remain anonymous. She explained that NSTEMI ICD9 code 410.1 falls in DRG 282 with a weight of .7562. The diagnosis of “demand ischemia,” code 411.89, a slightly less inappropriate code for a nonspecific troponin I leak, falls in DRG 311 with a weight of .5662. To determine reimbursement, one must multiply the weight by the average hospital Medicare base rate of $5370. Keep in mind that each hospital’s base rate and corresponding payment will vary. The difference in reimbursement for a large hospital bill between these two choices for coding is substantial, at over $1000 difference ($4060 vs $3040).

Although hospitals that are already reeling from shrinking revenues will make more money on the front end by coding the troponin leak incorrectly as an NSTEMI, when multiple unnecessary tests are generated to follow up on a nondiagnostic troponin leak, the amount of available Centers for Medicare & Medicaid Services (CMS) reimbursement pie shrinks in the long run. Furthermore, this inappropriate categorization generates extreme concern on behalf of patients and family members that is often never laid to rest. The emotional toll of a “heart-attack” diagnosis has an impact on work fitness, quality of life, cost of medication, and the cost of future testing. If the patient lived for another 100 years, they will likely still list a “heart attack” in their medical history.

As a cardiologist, I resent the loose utilization of one of “my” heart-attack codes when it wasn’t that at all. At discharge, we need to develop a better way of communicating what exactly did happen. Equally important, we need to communicate what exactly didn’t happen as well.

Case in Point 3.

Blood Markers Predict CKD Heart Failure 

Published: Oct 3, 2014 | Updated: Oct 3, 2014

Elevated levels of high-sensitivity troponin T (hsTnT) and N-terminal pro-B-type natriuretic peptide (NT-proBNP) strongly predicted heart failure in patients with chronic kidney disease followed for a median of close to 6 years, researchers reported.

Compared with patients with the lowest blood levels of hsTnT, those with the highest had a nearly five-fold higher risk for developing heart failure and the risk was 10-fold higher in patients with the highest NT-proBNP levels compared with those with the lowest levels of the protein, researcher Nisha Bansal, MD, of the University of Washington in Seattle, and colleagues wrote online in the Journal of the American Society of Nephrology.

A separate study, published online in theJournal of the American Medical Association earlier in the week, also examined the comorbid conditions of heart and kidney disease, finding no benefit to the practice of treating cardiac surgery patients who developed acute kidney injury with infusions of the antihypertensive drug fenoldopam.

The study, reported by researcher Giovanni Landoni, MD, of the IRCCS San Raffaele Scientific Institute, Milan, Italy, and colleagues, was stopped early “for futility,” according to the authors, and the incidence of hypotension during drug infusion was significantly higher in patients infused with fenoldopam than placebo (26% vs. 15%; P=0.001).

Blood Markers Predict CKD Heart Failure

The study in patients with mild to moderate chronic kidney disease (CKD) was conducted to determine if blood markers could help identify patients at high risk for developing heart failure.

Heart failure is the most common cardiovascular complication among people with renal disease, occurring in about a quarter of CKD patients.

The two markers, hsTnT and NT-proBNP, are associated with overworked cardiac myocytes and have been shown to predict heart failure in the general population.

However, Bansal and colleagues noted, the markers have not been widely used in diagnosing heart failure among patients with CKD due to concerns that reduced renal excretion may raise levels of these markers, and therefore do not reflect an actual increase in heart muscle strain.

To better understand the importance of elevated concentrations of hsTnT and NT-proBNP in CKD patients, the researchers examined their association with incident heart failure events in 3,483 participants in the ongoing observational Chronic Renal Insufficiency Cohort (CRIC) study.

All participants were recruited from June 2003 to August 2008, and all were free of heart failure at baseline. The researchers used Cox regression to examine the association of baseline levels of hsTnT and NT-proBNP with incident heart failure after adjustment for demographic influences, traditional cardiovascular risk factors, makers of kidney disease, pertinent medication use, and mineral metabolism markers.

At baseline, hsTnT levels ranged from ≤5.0 to 378.7 pg/mL and NT-proBNP levels ranged from ≤5 to 35,000 pg/mL. Compared with patients who had undetectable hsTnT, those in the highest quartile (>26.5 ng/mL) had a significantly higher rate of heart failure (hazard ratio 4.77; 95% CI 2.49-9.14).

Compared with those in the lowest NT-proBNP quintile (<47.6 ng/mL), patients in the highest quintile (>433.0 ng/mL) experienced an almost 10-fold increase in heart failure risk (HR 9.57; 95% CI 4.40-20.83).

The researchers noted that these associations remained robust after adjustment for potential confounders and for the other biomarker, suggesting that while hsTnT and NT-proBNP are complementary, they may be indicative of distinct biological pathways for heart failure.

Even Modest Increases in NP-proBNP Linked to Heart Failure

The findings are consistent with an earlier analysis that included 8,000 patients with albuminuria in the Prevention of REnal and Vascular ENd-stage Disease (PREVEND) study, which showed that hsTnT was associated with incident cardiovascular events, even after adjustment for eGFR and severity of albuminuria.

“Among participants in the CRIC study, those with the highest quartile of detectable hsTnT had a twofold higher odds of left ventricular hypertrophy compared with those in the lowest quartile,” Bansal and colleagues wrote, adding that the findings were similar after excluding participants with any cardiovascular disease at baseline.

Even modest elevations in NT-proBNP were associated with significantly increased rates of heart failure, including in subgroups stratified by eGFR, proteinuria, and diabetic status.

“NT-proBNP regulates blood pressure and body fluid volume by its natriuretic and diuretic actions, arterial dilation, and inhibition of the renin-aldosterone-angiotensin system and increased levels of this marker likely reflect myocardial stress induced by subclinical changes in volume or pressure, even in persons without clinical disease,” the researchers wrote.

The researchers concluded that further studies are needed to develop and validate risk prediction tools for clinical heart failure in patients with CKD, and to determine the potential role of these two biomarkers in a heart failure risk prediction and prevention strategy.

Fenoldopam ‘Widely Promoted’ in AKI Cardiac Surgery Setting

The JAMA study examined whether the selective dopamine receptor D agonist fenoldopam mesylate can reduce the need for dialysis in cardiac surgery patients who develop acute kidney injury (AKI).

Fenoldopam induces vasodilation of the renal, mesenteric, peripheral, and coronary arteries, and, unlike dopamine, it has no significant affinity for D2 receptors, meaning that it theoretically induces greater vasodilation in the renal medulla than in the cortex, the researchers wrote.

“Because of these hemodynamic effects, fenoldopam has been widely promoted for the prevention and therapy of AKI in the United States and many other countries with apparent favorable results in cardiac surgery and other settings,” Landoni and colleagues wrote.

The drug was approved in 1997 by the FDA for the indication of in-hospital, short-term management of severe hypertension. It has not been approved for renal indications, but is commonly used off-label in cardiac surgery patients who develop AKI.

Although a meta analysis of randomized trials, conducted by the researchers, indicated a reduction in the incidence and progression of AKI associated with the treatment, Landoni and colleagues wrote that the absence of a definitive trial “leaves clinicians uncertain as to whether fenoldopam should be prescribed after cardiac surgery to prevent deterioration in renal function.”

To address this uncertainty, the researchers conducted a prospective, randomized, parallel-group trial in 667 patients treated at 19 hospitals in Italy from March 2008 to April 2013.

All patients had been admitted to ICUs after cardiac surgery with early acute kidney injury (≥50% increase of serum creatinine level from baseline or low output of urine for ≥6 hours). A total of 338 received fenoldopam by continuous intravenous infusion for a total of 96 hours or until ICU discharge, while 329 patients received saline infusions.

The primary end point was the rate of renal replacement therapy, and secondary end points included mortality (intensive care unit and 30-day mortality) and the rate of hypotension during study drug infusion.

Study Showed No Benefit, Was Stopped Early

Yale Lampoon – AA Liebow.   1954

Not As a Doctor
[Fourth Year]

These lyrics, sung by John Cole, Jack Gariepy and Ed Ransenhofer to music borrowed from Gilbert and Sullivan’s The Mikado, lampooned Averill Liebow, M.D., a pathologist noted for his demands on students. (CPC stands for clinical pathology conference.)

If you want to know what this is,
it’s a medical CPC
Where we give the house staff
the biz, for there’s no one so
wise as we!
We pathologists show them how,
Although it is too late now.
Our art is a sacred cow!

American physician, born 1911, Stryj in Galicia, Austria (now in Ukraine); died 1978.

Averill Abraham Liebow, born in Austria, was the “founding father” of pulmonary pathology in the United States. He started his career as a pathologist at Yale, where he remained for many years. In 1968 he moved to the University of California School of Medicine, San Diego, where he taught for 7 years as Professor and Chairman, Department of Pathology.

His studies include many classic studies of lung diseases. Best known of these is his famous classification of interstitial lung disease. He also published papers on sclerosing pneumocytoma, pulmonary alveolar proteinosis, meningothelial-like nodules, pulmonary hypertension, pulmonary veno-occlusive disease, lymphomatoid granulomatosis, pulmonary Langerhans cell histiocytosis, pulmonary epithelioid hemangioendothelioma and pulmonary hyalinizing granuloma .

As a Lieutenant Colonel in the US Army Medical Corps, He was a member of the Atomic Bomb Casualty Commission who studied the effects of the atomic bomb in Hiroshima and Nagasaki.

We thank Sanjay Mukhopadhyay, M.D., for information submitted.

As a resident at UCSD, Dr. Liebow held “Organ Recitals” every morning, including Mother’s day.  The organs had to be presented in specified order… heart, lung, and so forth.  On one occasion, we needed a heart for purification of human lactate dehydrogenase for a medical student project, so I presented the lung out of order.  Dr. Liebow asked where the heart was, and I told the group it was noprmal and I froze it for enzyme purification (smiles).  In the future show it to me first. He was generous to those who showed interest.  As I was also doing research in Nathan Kaplan’s laboratory, he made special arrangements for me to mentor Deborah Peters, the daughter of a pulmonary physician, and granddaughter of the Peters who collaborated with Van Slyke.  I mentored many students with great reward since then.  He could look at a slide and tell you what the x-ray looked like.  I didn’t encounter that again until he sent me to the Armed Forces Institute of Pathology, Washington, DC during the Vietnam War and Watergate, and I worked in Orthopedic Pathology with Lent C. Johnson.  He would not review a case without the x-ray, and he taught the radiologists.

Part 3

My Cancer Genome from Vanderbilt University: Matching Tumor Mutations to Therapies & Clinical Trials

Reporter: Aviva Lev-Ari, PhD, RN

My Cancer Genome from Vanderbilt University: Matching Tumor Mutations to Therapies & Clinical Trials


GenomOncology and Vanderbilt-Ingram Cancer Center (VICC) today announced a partnership for the exclusive commercial development of a decision support tool based on My Cancer Genome™, an online precision cancer medicine knowledge resource for physicians, patients, caregivers and researchers.

Through this collaboration, GenomOncology and VICC will enhance My Cancer Genome through the development of a new genomics content management tool. The MyCancerGenome.org website will remain free and open to the public. In addition, GenomOncology will develop a decision support tool based on My Cancer Genome™ data that will enable automated interpretation of mutations in the genome of a patient’s tumor, providing actionable results in hours versus days.

Vanderbilt-Ingram Cancer Center (VICC) launched My Cancer Genome™ in January 2011 as an integral part of their Personalized Cancer Medicine Initiative that helps physicians and researchers track the latest developments in precision cancer medicine and connect with clinical research trials. This web-based information tool is designed to quickly educate clinicians on the rapidly expanding list of genetic mutations that impact cancers and enable the research of treatment options based on specific mutations. For more information on My Cancer Genome™visit www.mycancergenome.org/about/what-is-my-cancer-genome.

Therapies based on the specific genetic alterations that underlie a patient’s cancer not only result in better outcomes but often have less adverse reactions

Up front fee

Nominal fee covers installation support, configuring the Workbench to your specification, designing and developing custom report(s) and training your team.

Per sample fee

GenomOncology is paid on signed-out clinical reports. This philosophy aligns GenomOncology with your Laboratory as we are incentivized to offer world-class support and solutions to differentiate your clinical NGS program. There is no annual license fee.

Part 4

Clinical Trial Services: Foundation Medicine & EmergingMed to Partner

Reporter: Aviva Lev-Ari, PhD, RN

Clinical Trial Services: Foundation Medicine & EmergingMed to Partner


Foundation Medicine and EmergingMed said today that they will partner to offer clinical trial navigation services for health care providers and their patients who have received one of Foundation Medicine’s tumor genomic profiling tests.

The firms will provide concierge services to help physicians

  • identify appropriate clinical trials for patients
  • based on the results of FoundationOne or FoundationOne Heme.

“By providing clinical trial navigation services, we aim to facilitate

  • timely and accurate clinical trial information and enrollment support services for physicians and patients,
  • enabling greater access to treatment options based on the unique genomic profile of a patient’s cancer

Currently, there are over 800 candidate therapies that target genomic alterations in clinical trials,

  • but “patients and physicians must identify and act on relevant options
  • when the patient’s clinical profile is aligned with the often short enrollment window for each trial.

These investigational therapies are an opportunity to engage patients with cancer whose cancer has progressed or returned following standard treatment in a most favorable second option after relapse.  The new service is unique in notifying when new clinical trials emerge that match a patient’s genomic and clinical profile.

Google signs on to Foundation Medicine cancer Dx by offering tests to employees

By Emily Wasserman

Diagnostics luminary Foundation Medicine ($FMI) is generating some upward momentum, fueled by growing revenues and the success of its clinical tests. Tech giant Google ($GOOG) has taken note and is signing onto the company’s cancer diagnostics by offering them to employees.

Foundation Medicine CEO Michael Pellini said during the company’s Q3 earnings call that Google will start covering its DNA tests for employees and their family members suffering from cancer as part of its health benefits portfolio, Reuters reports.

Both sides stand to benefit from the deal, as Google looks to keep a leg up on Silicon Valley competitors and Foundation Medicine expands its cancer diagnostics platform. Last month, Apple ($AAPL) and Facebook ($FB) announced that they would begin covering the cost of egg freezing for female employees. A diagnostics partnership and attractive health benefits could work wonders for Google’s employee retention rates and bottom line.

In the meantime, Cambridge, MA-based Foundation Medicine is charging full speed ahead with its cancer diagnostics platform after filing for an IPO in September 2013. The company chalked up 6,428 clinical tests during Q3 2014, an eye-popping 149% increase year over year, and brought in total revenue for the quarter of $16.4 million–a 100% leap from last year. Foundation Medicine credits the promising numbers in part to new diagnostic partnerships and extended coverage for its tests.

In January, the company teamed up with Novartis ($NVS) to help the drugmaker evaluate potential candidates for its cancer therapies. In April, Foundation Medicine announced that it would develop a companion diagnostic test for a Clovis Oncology ($CLVS) drug under development to treat patients with ovarian cancer, building on an ongoing collaboration between the two companies.

Foundation Medicine also has its sights set on China’s growing diagnostics market, inking a deal in October with WuXi PharmaTech ($WX) that allows the company to perform lab testing for its FoundationOne assay at WuXi’s Shanghai-based Genome Center.

a nod to the deal with Google during a corporate earnings call on Wednesday, according to a person who listened in. Pellini said Google employees were made aware of this new benefit last week.

Foundation Medicine teams with MD Anderson for new trial of cancer Dx

Second study to see if targeted therapy can change patient outcomes

August 15, 2014 | By   FierceDiagnostics

Foundation Medicine ($FMI) is teaming up with the MD Anderson Cancer Center in Texas for a new trial of the the Cambridge, MA-based company’s molecular diagnostic cancer test that targets therapies matched to individual patients.

The study is called IMPACT2 (Initiative for Molecular Profiling and Advanced Cancer Therapy) and is designed to build on results from the the first IMPACT study that found

  • 40% of the 1,144 patients enrolled had an identifiable genomic alteration.

The company said that

  • by matching specific gene alterations to therapies,
  • 27% of patients in the first study responded versus
  • 5% with an unmatched treatment, and
  • “progression-free survival” was longer in the matched group.

The FoundationOne molecular diagnostic test

  • combines genetic sequencing and data gathering
  • to help oncologists choose the best treatment for individual patients.

Costing $5,800 per test, FoundationOne’s technology can uncover a large number of genetic alterations for 200 cancer-related genes,

  • blending genomic sequencing, information and clinical practice.

“Based on the IMPACT1 data, a validated, comprehensive profiling approach has already been adopted by many academic and community-based oncology practices,” Vincent Miller, chief medical officer of Foundation Medicine, said in a release. “This study has the potential to yield sufficient evidence necessary to support broader adoption across most newly diagnosed metastatic tumors.”

The company got a boost last month when the New York State Department of Health approved Foundation Medicine’s two initial cancer tests: the FoundationOne test and FoundationOne Heme, which creates a genetic profile for blood cancers. Typically,

  • diagnostics companies struggle to win insurance approval for their tests
  • even after they gain a regulatory approval, leaving revenue growth relatively flat.

However, Foundation Medicine reported earlier this week its Q2 revenue reached $14.5 million compared to $5.9 million for the same period a year ago. Still,

  1. net losses continue to soar as the company ramps up
  2. its commercial and business development operation,
  • hitting $13.7 million versus a $10.1 million deficit in the second quarter of 2013.

Oncology

There has been a remarkable transformation in our understanding of

  • the molecular genetic basis of cancer and its treatment during the past decade or so.

In depth genetic and genomic analysis of cancers has revealed that

  • each cancer type can be sub-classified into many groups based on the genetic profiles and
  • this information can be used to develop new targeted therapies and treatment options for cancer patients.

This panel will explore the technologies that are facilitating our understanding of cancer, and

  • how this information is being used in novel approaches for clinical development and treatment.
Oncology _ Reprted by Dr. Aviva Lev-Ari, Founder, Leaders in Pharmaceutical Intelligence

Opening Speaker & Moderator:

Lynda Chin, M.D.
Department Chair, Department of Genomic Medicine
MD Anderson Cancer Center

  • Who pays for PM?
  • potential of Big data, analytics, Expert systems, so not each MD needs to see all cases, Profile disease to get same treatment
  • business model: IP, Discovery, sharing, ownership — yet accelerate therapy
  • security of healthcare data
  • segmentation of patient population
  • management of data and tracking innovations
  • platforms to be shared for innovations
  • study to be longitudinal,
  • How do we reconcile course of disease with PM
  • phinotyping the disease vs a Patient in wait for cure/treatment

Panelists:

Roy Herbst, M.D., Ph.D.
Ensign Professor of Medicine and Professor of Pharmacology;
Chief of Medical Oncology, Yale Cancer Center and Smilow Cancer Hospital

Development new drugs to match patient, disease and drug – finding the right patient for the right Clinical Trial

  • match patient to drugs
  • partnerships: out of 100 screened patients, 10 had the gene, 5 were able to attend the trial — without the biomarker — all 100 patients would participate for the WRONG drug for them (except the 5)
  • patients wants to participate in trials next to home NOT to have to travel — now it is in the protocol
  • Annotated Databases – clinical Trial informed consent – adaptive design of Clinical Trial vs protocol
  • even Academic MD can’t read the reports on Genomics
  • patients are treated in the community — more training to MDs
  • Five companies collaborating – comparison og 6 drugs in the same class
  • if drug exist and you have the patient — you must apply PM

Summary and Perspective:

The current changes in Biotechnology have been reviewed with an open question about the relationship of In Vitro Diagnostics to Biopharmaceuticals switching, with the potential, particularly in cancer and infectious diseases, to added value in targeted therapy by matching patients to the best potential treatment for a favorable outcome.

This reviewer does not see the movement of the major diagnostics leaders entering into the domain of direct patient care, even though there are signals in that direction.  The Roche example is perhaps the most interesting because Roche already became the elephant in the room after the introduction of Valium,  subsequently bought out Boehringer Mannheim Diagnostics to gain entry into the IVD market, and established a huge presence in Molecular Diagnostics early.  If it did anything to gain a foothold in the treatment realm, it would more likely forge a relationship with Foundation Medicine.  Abbott Laboratories more than a decade ago was overextended, and it had become the leader in IVD as a result of the specialty tests, but it fell into difficulties with quality control of its products in the high volume testing market, and acceeded to Olympus, Roche, and in the mid volume market to Beckman and Siemens.  Of course, Dupont and Kodak, pioneering companies in IVD, both left the market.

The biggest challenge in the long run is identified by the ability to eliminate many treatments that would be failures for a large number of patients. That has already met the proof of concept.  However, when you look at the size of the subgroups, we are not anywhere near a large scale endeavor.  In addition, there is a lot that has to be worked out that is not related to genomic expression by the “classic” model, but has to take into account the emrging knowledge and greater understanding of regulation of cell metabolism, not only in cancer, but also in chronic inflammatory diseases.

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The History of Infectious Diseases and Epidemiology in the late 19th and 20th Century

Curator: Larry H Bernstein, MD, FCAP

 

Infectious diseases are a part of the history of English, French, and Spanish Colonization of the Americas, and of the Slave Trade.  The many plagues in the new and old world that have effected the course of history from ancient to modern times were known to the Egyptians, Greeks, Chinese, crusaders, explorers, Napoleon, and had familiar ties of war, pestilence, and epidemic. Our coverage is mainly concerned with the scientific and public health consequences of these events that preceded WWI and extended to the Vietnam War, and is highlighted by the invention of a public health system world wide.

The Armed Forces Institute of Pathology (AFIP) closed its’ doors on September 15, 2011. It was founded as the Army Medical Museum on May 21, 1862, to collect pathological specimens along with their case histories.

The information from the case files of the pathological specimens from the Civil War was compared with Army pensions records and compiled into the six-volume Medical and Surgical History of the War of the Rebellion, an early study of wartime medicine.

In 1900, museum curator Walter Reed led the commission which proved that a mosquito was the vector for Yellow Fever, beginning the mosquito eradication campaigns throughout most of the twentieth century.

WalterReed

WalterReed

Another museum curator, Frederick Russell, conducted clinical trials on the typhoid vaccine in 1907, resulting in the U.S. Army to be the first Army vaccinated against typhoid.

Increased emphasis on pathology during the twentieth century turned the museum, renamed the Armed Forces Institute of Pathology in 1949, into an international resource for pathology and the study of disease. AFIP’s pathological collections have been used, for example, in the characterization of the 1918-influenza virus in 1997.

Prior to moving to the Walter Reed Army Medical Center, the AFIP was located at the Army Medical Museum and Library on the Mall (1887-1969), and earlier as Army Medical Museum in Ford’s Theatre (1867-1886).

Army Medical Museum and Library on the Mall

Army Medical Museum and Library on the Mall

This institution, originally the Library of the Surgeon General’s Office (U.S. Army), gained its present name and was transferred from the Army to the Public Health Service in 1956. In 1962, it moved to its own Bethesda site after sharing space for nearly 100 years with other Army units, first at the former Ford’s Theatre building and then at the Army Medical Museum and Library on the Mall. Rare books and other holdings that had been sent to Cleveland for safekeeping during World War II were also reunited with the main collection at that time.

The National Museum of Health and Medicine, established in 1862, inspires interest in and promotes the understanding of medicine — past, present, and future — with a special emphasis on tri-service American military medicine. As a National Historic Landmark recognized for its ongoing value to the health of the military and to the nation, the Museum identifies, collects, and preserves important and unique resources to support a broad agenda of innovative exhibits, educational programs, and scientific, historical, and medical research. NMHM is a headquarters element of the U.S. Army Medical Research and Materiel Command. NMHM’s newest exhibit installations showcase the institution’s 25-million object collection, focusing on topics as diverse as innovations in military medicine, traumatic brain injury, anatomy and pathology, military medicine during the Civil War, the assassination of Abraham Lincoln (including the bullet that killed him), human identification and a special exhibition on the Museum’s own major milestone—the 150th anniversary of the founding of the Army Medical Museum. Objects on display will include familiar artifacts and specimens: the bullet that killed Lincoln and a leg showing the effects of elephantiasis, as well as recent finds in the collection—all designed to astound visitors to the new Museum.

Today, the National Library of Medicine houses the largest collection of print and non-print materials in the history of the health sciences in the United States, and maintains an active program of exhibits and public lectures. Most of the archival and manuscript material dates from the 17th century; however, the Library owns about 200 pre-1601 Western and Islamic manuscripts. Holdings include pre-1914 books, pre-1871 journals, archives and modern manuscripts, medieval and Islamic manuscripts, a collection of printed books, manuscripts, and visual material in Japanese, Chinese, and Korean; historical prints, photographs, films, and videos; pamphlets, dissertations, theses, college catalogs, and government documents.

The oldest item in the Library is an Arabic manuscript on gastrointestinal diseases from al-Razi’s The Comprehensive Book on Medicine (Kitab al-Hawi fi al-tibb) dated 1094. Significant modern collections include the papers of U.S. Surgeons General, including C. Everett Koop, and the papers of Nobel Prize-winning scientists, particularly those connected with NIH.

As part of its Profiles in Science project, the National Library of Medicine has collaborated with the Churchill Archives Centre to digitize and make available over the World Wide Web a selection of the Rosalind Franklin Papers for use by educators and researchers. This site provides access to the portions of the Rosalind Franklin Papers, which range from 1920 to 1975. The collection contains photographs, correspondence, diaries, published articles, lectures, laboratory notebooks, and research notes.

Rosalind Franklin

Rosalind Franklin

Rosalind Franklin

Rosalind Franklin

Rosalind Franklin

“Science and everyday life cannot and should not be separated. Science, for me, gives a partial explanation of life. In so far as it goes, it is based on fact, experience, and experiment. . . . I agree that faith is essential to success in life, but I do not accept your definition of faith, i.e., belief in life after death. In my view, all that is necessary for faith is the belief that by doing our best we shall come nearer to success and that success in our aims (the improvement of the lot of mankind, present and future) is worth attaining.”

–Rosalind Franklin in a letter to Ellis Franklin, ca. summer 1940

Smallpox

Although some disliked mandatory smallpox vaccination measures, coordinated efforts against smallpox went on in the United States after 1867, and the disease continued to diminish in the wealthy countries. By 1897, smallpox had largely been eliminated from the United States. In Northern Europe a number of countries had eliminated smallpox by 1900, and by 1914, the incidence in most industrialized countries had decreased to comparatively low levels. Vaccination continued in industrialized countries, until the mid to late 1970s as protection against reintroduction. Australia and New Zealand are two notable exceptions; neither experienced endemic smallpox and never vaccinated widely, relying instead on protection by distance and strict quarantines.

In 1966 an international team, the Smallpox Eradication Unit, was formed under the leadership of an American, Donald Henderson. In 1967, the World Health Organization intensified the global smallpox eradication by contributing $2.4 million annually to the effort, and adopted the new disease surveillance method promoted by Czech epidemiologist Karel Raška. Two-year old Rahima Banu of Bangladesh (pictured) was the last person infected with naturally occurring Variola major, in 1975

The global eradication of smallpox was certified, based on intense verification activities in countries, by a commission of eminent scientists on 9 December 1979 and subsequently endorsed by the World Health Assembly on 8 May 1980. The first two sentences of the resolution read:

Having considered the development and results of the global program on smallpox eradication initiated by WHO in 1958 and intensified since 1967 … Declares solemnly that the world and its peoples have won freedom from smallpox, which was a most devastating disease sweeping in epidemic form through many countries since earliest time, leaving death, blindness and disfigurement in its wake and which only a decade ago was rampant in Africa, Asia and South America.

—World Health Organization, Resolution WHA33.3

Anthrax

Anthrax is an acute disease caused by the bacterium Bacillus anthracis. Most forms of the disease are lethal, and it affects both humans and other animals. Effective vaccines against anthrax are now available, and some forms of the disease respond well to antibiotic treatment.

Like many other members of the genus Bacillus, B. anthracis can form dormant endospores (often referred to as “spores” for short, but not to be confused with fungal spores) that are able to survive in harsh conditions for decades or even centuries. Such spores can be found on all continents, even Antarctica. When spores are inhaled, ingested, or come into contact with a skin lesion on a host, they may become reactivated and multiply rapidly.

Anthrax commonly infects wild and domesticated herbivorous mammals that ingest or inhale the spores while grazing. Ingestion is thought to be the most common route by which herbivores contract anthrax. Carnivores living in the same environment may become infected by consuming infected animals. Diseased animals can spread anthrax to humans, either by direct contact (e.g., inoculation of infected blood to broken skin) or by consumption of a diseased animal’s flesh.

Anthrax does not spread directly from one infected animal or person to another; it is spread by spores. These spores can be transported by clothing or shoes. The body of an animal that had active anthrax at the time of death can also be a source of anthrax spores. Owing to the hardiness of anthrax spores, and their ease of production in vitro, they are extraordinarily well suited to use (in powdered and aerosol form) as biological weapons.

Bacillus anthracis is a rod-shaped, Gram-positive, aerobic bacterium about 1 by 9 μm in size. It was shown to cause disease by Robert Koch in 1876 when he took a blood sample from an infected cow, isolated the bacteria and put them into a mouse. The bacterium normally rests in endospore form in the soil, and can survive for decades in this state. Once ingested or placed in an open wound, the bacterium begins multiplying inside the animal or human and typically kills the host within a few days or weeks. The endospores germinate at the site of entry into the tissues and then spread by the circulation to the lymphatics, where the bacteria multiply.

Robert Koch

Robert Koch

Veterinarians can often tell a possible anthrax-induced death by its sudden occurrence, and by the dark, nonclotting blood that oozes from the body orifices. Bacteria that escape the body via oozing blood or through the opening of the carcass may form hardy spores. One spore forms per one vegetative bacterium. Once formed, these spores are very hard to eradicate.

The lethality of the anthrax disease is due to the bacterium’s two principal virulence factors: the poly-D-glutamic acid capsule, which protects the bacterium from phagocytosis by host neutrophils, and the tripartite protein toxin, called anthrax toxin. Anthrax toxin is a mixture of three protein components: protective antigen (PA), edema factor (EF), and lethal factor (LF). PA plus LF produces lethal toxin, and PA plus EF produces edema toxin. These toxins cause death and tissue swelling (edema), respectively.

To enter the cells, the edema and lethal factors use another protein produced by B. anthracis called protective antigen, which binds to two surface receptors on the host cell. A cell protease then cleaves PA into two fragments: PA20 and PA63. PA20 dissociates into the extracellular medium, playing no further role in the toxic cycle. PA63 then oligomerizes with six other PA63 fragments forming a heptameric ring-shaped structure named a prepore.

Once in this shape, the complex can competitively bind up to three EFs or LFs, forming a resistant complex. Receptor-mediated endocytosis occurs next, providing the newly formed toxic complex access to the interior of the host cell. The acidified environment within the endosome triggers the heptamer to release the LF and/or EF into the cytosol.

Edema factor is a calmodulin-dependent adenylate cyclase. Adenylate cyclase catalyzes the conversion of ATP into cyclic AMP (cAMP) and pyrophosphate. The complexation of adenylate cyclase with calmodulin removes calmodulin from stimulating calcium-triggered signaling. LF inactivates neutrophils so they cannot phagocytose bacteria. Anthrax causes vascular leakage of fluid and cells, and ultimately hypovolemic shock and septic shock.

Occupational exposure to infected animals or their products (such as skin, wool, and meat) is the usual pathway of exposure for humans. Workers who are exposed to dead animals and animal products are at the highest risk, especially in countries where anthrax is more common. Anthrax in livestock grazing on open range where they mix with wild animals still occasionally occurs in the United States and elsewhere. Many workers who deal with wool and animal hides are routinely exposed to low levels of anthrax spores, but most exposure levels are not sufficient to develop anthrax infections. The body’s natural defenses presumably can destroy low levels of exposure. These people usually contract cutaneous anthrax if they catch anything.

Throughout history, the most dangerous form of inhalational anthrax was called woolsorters’ disease because it was an occupational hazard for people who sorted wool. Today, this form of infection is extremely rare, as almost no infected animals remain. The last fatal case of natural inhalational anthrax in the United States occurred in California in 1976, when a home weaver died after working with infected wool imported from Pakistan. Gastrointestinal anthrax is exceedingly rare in the United States, with only one case on record, reported in 1942, according to the Centers for Disease Control and Prevention.

Various techniques are used for the direct identification of B. anthracis in clinical material. Firstly, specimens may be Gram stained. Bacillus spp. are quite large in size (3 to 4 μm long), they grow in long chains, and they stain Gram-positive. To confirm the organism is B. anthracis, rapid diagnostic techniques such as polymerase chain reaction-based assays and immunofluorescence microscopy may be used.

All Bacillus species grow well on 5% sheep blood agar and other routine culture media. Polymyxin-lysozyme-EDTA-thallous acetate can be used to isolate B. anthracis from contaminated specimens, and bicarbonate agar is used as an identification method to induce capsule formation. Bacillus spp. usually grow within 24 hours of incubation at 35 °C, in ambient air (room temperature) or in 5% CO2. If bicarbonate agar is used for identification, then the medium must be incubated in 5% CO2.

  1. anthracis colonies are medium-large, gray, flat, and irregular with swirling projections, often referred to as having a “medusa head” appearance, and are not hemolytic on 5% sheep blood agar. The bacteria are not motile, susceptible to penicillin, and produce a wide zone of lecithinase on egg yolk agar. Confirmatory testing to identify B. anthracis includes gamma bacteriophage testing, indirect hemagglutination, and enzyme linked immunosorbent assay to detect antibodies. The best confirmatory precipitation test for anthrax is the Ascoli test.

Vaccines against anthrax for use in livestock and humans have had a prominent place in the history of medicine, from Pasteur’s pioneering 19th-century work with cattle (the second effective vaccine ever) to the controversial 20th century use of a modern product (BioThrax) to protect American troops against the use of anthrax in biological warfare. Human anthrax vaccines were developed by the Soviet Union in the late 1930s and in the US and UK in the 1950s. The current FDA-approved US vaccine was formulated in the 1960s.

If a person is suspected as having died from anthrax, every precaution should be taken to avoid skin contact with the potentially contaminated body and fluids exuded through natural body openings. The body should be put in strict quarantine and then incinerated. A blood sample should then be collected and sealed in a container and analyzed in an approved laboratory to ascertain if anthrax is the cause of death. Microscopic visualization of the encapsulated bacilli, usually in very large numbers, in a blood smear stained with polychrome methylene blue (McFadyean stain) is fully diagnostic, though culture of the organism is still the gold standard for diagnosis.

Full isolation of the body is important to prevent possible contamination of others. Protective, impermeable clothing and equipment such as rubber gloves, rubber apron, and rubber boots with no perforations should be used when handling the body. Disposable personal protective equipment and filters should be autoclaved, and/or burned and buried.

Anyone working with anthrax in a suspected or confirmed victim should wear respiratory equipment capable of filtering this size of particle or smaller. The US National Institute for Occupational Safety and Health – and Mine Safety and Health Administration-approved high-efficiency respirator, such as a half-face disposable respirator with a high-efficiency particulate air filter, is recommended.

All possibly contaminated bedding or clothing should be isolated in double plastic bags and treated as possible biohazard waste. The victim should be sealed in an airtight body bag. Dead victims who are opened and not burned provide an ideal source of anthrax spores. Cremating victims is the preferred way of handling body disposal.

Until the 20th century, anthrax infections killed hundreds of thousands of animals and people worldwide each year. French scientist Louis Pasteur developed the first effective vaccine for anthrax in 1881.

louis-pasteur

louis-pasteur

As a result of over a century of animal vaccination programs, sterilization of raw animal waste materials, and anthrax eradication programs in United States, Canada, Russia, Eastern Europe, Oceania, and parts of Africa and Asia, anthrax infection is now relatively rare in domestic animals. Anthrax is especially rare in dogs and cats, as is evidenced by a single reported case in the United States in 2001.

Anthrax outbreaks occur in some wild animal populations with some regularity. The disease is more common in countries without widespread veterinary or human public health programs. In the 21st century, anthrax is still a problem in less developed countries.

  1. anthracis bacterial spores are soil-borne. Because of their long lifespan, spores are present globally and remain at the burial sites of animals killed by anthrax for many decades. Disturbed grave sites of infected animals have caused reinfection over 70 years after the animal’s interment.

Cholera

This is an acute diarrheal infection that can kill within a matter of hours if untreated. Oral rehydration therapy — drinking water mixed with salts and sugar. But researchers at EPFL — the Swiss Federal Institute of Technology in Lausanne — say using rice starch instead of sugar with the rehydration salts could reduce bacterial toxicity by almost 75 percent. That would make the microbe less likely to infect a patient’s family and friends if they are exposed to any body fluids.

The World Health Organization says cholera, a water-borne bacterium, infects three to five million people every year, and the severe dehydration it causes leads to as many as 120,000 deaths.

Cholera is an acute diarrheal disease caused by the water borne bacteria Vibrio cholerae O1 or O139 (V. cholerae). Infection is mainly through ingestion of contaminated water or food. The V cholerae passes through the stomach, colonizes the upper part of the small intestine, penetrates the mucus layer, and secretes cholera toxin which affects the small intestine.

Clinically, the majority of cholera episodes are characterized by a sudden onset of massive diarrhea and vomiting accompanied by the loss of profuse amounts of protein-free fluid with electrolytes. The resulting dehydration produces tachycardia, hypotension, and vascular collapse, which can lead to sudden death. The diagnosis of cholera is commonly established by isolating the causative organism from the stools of infected individuals

There are an estimated 3–5 million cholera cases and 100 000–120 000 deaths due to cholera every year.

Up to 80% of cases can be successfully treated with oral rehydration salts.

Effective control measures rely on prevention, preparedness and response.

Provision of safe water and sanitation is critical in reducing the impact of cholera and other waterborne diseases.

Oral cholera vaccines are considered an additional means to control cholera, but should not replace conventional control measures.

During the 19th century, cholera spread across the world from its original reservoir in the Ganges delta in India. Six subsequent pandemics killed millions of people across all continents. The current (seventh) pandemic started in South Asia in 1961, and reached Africa in 1971 and the Americas in 1991. Cholera is now endemic in many countries.

INDIA-ENVIRONMENT-POLUTION

INDIA-ENVIRONMENT-POLUTION

In its extreme manifestation, cholera is one of the most rapidly fatal infectious illnesses known. Within 3–4 hours of onset of symptoms, a previously healthy person may become severely dehydrated and if not treated may die within 24 hours (WHO, 2010). The disease is one of the most researched in the world today; nevertheless, it is still an important public health problem despite more than a century of study, especially in developing tropical countries. Cholera is currently listed as one of three internationally quarantinable diseases by the World Health Organization (WHO), along with plague and yellow fever (WHO, 2000a).

Two serogroups of V. cholerae – O1 and O139 – cause outbreaks. V. cholerae O1 causes the majority of outbreaks, while O139 – first identified in Bangladesh in 1992 – is confined to South-East Asia.

Non-O1 and non-O139 V. cholerae can cause mild diarrhoea but do not generate epidemics.

The main reservoirs of V. cholerae are people and aquatic sources such as brackish water and estuaries, often associated with algal blooms. Recent studies indicate that global warming creates a favorable environment for the bacteria.

Socioeconomic and demographic factors enhance the vulnerability of a population to infection and contribute to epidemic spread. Such factors also mandate the extent to which the disease will reach epidemic proportions and also modulate the size of the epidemic.Known population level (local-level) risk factors of cholera include poverty, lack of development, high population density, low education, and lack of previous exposure. Cholera diffuses rapidly in environments that lack basic infrastructure with regard to access to safe water and proper sanitation. The cholera vibrios can survive and multiply outside the human body and can spread rapidly in environments where living conditions are overcrowded and where there is no safe disposal of solid waste, liquid waste, and human feces.

Mapping the locations of cholera victims, John Snow was able to trace the cause of the disease to a contaminated water source. Surprisingly, this was done 20 years before Koch and Pasteur established the beginnings of microbiology (Koch, 1884).

John Snow's  map

John Snow’s map

Yellow Fever

Yellow fever virus was probably introduced into the New World via ships carrying slaves from West Africa. Throughout the 18th and 19th centuries, regular and devastating epidemics of yellow fever occurred across the Caribbean, Central and South America, the southern United States and Europe. The Yellow Fever Commission, founded as a consequence of excessive disease mortality during the Spanish– American War (1898), concluded that the best way to control the disease was to control the mosquito. William Gorgas successfully eradicated yellow fever from Havana by destroying larval breeding sites and this strategy of source reduction was then successfully used to reduce disease problems and thus finally permit the construction of the Panama Canal in 1904. Success was due largely to a top-down, military approach involving strict supervision and discipline (Gorgas, 1915). In 1946, an intensive Aedes aegypti eradication campaign was initiated in the Americas, which succeeded in reducing vector populations to undetectable levels throughout most of its range.

The production of an effective vaccine in the 1930s led to a change of emphasis from vector control to vaccination for the control of yellow fever. Vaccination campaigns almost eliminated urban yellow fever but incomplete coverage, as with incomplete anti-vectorial measures previously, meant the disease persisted, and outbreaks occurred in remote forest areas.

It was acknowledged by the Health Organization of the League of Nations (the forerunner to the World Health Organization (WHO)) that yellow fever was a severe burden on endemic countries. The work of Soper and the Brazilian Cooperative Yellow Fever Service (Soper, 1934, 1935a, b) began to determine the geographical extent of the disease, specifically in Brazil. Regional maps of disease outbreaks were published by Sawyer (1934), but it was not until after the formation of the WHO that a global map of yellow fever endemicity was first constructed (van Rooyen and Rhodes, 1948). This map was based on expert opinion (United Nations Relief and Rehabilitation Administration/Expert Commission on Quarantine) and serological surveys. The present-day distribution map for yellow fever is still essentially a modified version of this map.

global yellow fever risk map

global yellow fever risk map

Yellow fever is conspicuously absent from Asia. Although there is some evidence that other flaviviruses may offer cross-protection against yellow fever (Gordon-Smith et al., 1962), why yellow fever does not occur in Asia is still unexplained.

It has been estimated that the currently circulating strains of YFV arose in Africa within the last 1,500 years and emerged in the Americas following the slave trade approximately 300–400 years ago. These viruses then spread westwards across the continent and persist there to this day in the jungles of South America.

The 17D live-attenuated vaccine still in use today was developed in 1936, and a single dose confers immunity for at least ten years in 95% of the cases. In a bid to contain the spread of the disease, travellers to countries within endemic areas or those thought to be ‘at risk’ require a certificate of vaccination. The yellow fever certificate is the only internationally regulated certification supported by the WHO. The effectiveness of the vaccine reduces the need for anti-vectorial campaigns directed specifically against yellow fever. As the same major vector is involved, control of Aedes aegypti for dengue reduction will also reduce yellow fever transmission where both diseases co-occur, especially within urban settings.

Dengue

Probable epidemics of dengue fever have been recorded from Africa, Asia, Europe and the Americas since the early 19th century (Armstrong, 1923). Although it is rarely fatal, up to 90% of the

population of an infected area can be incapacitated during the course of an epidemic (Armstrong, 1923; Siler et al., 1926). Widespread movements of troops and refugees during and after World War II introduced vectors and viruses into many new areas. Dengue fever has unsurprisingly been mistaken for yellow fever as well as other diseases including influenza, measles, typhoid and malaria. It is rarely fatal and survivors appear to have lifelong immunity to the homologous serotype.

Far more serious is dengue haemorrhagic fever (DHF), where additional symptoms develop, including haemorrhaging and shock. The mortality from DHF can exceed 30% if appropriate care is unavailable. The most significant risk factor for DHF is when secondary infection with a different serotype occurs in people who have already had, and recovered from, a primary dengue infection.

Dengue has adapted to changes in human demography very effectively. The main vector of dengue is the anthropophilic Aedes aegypti, which is found in close association with human settlements throughout the tropics, breeding mainly in containers in and around, and feeding almost exclusively on humans. As a result, dengue is essentially a disease of tropical urban areas. Before 1970, only nine countries had experienced DHF epidemics, but by 1995 this number had increased fourfold (WHO, 2001). Dengue case numbers have increased considerably since the 1960s; by the end of the 20th century an estimated 50 million cases of dengue fever and 500 000 cases of DHF were occurring every year (WHO, 2001).

The appearance of DHF stimulated large amounts of dengue research, which established the existence of the four serotypes and the range of competent vectors, and led to the adoption of Aedes aegypti control programs in some areas (particularly South-East Asia) (Kilpatrick et al., 1970).

There have been several attempts to estimate the economic impact of dengue: the 1977 epidemic in Puerto Rico was thought to have cost between $6.1 and $15.6 million ($26–$31 per clinical case) (Von Allmen et al., 1979), while the 1981 Cuban epidemic (with a total of 344 203 reported cases) cost about $103 million (around $299 per case) (Kouri et al., 1989).

There is no cure for dengue fever or for DHF. Currently, the only treatment is symptomatic, but this can reduce mortality from DHF to less than 1% (WHO, 2002). Unfortunately, the extent of dengue epidemics means that local public health services are often overwhelmed by the demands for treatment.

Malaria

Malaria is a serious and sometimes fatal disease caused by a parasite that infects a mosquito. People who get malaria are typically very sick with high fevers, shaking chills, and flu-like illness. About 1,500 cases of malaria are diagnosed in the United States each year. The vast majority of cases in the United States are in travelers and immigrants returning from countries where malaria transmission occurs, many from sub-Saharan Africa and South Asia. Malaria has been noted for more than 4,000 years. It became widely recognized in Greece by the 4th century BCE, and it was responsible for the decline of many of the city-state populations. Hippocrates noted the principal symptoms. In the Susruta, a Sanskrit medical treatise, the symptoms of malarial fever were described and attributed to the bites of certain insects. A number of Roman writers attributed malarial diseases to the swamps.

Following their arrival in the New World, Spanish Jesuit missionaries learned from indigenous Indian tribes of a medicinal bark used for the treatment of fevers. With this bark, the Countess of Chinchón, the wife of the Viceroy of Peru, was cured of her fever. The bark from the tree was then called Peruvian bark and the tree was named Cinchona after the countess. The medicine from the bark is now known as the antimalarial, quinine. Along with artemisinins, quinine is one of the most effective antimalarial drugs available today.

quinquin acalisaya

quinquin acalisaya

Cinchona officinalis is a medicinal plant, one of several Cinchona species used for the production of quinine, which is an anti-fever agent. It is especially useful in the prevention and treatment of malaria. Cinchona calisaya is the tree most cultivated for quinine production.

There are a number of other alkaloids that are extracted from this tree. They include cinchonine, cinchonidine and quinidine  (Wikipedia)

Charles Louis Alphonse Laveran, a French army surgeon stationed in Constantine, Algeria, was the first to notice parasites in the blood of a patient suffering from malaria in 1880. Laveran was awarded the Nobel Prize in 1907.

Alphonse Laveran

Alphonse Laveran

Camillo Golgi, an Italian neurophysiologist, established that there were at least two forms of the disease, one with tertian periodicity (fever every other day) and one with quartan periodicity (fever every third day). He also observed that the forms produced differing numbers of merozoites (new parasites) upon maturity and that fever coincided with the rupture and release of merozoites into the blood stream. He was awarded a Nobel Prize in Medicine for his discoveries in neurophysiology in 1906.

malaria_lifecycle.

malaria_lifecycle.

Ookinete,_sporozoite,_merozoite

Ookinete,_sporozoite,_merozoite

The Italian investigators Giovanni Batista Grassi and Raimondo Filetti first introduced the names Plasmodium vivax and P. malariae for two of the malaria parasites that affect humans in 1890. Laveran had believed that there was only one species, Oscillaria malariae. William H. Welch, reviewed the subject and, in 1897, he named the malignant tertian malaria parasite P. falciparum. In 1922, John William Watson Stephens described the fourth human malaria parasite, P. ovale. P. knowlesi was first described by Robert Knowles and Biraj Mohan Das Gupta in 1931 in a long-tailed macaque, but the first documented human infection with P. knowlesi was in 1965.

Anopheles mosquito

Anopheles mosquito

Ronald Ross, a British officer in the Indian Medical Service, was the first to demonstrate that malaria parasites could be transmitted from infected patients to mosquitoes in 1997. In further work with bird malaria, Ross showed that mosquitoes could transmit malaria parasites from bird to bird. This necessitated a sporogonic cycle (the time interval during which the parasite developed in the mosquito). Ross was awarded the Nobel Prize in 1902.

Ronald Ross_1899

Ronald Ross_1899

A team of Italian investigators led by Giovanni Batista Grassi, collected Anopheles claviger mosquitoes and fed them on malarial patients. The complete sporogonic cycle of Plasmodium falciparum, P. vivax, and P. malariae were demonstrated. Mosquitoes infected by feeding on a patient in Rome were sent to London in 1999, where they fed on two volunteers, both of whom developed malaria.

The construction of the Panama Canal was made possible only after yellow fever and malaria were controlled in the area. These two diseases were a major cause of death and disease among workers in the area. In 1906, there were over 26,000 employees working on the Canal. Of these, over 21,000 were hospitalized for malaria at some time during their work. By 1912, there were over 50,000 employees, and the number of hospitalized workers had decreased to approximately 5,600. Through the leadership and efforts of William Crawford Gorgas, Joseph Augustin LePrince, and Samuel Taylor Darling, yellow fever was eliminated and malaria incidence markedly reduced through an integrated program of insect and malaria control.

Gorgas-William-Crawford, MD

Gorgas-William-Crawford, MD

During the U.S. military occupation of Cuba and the construction of the Panama Canal at the turn of the 20th century, U.S. officials made great strides in the control of malaria and yellow fever. In 1914 Henry Rose Carter and Rudolph H. von Ezdorf of the USPHS requested and received funds from the U.S. Congress to control malaria in the United States. Various activities to investigate and combat malaria in the United States followed from this initial request and reduced the number of malaria cases in the United States. USPHS established malaria control activities around military bases in the malarious regions of the southern United States to allow soldiers to train year round.

U.S. President Franklin D. Roosevelt signed a bill that created the Tennessee Valley Authority (TVA) on May 18, 1933. The law gave the federal government a centralized body to control the Tennessee River’s potential for hydroelectric power and improve the land and waterways for development of the region. An organized and effective malaria control program stemmed from this new authority in the Tennessee River valley. Malaria affected 30 percent of the population in the region when the TVA was incorporated in 1933. The Public Health Service played a vital role in the research and control operations and by 1947, the disease was essentially eliminated. Mosquito breeding sites were reduced by controlling water levels and insecticide applications.

Chloroquine was discovered by a German, Hans Andersag, in 1934 at Bayer I.G. Farbenindustrie A.G. laboratories in Eberfeld, Germany. He named his compound resochin. Through a series of lapses and confusion brought about during the war, chloroquine was finally recognized and established as an effective and safe antimalarial in 1946 by British and U.S. scientists.

Felix Hoffmann, Gerhard Domagk, Hermann Schnell_BAYER

Felix Hoffmann, Gerhard Domagk, Hermann Schnell_BAYER

A German chemistry student, Othmer Zeidler, synthesized DDT in 1874, for his thesis. The insecticidal property of DDT was not discovered until 1939 by Paul Müller in Switzerland. Various militaries in WWII utilized the new insecticide initially for control of louse-borne typhus. DDT was used for malaria control at the end of WWII after it had proven effective against malaria-carrying mosquitoes by British, Italian, and American scientists. Müller won the Nobel Prize for Medicine in 1948.

Paul Muller

Paul Muller

Malaria Control in War Areas (MCWA) was established to control malaria around military training bases in the southern United States and its territories, where malaria was still problematic. Many of the bases were established in areas where mosquitoes were abundant. MCWA aimed to prevent reintroduction of malaria into the civilian population by mosquitoes that would have fed on malaria-infected soldiers, in training or returning from endemic areas. During these activities, MCWA also trained state and local health department officials in malaria control techniques and strategies.

The National Malaria Eradication Program, a cooperative undertaking by state and local health agencies of 13 Southeastern states and the CDC, originally proposed by Louis Laval Williams, commenced operations on July 1, 1947. By the end of 1949, over 4,650,000 housespray applications had been made. In 1947, 15,000 malaria cases were reported. By 1950, only 2,000 cases were reported. By 1951, malaria was considered eliminated from the United States.

With the success of DDT, the advent of less toxic, more effective synthetic antimalarials, and the enthusiastic and urgent belief that time and money were of the essence, the World Health Organization (WHO) submitted at the World Health Assembly in 1955 an ambitious proposal for the eradication of malaria worldwide. Eradication efforts began and focused on house spraying with residual insecticides, antimalarial drug treatment, and surveillance, and would be carried out in 4 successive steps: preparation, attack, consolidation, and maintenance. Successes included elimination in nations with temperate climates and seasonal malaria transmission.

Some countries such as India and Sri Lanka had sharp reductions in the number of cases, followed by increases to substantial levels after efforts ceased, while other nations had negligible progress (such as Indonesia, Afghanistan, Haiti, and Nicaragua), and still others were excluded completely from the eradication campaign(sub-Saharan Africa). The emergence of drug resistance, widespread resistance to available insecticides, wars and massive population movements, difficulties in obtaining sustained funding from donor countries, and lack of community participation made the long-term maintenance of the effort untenable.

The goal of most current National Malaria Prevention and Control Programs and most malaria activities conducted in endemic countries is to reduce the number of malaria-related cases and deaths. To reduce malaria transmission to a level where it is no longer a public health problem is the goal of what is called malaria “control.”

The natural ecology of malaria involves malaria parasites infecting successively two types of hosts: humans and female Anopheles mosquitoes. In humans, the parasites grow and multiply first in the liver cells and then in the red cells of the blood. In the blood, successive broods of parasites grow inside the red cells and destroy them, releasing daughter parasites (“merozoites”) that continue the cycle by invading other red cells.

Anopheles mosquito

Anopheles mosquito

The blood stage parasites are those that cause the symptoms of malaria. When certain forms of blood stage parasites (“gametocytes”) are picked up by a female Anopheles mosquito during a blood meal, they start another, different cycle of growth and multiplication in the mosquito.

After 10-18 days, the parasites are found (as “sporozoites”) in the mosquito’s salivary glands. When the Anopheles mosquito takes a blood meal on another human, the sporozoites are injected with the mosquito’s saliva and start another human infection when they parasitize the liver cells.

Malaria. Wikipedia

Malaria. Wikipedia

A Plasmodium from the saliva of a female mosquito moving across a mosquito cell

Thus the mosquito carries the disease from one human to another (acting as a “vector”). Differently from the human host, the mosquito vector does not suffer from the presence of the parasites.

All the clinical symptoms associated with malaria are caused by the asexual erythrocytic or blood stage parasites. When the parasite develops in the erythrocyte, numerous known and unknown waste substances such as hemozoin pigment and other toxic factors accumulate in the infected red blood cell. These are dumped into the bloodstream when the infected cells lyse and release invasive merozoites. The hemozoin and other toxic factors such as glucose phosphate isomerase (GPI) stimulate macrophages and other cells to produce cytokines and other soluble factors which act to produce fever and rigors associated with malaria.

Ookinete,_sporozoite,_merozoite

Ookinete,_sporozoite,_merozoite

Plasmodium falciparum-infected erythrocytes, particularly those with mature trophozoites, adhere to the vascular endothelium of venular blood vessel walls and when they become sequestered in the vessels of the brain it is a factor in causing the severe disease syndrome known as cerebral malaria, which is associated with high mortality.

Following the infective bite by the Anopheles mosquito, a period of time (the “incubation period”) goes by before the first symptoms appear. The incubation period in most cases varies from 7 to 30 days. The shorter periods are observed most frequently with P. falciparum and the longer ones with P. malariae.

malaria_lifecycle.

malaria_lifecycle.

Antimalarial drugs taken for prophylaxis by travelers can delay the appearance of malaria symptoms by weeks or months, long after the traveler has left the malaria-endemic area. (This can happen particularly with P. vivax and P. ovale, both of which can produce dormant liver stage parasites; the liver stages may reactivate and cause disease months after the infective mosquito bite.)

The Influenza Pandemic of 1918

The Nation’s Health

If you had lived in the early twentieth century, your life expectancy would
have been much shorter than it is today. Today, life expectancy for men is 75 years;
for women, it is 80 years. In 1918, life expectancy for men was only 53 years.

Women’s life expectancy at 54 was only marginally better.

Why was life expectancy so much shorter?

During the early twentieth century, communicable diseases—that is diseases
which can spread from person to person—were widespread. Influenza and
pneumonia along with tuberculosis and gastrointestinal infections such
as diarrhea killed Americans at an alarming rate but
non-communicable diseases such as cancer and heart disease also
exacted a heavy toll. Accidents, especially in the nation’s unregulated factories
and workshops, were also responsible for maiming and killing many workers.

High infant mortality further shortened life expectancy. In 1918, one in
five American children did not live beyond their fifth birthday. In some
cities, the situation was even worse, with thirty percent of all infants dying
before their first birthday. Childhood diseases such as diphtheria, measles,
scarlet fever and whooping cough contributed significantly to these high
death rates.

osler_at_a_bedside

osler_at_a_bedside

By 1900, an increasing number of physicians were receiving clinical
training. This training provided doctors with new insights into disease
and specific types of diseases. [Credit: National Library of Medicine]

scarlet_fever

scarlet_fever

Quarantine signs such as this one warned visitors away from homes
with scarlet fever and other infectious diseases. [Credit: National
Library of Medicine]

Rat Proofing

Cities often sponsored Clean-Up Days. Here, Public Health Service
employees clean up San Francisco’s streets in a campaign to
eradicate bubonic plague. [Credit: Office of the Public Health
Service Historian]

cleanup days

cleanup days

A young woman is seated with a baby on her lap in the center
of the photo.  On the right are two young children.  One child is
standing.  The other is seated in a crib.  A woman in a long
white apron stands by the stove on the left side of the photo.
She is pulling a bottle out of a pan on the stove.

nurse_helps_with_baby_formula

nurse_helps_with_baby_formula

A public health nurse teaches a young mother how to sterilize
a bottle. [Credit: National Library of Medicine]

Seeking Medical Care

Feeling Sick in 1918?

If you became sick in nineteenth-century America, you might consult
a doctor, a druggist, a midwife, a folk healer, a nurse or even
your neighbor. Most of these practitioners would visit you in your home.

By 1918, these attitudes toward health care were beginning to
change. Some physicians had begun to set up offices where patients
could receive medical care and hospitals, which emphasized sterilization
and isolation, were also becoming popular.

However, these changes were not yet universal and many Americans
still lived their entire lives without visiting a doctor.

How Did Ordinary People View Disease?

Folk Medicine:

In 1918, folk healers could be found all over America. Some of these
healers believed that diseases had a physical cause such as cold
weather but others believed it had a supernatural cause such as a curse.

Treatments advocated by these healers ran the gamut. Herbal remedies
were especially popular. Other popular remedies included cupping,
which entailed attaching a heated cup to the surface of the skin,
and acupuncture. Many people also wore magical objects which they
believed protected the wearer from illness.

During the influenza pandemic of 1918 when scientific medicine
failed to provide Americans with a cure or preventative, many people
turned to folk remedies and treatments.

Scientific Medicine

In the 1880s, building on developments which had been in the
making since the 1830s, a growing number of scientists and
physicians came to believe that disease was spread by
minute pathogenic organisms or germs.

Often called the bacteriological revolution, this new theory
radically transformed the practice of medicine. But while this was a
major step forward in understanding disease, doctors and scientists
continued to have only a rudimentary understanding of the differences
between different types of microbes. Many practicing physicians
did not understand the differences between bacteria and viruses
and this sharply limited their ability to understand disease
causation and disease prevention.

Drugs and Druggists:

Although the early twentieth century witnessed growing attempts
to regulate the practice of medicine, many druggists assumed
duties we associate today with physicians. Some druggists, for
example, diagnosed and prescribed treatments which they
then sold to the patient. Some of these treatments included opiates;
few actually cured diseases.

Desperate times called for desperate remedies and during the
influenza pandemic, many patients turned to these and other drugs
in the hopes that they would provide a cure.

Nurses:

Between 1890 and 1920, nursing schools multiplied and trained
nurses began to replace practical nurses. Isolation practices
sterility, and strict routines, practices associated with professionally
trained nurses, increasingly became standard during this period. In 1918, nurses served as the physician’s hand, assisting doctors as
they made the rounds. During the pandemic, many nurses acted
independently of doctors, treating and prescribing for patients.

Physicians:

Throughout the eighteenth and much of the nineteenth centuries,
pretty much anyone had the right to call oneself a physician. By the
late nineteenth century, growing calls for reform had begun to
transform the profession.

In 1900, every state in the Union had some type of medical registration
law with about half of all states requiring physicians to possess a
medical diploma and pass an exam before they received a license
to practice. However, grandfather clauses which exempted many older
physicians meant that many physicians who practiced in 1918
had been poorly trained.

quack_doctor

quack_doctor

Poor training and loose regulations meant that some doctors were
little more than quacks. [Credit: National Library of Medicine]

drug_ad

drug_ad

Drug advertisers routinely promised quick and painless cures.
[Credit: National Library of Medicine]

While access to the profession was tightening, women and minorities,
including African-Americans, entered the profession in growing
numbers during the early twentieth century.

What Did Doctors Really Know?

Growing understanding of bacteriology enabled early twentieth-
century physicians to diagnose diseases more effectively than their
predecessors but diagnosis continued to be difficult. Influenza was
especially tricky to diagnose and many physicians may have incorrectly
diagnosed their patients, especially in the early stages of the pandemic.

Bacteriology did not revolutionize the treatment of disease. In the
pre-antibiotic era of 1918, physicians continued to rely heavily
on traditional therapeutics. During the pandemic, many physicians
used traditional treatments such as sweating which had their
roots in humoral medicine.

Reflecting the uneven structure of medical education, the level and
quality of care which physicians provided varied wildly.

The Public Health Service

Founded in 1798, the Marine Hospital Service originally provided
health care for sick and disabled seaman. By the late nineteenth
century, the growth of trade, travel and immigration networks
had led the Service to expand its mission to include protecting
the health of all Americans.

In a nation where federal and state authorities had consistently
battled for supremacy, the powers of the Public Health Service
were limited. Viewed with suspicion by many state and local
authorities, PHS officers often found themselves fighting state
and local authorities as well as epidemics—even when they had
been called in by these authorities.

chelsea marine hospital in 1918

chelsea marine hospital in 1918

A network of hospitals in the nation’s ports provided seamen with
access to healthcare. [Credit: Office of the Public Health Service Historian]

In 1918, there were fewer than 700 commissioned officers in the PHS.
Charged with the daunting task of protecting the health of some
106 million Americans, PHS officers were stationed in not only
the United States but also abroad.

Because few diseases could be cured, the prevention of disease
was central to the PHS mission. Under the leadership of Surgeon
General Rupert Blue, the PHS advocated the use of scientific
research, domestic and foreign quarantine, marine hospitals
and statistics to accomplish this mission. hen an epidemic emerged,
the Public Health Service’s epidemiologists tracked the disease,
house by house. The 1918 influenza pandemic occurred too
rapidly for the PHS to develop a detailed study of the pandemic.

typhoid_map

typhoid_map

This map was used to trace a smaller typhoid epidemic which erupted in
Washington, DC in 1906. [Credit: Office of the Public Health Service Historian]

The spread of disease within the US was a serious concern. However,
PHS officers were most concerned about the importation of disease into
the United States. To prevent this, ships could be, and often were,
quarantined by the PHS.

fever-quaranteen-station-1880

fever-quaranteen-station-1880

Travelers and immigrants to the United States were also required
to undergo a medical exam when entering the country. In 1918 alone,
700,000 immigrants underwent a medical exam at the hands of PHS
officers. Within the United States, PHS officers worked directly with
state and local departments of health to track, prevent and arrest
epidemics as they emerged. During 1918, PHS officers found themselves
battling not only influenza but also polio, typhus, typhoid, smallpox
and a range of other diseases. In 1918, the PHS operated research
laboratories stretching from Hamilton, Montana to Washington DC.
Scientific researchers at these laboratories ultimately discovered
both the causes and cures of diseases ranging from Rocky Mountain
Spotted Fever to pellagra.

Sewers and Sanitation:

In the nineteenth century, most physicians and public health experts
believed that disease was caused not by microorganisms but rather by dirt itself.

Sanitarians, as these people were called, argued that cleaning dirt-
infested cities and building better sewage systems would both prevent
and end many epidemics. At their urging, cities and towns across the United
States built better sewage systems and provided citizens with access to
clean water. By 1918, these improved water and sewage systems had greatly
contributed to a decline in gastrointestinal infections and a significant
reduction in mortality rates among infants, children and young adults.

But because diseases are caused by microorganisms, not dirt, these
tactics were not completely effective in ending all epidemics.

Sanitation: Controlling problems at source

Box 1: Sharing toilets in Uganda

A recent survey by the Ministry of Health in Uganda suggested that there is only one toilet for every 700 Ugandan pupils, compared to one for every 328 pupils in 1995. Out of 8000 schools surveyed, only 33% of the 8000 schools sampled have separate latrines for girls. The deterioration in sanitary conditions was attributed to increased enrolment in schools. UNICEF surveyed 90 primary schools in crisis-affected districts of north and west Uganda: only 2% had adequate latrine facilities (IRIN, 1999).

Box 2: Sanitation and diarrhoeal disease

Gwatkin and Guillot (1999) have claimed that diarrhoea accounts for 11% of all deaths in the poorest 20% of all countries. This toll could be reduced by key measures: better sanitation to reduce the cause of water linked diarrhoea; and more widespread use of oral rehydration therapy (ORT) to treat its effects. Improving water supplies, sanitation facilities and hygiene practices reduces diarrhoea incidence by 26%. Even more impressive, deaths due to diarrhoea are reduced by 65% with these same improvements (Esrey et al., 1991). Of the 2.2 million people that die from diarrhoea each year, many of those deaths are caused by one bacteria – Shigella. Simple hand washing with soap and water reduces Shigella and other diarrhoea transmission by 35% (Kotloff et al., 1999; Khan, 1982). ORT is effective in reducing deaths due to diarrhoea but does not prevent it.

http://www.who.int/water_sanitation_health/sanitproblems/en/index1.html

Garbage-A-polluted-creek

Garbage-A-polluted-creek

Influenza Strikes

Throughout history, influenza viruses have mutated and caused
pandemics or global epidemics. In 1890, an especially virulent influenza
pandemic struck, killing many Americans. Those who survived that
pandemic and lived to experience the 1918 pandemic tended to be
less susceptible to the disease.

From Kansas to Europe and back again, wave after wave, the
unfolding of the pandemic, mobilizing to fight influenza, the
pandemic hits, protecting yourself, communication, fading of
the pandemic.

Influenza ward

Influenza ward

When it came to treating influenza patients, doctors, nurses and
druggists were at a loss. [Credit: Office of the Public Health Service Historian]

The influenza pandemic of 1918-1919 killed more people than the
Great War, known today as World War I (WWI), at somewhere
between 20 and 40 million people. It has been cited as the most
devastating epidemic in recorded world history. More people died of
influenza in a single year than in four-years of the Black Death Bubonic
Plague from 1347 to 1351. Known as “Spanish Flu” or “La Grippe”
the influenza of 1918-1919 was a global disaster.

Grim Reaper

Grim Reaper

The Grim Reaper by Louis Raemaekers

In the fall of 1918 the Great War in Europe was winding down and
peace was on the horizon. The Americans had joined in the fight,
bringing the Allies closer to victory against the Germans. Deep within
the trenches these men lived through some of the most brutal conditions
of life, which it seemed could not be any worse. Then, in pockets
across the globe, something erupted that seemed as benign as the
common cold. The influenza of that season, however, was far more
than a cold. In the two years that this scourge ravaged the earth,
a fifth of the world’s population was infected. The flu was most deadly
for people ages 20 to 40. This pattern of morbidity was unusual for
influenza which is usually a killer of the elderly and young children.
It infected 28% of all Americans (Tice). An estimated 675,000
Americans died of influenza during the pandemic, ten times as
many as in the world war. Of the U.S. soldiers who died in Europe,
half of them fell to the influenza virus and not to the enemy (Deseret
News). An estimated 43,000 servicemen mobilized for WWI died
of influenza (Crosby). 1918 would go down as unforgettable year
of suffering and death and yet of peace. As noted in the Journal
of the American Medical Association final edition of 1918:   “The 1918
has gone: a year momentous as the termination of the most cruel war
in the annals of the human race; a year which marked, the end at
least for a time, of man’s destruction of man; unfortunately a year in
which developed a most fatal infectious disease causing the death
of hundreds of thousands of human beings. Medical science for
four and one-half years devoted itself to putting men on the firing
line and keeping them there. Now it must turn with its whole might to
combating the greatest enemy of all–infectious disease,” (12/28/1918).

From Kansas to Europe and Back Again:

scourge ravaged the earth

scourge ravaged the earth

Where did the 1918 influenza come from? And why was it so lethal?

In 1918, the Public Health Service had just begun to require state
and local health departments to provide them with reports about
diseases in their communities. The problem? Influenza wasn’t
a reportable disease.

But in early March of 1918, officials in Haskell County in Kansas
sent a worrisome report to the Public Health Service.Although
these officials knew that influenza was not a reportable disease,
they wanted the federal government to know that “18 cases
of influenza of a severe type” had been reported there.

By May, reports of severe influenza trickled in from Europe. Young
soldiers, men in the prime of life, were becoming ill in large
numbers. Most of these men recovered quickly but some developed
a secondary pneumonia of “a most virulent and deadly type.”

Within two months, influenza had spread from the military to the
civilian population in Europe. From there, the disease spread outward—to Asia, Africa, South America and, back again, to North America.

Wave After Wave:

In late August, the influenza virus probably mutated again and
epidemics now erupted in three port cities: Freetown, Sierra
Leone; Brest, France, and Boston, Massachusetts. In Boston,
dockworkers at Commonwealth Pier reported sick in massive
numbers during the last week in August. Suffering from fevers
as high as 105 degrees, these workers had severe muscle and
joint pains. For most of these men, recovery quickly followed. But
5 to 10% of these patients developed severe and massive
pneumonia. Death often followed.

Public health experts had little time to register their shock at the
severity of this outbreak. Within days, the disease had spread
outward to the city of Boston itself. By mid-September, the epidemic
had spread even further with states as far away as California, North
Dakota, Florida and Texas reporting severe epidemics.

The Unfolding of the Pandemic:

The pandemic of 1918-1919 occurred in three waves. The first
wave had occurred when mild influenza erupted in the late
spring and summer of 1918. The second wave occurred with an
outbreak of severe influenza in the fall of 1918 and the final wave
occurred in the spring of 1919.

In its wake, the pandemic would leave about twenty million dead
across the world. In America alone, about 675,000 people in
a population of 105 million would die from the disease.

Find out what happened in your state during the Pandemic

Mobilizing to Fight Influenza:

Although taken unaware by the pandemic, federal, state and local
authorities quickly mobilized to fight the disease.

On September 27th, influenza became a reportable disease. However,
influenza had become so widespread by that time that most states
were unable to keep accurate records. Many simply failed to
report to the Public Health Service during the pandemic, leaving
epidemiologists to guess at the impact the disease may have
had in different areas.

World War I had left many communities with a shortage of trained
medical personnel. As influenza spread, local officials urgently
requested the Public Health Service to send nurses and doctors.
With less than 700 officers on duty, the Public Health Service was
unable to meet most of these requests. On the rare occasions when
the PHS was able to send physicians and nurses, they often became
ill en route. Those who did reach their destination safely often found
themselves both unprepared and unable to provide real assistance.

In October, Congress appropriated a million dollars for the Public
Health Service. The money enabled the PHS to recruit and pay
for additional doctors and nurses. The existing shortage of doctors
and nurses, caused by the war, made it difficult for the PHS to locate and hire qualified practitioners. The virulence of the disease also meant that many nurses and doctors contracted influenza
within days of being hired.

Confronted with a shortage of hospital beds, many local officials
ordered that community centers and local schools be transformed
into emergency hospitals. In some areas, the lack of doctors meant
that nursing and medical students were drafted to staff these
makeshift hospitals.

The Pandemic Hits:

Entire families became ill. In Philadelphia, a city especially hard hit,
so many children were orphaned that the Bureau of Child Hygiene
found itself overwhelmed and unable to care for them.

As the disease spread, schools and businesses emptied. Telegraph
and telephone services collapsed as operators took to their
beds. Garbage went uncollected as garbage men reported sick.
The mail piled up as postal carriers failed to come to work.

State and local departments of health also suffered from high
absentee rates. No one was left to record the pandemic’s spread
and the Public Health Service’s requests for information went
unanswered.

As the bodies accumulated, funeral parlors ran out of caskets
and bodies went uncollected in morgues.

Protecting Yourself From Influenza:

In the absence of a sure cure, fighting influenza seemed an
impossible task.

In many communities, quarantines were imposed to prevent
the spread of the disease.Schools, theaters, saloons, pool
halls and even churches were all closed. As the bodies
mounted, even funerals were held out doors to protect mourners
against the spread of the disease.

Emergency Hospital for Influenza Patients

An Emergency Hospital for Influenza Patients

The effect of the influenza epidemic was so severe that the
average life span in the US was depressed by 10 years.
The influenza virus had a profound virulence, with a mortality
rate at 2.5% compared to the previous influenza epidemics, which
were less than 0.1%. The death rate for 15 to 34-year-olds of
influenza and pneumonia were 20 times higher in 1918 than in
previous years (Taubenberger). People were struck
with illness on the street and died rapid deaths.

One anecdote shared of 1918 was of four women playing bridge
together late into the night. Overnight, three of the women died
from influenza (Hoagg). Others told stories of people on their way
to work suddenly developing the flu and dying within hours
(Henig). One physician writes that patients with seemingly
ordinary influenza would rapidly “develop the most viscous
type of pneumonia that has ever been seen” and later when
cyanosis appeared in the patients, “it is simply a struggle for air
until they suffocate,” (Grist, 1979). Another physician recalls
that the influenza patients “died struggling to clear their airways
of a blood-tinged froth that sometimes gushed from their nose
and mouth,” (Starr, 1976). The physicians of the time were
helpless against this powerful agent of influenza. In 1918 children
would skip rope to the rhyme (Crawford):

I had a little bird,

Its name was Enza.

I opened the window,

And in-flu-enza.

schools inspected -

schools inspected –

The influenza pandemic circled the globe. Most of humanity felt the
effects of this strain of the influenza virus. It spread following
the path of its human carriers, along trade routes and shipping lines.
Outbreaks swept through North America, Europe, Asia, Africa, Brazil
and the South Pacific (Taubenberger). In India the mortality rate was
extremely high at around 50 deaths from influenza per 1,000
people (Brown). The Great War, with its mass movements of men
in armies and aboard ships, probably aided in its rapid diffusion
and attack. The origins of the deadly flu disease were unknown but
widely speculated upon. Some of the allies thought of the epidemic as a
biological warfare tool of the Germans. Many thought it was a result of
the trench warfare, the use of mustard gases and the generated “smoke
and fumes” of the war. A national campaign began using the ready
rhetoric of war to fight the new enemy of microscopic proportions. A
study attempted to reason why the disease had been so devastating
in certain localized regions, looking at the climate, the weather and
the racial composition of cities. They found humidity to be linked with
more severe epidemics as it “fosters the dissemination of the bacteria,”
(Committee on Atmosphere and Man, 1923). Meanwhile the new
sciences of the infectious agents and immunology were
racing to come up with a vaccine or therapy to stop the epidemics.

The experiences of people in military camps encountering the
influenza pandemic: An excerpt for the memoirs of a survivor at
Camp Funston of the pandemic Survivor A letter to a fellow physician
describing conditions during the influenza epidemic at Camp Devens.

A collection of letters of a soldier stationed in Camp Funston Soldier

The origins of this influenza variant is not precisely known. It is thought
to have originated in China in a rare genetic shift of the influenza virus.
The recombination of its surface proteins created a virus novel to
almost everyone and a loss of herd immunity. Recently the virus
has been reconstructed from the tissue of a dead soldier and is
now being genetically characterized.

The name of Spanish Flu came from the early affliction and large
mortalities in Spain (BMJ,10/19/1918) where it allegedly killed 8
million in May (BMJ, 7/13/1918). However, a first wave of influenza
appeared early in the spring of 1918 in Kansas and in military
camps throughout the US. Few noticed the epidemic in the midst of
the war. Wilson had just given his 14 point address. There was
virtually no response or acknowledgment to the epidemics in March
and April in the military camps. It was unfortunate that no steps were
taken to prepare for the usual recrudescence of the virulent influenza
strain in the winter. The lack of action was later criticized when the
epidemic could not be ignored in the winter of 1918 (BMJ, 1918).
These first epidemics at training camps were a sign of what was
coming in greater magnitude in the fall and winter of 1918 to the
entire world.

The war brought the virus back into the US for the second wave
of the epidemic. It first arrived in Boston in September of 1918
through the port busy with war shipments of machinery and supplies.
The war also enabled the virus to spread and diffuse. Men across
the nation were mobilizing to join the military and the cause. As they
came together, they brought the virus with them and to those they
contacted. The virus  killed almost 200,00 in October of 1918
alone. In November 11 of 1918 the end of the war enabled a resurgence.
As people celebrated Armistice Day with parades and large parties, a
complete disaster from the public health standpoint, a rebirth of
the epidemic occurred in some cities. The flu that winter was beyond
imagination as millions were infected and thousands died. Just as
the war had effected the course of influenza, influenza affected
the war. Entire fleets were ill with the disease and men on the front
were too sick to fight. The flu was devastating to both sides, killing
more men than their own weapons could.

With the military patients coming home from the war with battle wounds
and mustard gas burns, hospital facilities and staff were taxed
to the limit. This created a shortage of physicians, especially in the
civilian sector as many had been lost for service with the military.
Since the medical practitioners were away with the troops, only
the medical students were left to care for the sick. Third and forth
year classes were closed and the students assigned jobs as
interns or nurses (Starr,1976). One article noted that “depletion has
been carried to such an extent that the practitioners are brought
very near the breaking point,” (BMJ, 11/2/1918). The shortage was
further confounded by the added loss of physicians to the epidemic.
In the U.S., the Red Cross had to recruit more volunteers to contribute
to the new cause at home of fighting the influenza epidemic. To respond
with the fullest utilization of nurses, volunteers and medical supplies, the
Red Cross created a National Committee on Influenza. It was involved
in both military and civilian sectors to mobilize all forces to fight Spanish
influenza (Crosby, 1989). In some areas of the US, the nursing shortage
was so acute that the Red Cross had to ask local businesses to
allow workers to have the day off if they volunteer in the hospitals
at night (Deseret News). Emergency hospitals were created to
take in the patients from the US and those arriving sick from overseas.

chelsea marine hospital in 1918

chelsea marine hospital in 1918

red_cross_public_health_nurse

red_cross_public_health_nurse

The pandemic affected everyone. With one-quarter of the US and
one-fifth of the world infected with the influenza, it was  impossible
to escape from the illness. Even President Woodrow Wilson suffered
from the flu in early 1919 while negotiating the crucial treaty of
Versailles to end the World War (Tice). Those who were
lucky enough to avoid infection had to deal with the public health
ordinances to restrain the spread of the disease.

The public health departments distributed gauze masks to be worn
in public. Stores could not hold sales, funerals were limited
to 15 minutes. Some towns required a signed certificate to
enter and railroads would not accept passengers without
them. Those who ignored the flu ordinances had to pay steep
fines enforced by extra officers (Deseret News). Bodies pilled up
as the massive deaths of the epidemic ensued. Besides the
lack of health care workers and medical supplies, there was a shortage
of coffins, morticians and gravediggers (Knox). The conditions in 1918
were not so far removed from the Black Death in the era of the
bubonic plague of the Middle Ages.

iowa_flu

iowa_flu

In 1918-19 this deadly influenza pandemic erupted during the final
stages of World War I. Nations were already attempting to deal with
the  effects and costs of the war. Propaganda campaigns and war
restrictions and rations had been implemented by governments.
Nationalism pervaded as people accepted government authority.
This allowed the public health departments to easily step in and
implement their restrictive measures. The war also gave science
greater importance as governments relied on scientists, now armed
with the new germ theory and the development of antiseptic surgery,
to design vaccines and reduce mortalities of disease and battle
wounds. Their new technologies could preserve the men on
the front and ultimately save the world. These conditions
created by World War I, together with the current social attitudes
and ideas, led to the relatively calm response of the public and
application of scientific ideas. People allowed for strict measures
and loss of freedom during the war as they submitted to the
needs of the nation ahead of their personal needs. They had
accepted the limitations placed with rationing and drafting.
The responses of the public health officials reflected the new
allegiance to science and the wartime society. The medical
and scientific communities had developed new theories and
applied them to prevention, diagnostics and treatment of the
influenza patients.

The Medical and Scientific Conceptions of Influenza

Scientific ideas about influenza, the disease and its origins,
shaped the public health and medical responses. In 1918
infectious diseases were beginning to be unraveled. Pasteur
and Koch had solidified the germ theory of disease through
clear experiments clever science. The bacillus responsible
for many infections such as tuberculosis and anthrax  had
been visualized, isolated and identified. Koch’s postulates
had been developed to clearly link a disease to a specific
microbial agent.

Robert Koch

Robert Koch

The petri dish was widely used to grow sterile cultures of bacteria
and investigate bacterial flora. Vaccines had been created for
bacterial infections and even the unseen rabies virus by
serial passage techniques. The immune system was explained by
Paul Erhlich and his side-chain theory. Tests of antibodies such as
Wasserman and coagulation experiments were becoming commonplace.
Science and medicine were on their way to their complete entanglement
and fusion as scientific principles and methodologies made their way
into clinical practice, diagnostics and therapy.

The Clinical Descriptions of Influenza

Patients with the influenza disease of the epidemic were generally
characterized by common complaints associated with the flu. They had
body aches, muscle and joint pain, headache, a sore throat and a
unproductive cough with occasional harsh breathing (JAMA, 1/25/1919).

The most common sign of infection was the fever, which ranged from
100 to 104 F and lasted for a few days. The onset of the epidemic influenza
was peculiarly sudden, as people were struck down with dizziness, weakness
and pain while on duty or in the street (BMJ, 7/13/1918). After  the
disease was established the mucous membranes became reddened
with sneezing. In some cases there was a hemorrhage of the
mucous membranes of the nose and bloody noses were commonly
seen. Vomiting occurred on occasion, and also sometimes diarrhea
but more commonly there was constipation (JAMA, 10/3/1918).

The danger of an influenza infection was its tendency to progress into
the often fatal secondary bacterial infection of pneumonia. In the
patients that did not rapidly recover after three or four days of fever, there
is an “irregular pyrexia” due to bronchitis or broncopneumonia (BMJ,
7/13/1918). The pneumonia would often appear after a period of
normal temperature with a sharp spike and expectorant of bright
red blood. The lobes of the lung became speckled with “pneumonic
consolidations.” The fatal cases developed toxemia and vasomotor
depression (JAMA, 10/3/1918). It was this tendency for secondary
complications that made this influenza infection so deadly.

pneumonia

pneumonia

hospital ward in 1918

hospital ward in 1918

A military hospital ward in 1918

In the medical literature characterizing the influenza disease, new
diagnostic techniques are frequently used to describe the clinical
appearance. The most basic clinical guideline was the temperature,
a record of which was kept in a table over time. Also closely
monitored was the pulse rate. One clinical account said that
“the pulse was remarkably slow,” (JAMA, 4/12/1919) while others
noted that the pulse rate did not increase as expected. With the
pulse, the respiration rate was measured and reported to provide
clues of the clinical progression.
Patients were also occasionally “roentgenographed” or chest x-rayed,
(JAMA, 1/25/1919). The discussion of clinical influenza also often
included analysis of the blood. The number of white blood cells were
counted for many patients. Leukopenia was commonly associated
with influenza. The albumin was also measured, since it was noted that
transient albuminuria was frequent in influenza patients. This was
done by urine analysis. The Wassermann reaction was another
added new test of the blood for antibodies (JAMA, 10/3/1918).
These new measurements enabled to physicians to have an
image of action and knowledge using scientific instruments. They
could record precisely the progress of the influenza infection and perhaps
were able to forecast its outcome.

The most novel of these tests were the blood and sputum cultures.
Building on the germ theory of disease, the physicians and their
associated research scientists attempted to find the culprit for this
deadly infection. Physicians would commonly order both blood and sputum
cultures of their influenza and pneumonia patients mostly for research
and investigative purposes. At the military training camp
Camp Lewis during a influenza epidemic, “in all cases of pneumonia.
a sputum study, white blood and differential count, blood culture
and urine examinations were made as routine,” (JAMA, 1/25/1919).

The bacterial flora of the nasopharynx of some patients was also cultured
since droplet infection was where the disease disseminated. The
collected swabs and specimens were inoculated onto blood agar of
petri dishes. The grown up bacterial colonies were closely studied to
find the causal organism. Commonly found were pneumococcus,
streptococcus, staphylococcus and Bacillus influenzae (JAMA, 4/12/1919).

pneumonia

pneumonia

These new laboratory tests used in the clinical setting brought in a solid
scientific, biological link to the practice of medicine. Medicine had
become fully scientific and technologic in its understanding and
characterization of the influenza epidemic.

Treatment and Therapy

The therapeutic remedies for influenza patients varied from the
newly developed drugs to oils and herbs. The therapy was much less
scientific than the diagnostics, as the drugs had no clear explanatory
theory of action. The treatment was largely symptomatic, aiming to
reduce fever or pain. Aspirin, or acetylsalicylic acid was a common remedy.
For secondary pneumonia doses of epinephrin were given. To
combat the cyanosis physicians gave oxygen by mask or some
injected it under the skin (JAMA, 10/3/1918). Others used salicin which
reduced pain, discomfort and fever and claimed to reduce the infectivity
of the patient. Another popular remedy was cinnamon in powder or oil form
with milk to reduce temperature (BMJ, 10/19/1918). Finally, salt of quinine
was suggested as a treatment. Most physicians agreed that the patient should
be  kept in bed (BMJ, 7/13/1918). With that was the advice of plenty of
fluids and nourishment. The application of cold to the head, with
warm packs or warm drinks was also advised. Warm baths were used
as a hydrotherapeutic method in hospitals but were discarded for
lack of success (JAMA, 10/3/1918). These treatments, like the
suggested prophylactic measures of the public health officials, seemed to
originate in the common social practices and not in the growing field of
scientific medicine. It seems that as science was entering the medical
field, it served only for explanatory, diagnostic and preventative
measures such as vaccines and technical tests. This science had
little use once a person was ill.

However, a few proposed treatment did incorporate scientific ideas
of germ theory and the immune system. O’Malley and Hartman
suggested to treat influenza patients with the serum of convalescent
patients. They utilize the theorized antibodies to boost the immune
system of sick patients. Other treatments were “digitalis,” the
administration of isotonic glucose and sodium bicarbonate intravenously
which was done in military camps (JAMA, 1/4/1919). Ross and
Hund too utilized ideas about the immune system and properties of the
blood to neutralize toxins and circulate white blood cells. They believed
that the best treatment for influenza should aim to: “…neutralize or render
the intoxicant inert…and prevent the blood destruction with its destructive
leukopenia and lessened coagulability,” (JAMA, 3/1/1919). They tried
to create a therapeutic immune serum to fight infection. These therapies
built on current scientific ideas and represented the highest
biomedical, technological treatment like the antitoxin to diphtheria.

influenza

influenza

In July, an American soldier said that while influenza caused a heavy
fever, it “usually only confines the patient to bed for a few days.” The
mutation of the virus changed all that. [Credit: National Library of Medicine]

recovering_from_influenza

recovering_from_influenza

An old cliché maintained that influenza was a wonderful disease as
it killed no one but provided doctors with lots of patients. The 1918
pandemic turned this saying on its head. [Credit: The Etiology of
Influenza in 1918]

During the 1890 influenza epidemic, Pfeiffer found what he
determined to be the microbial agent to cause influenza.
In the sputum and respiratory tract of influenza patients in 1892,
he isolated the bacteria Bacillus influenzae , which was
accepted as the true “virus” though it was not found in localized
outbreaks (BMJ, 11/2/1918). However, in studies of the 1907-8
epidemic in the US, Lord had found the bacillus in only 3 of 20 cases.
He also found the bacillus in 30% of cultures of sputum from TB patients.
Rosenthal further refuted the finding when he found the bacillus in 1 of 6
healthy people in 1900 (JAMA, 1/18/1919). The bacillus was also
found to be present in all cases of whooping cough and many cases
of measles, chronic bronchitis and scarlet fever (JAMA, 10/5/1918).
The influenza pandemic provided scientists the opportunity to confirm
or refute this contested microbe as the cause of influenza. The sputum
studies from the Camp Lewis epidemic found only a few influenza cases
harvesting the influenza bacilli and mostly type IV pneumococcus . They
concluded that “the recent epidemic at Camp Lewis was an acute
respiratory infection and not an epidemic due to Bacillus influenzae ,”
(JAMA, 1/25/1919). This finding along with others suggested to most
scientists that the Pfeiffer’s Bacillus was not the cause of influenza.

In the 1918-19 influenza pandemic, there was a great drive to find the
etiological agent responsible for the deadly scourge. Scientists in their
labs were working hard, using the cultures obtained from physician clinics,
to isolate the etiological agent for influenza. As a report early in the
epidemic said, “the ‘influence’ of influenza is still veiled in mystery, ”
(JAMA, 10/5/1918). The nominated bacillus influenzae bacteria
seemed to be incorrect and scientists scrambled to isolate the true cause.
In the journals, many authors speculated on the type of agent- was
it a new microbe, was it a bacteria, was it a virus? One journal offered
that “the severity of the present pandemic, the suddenness of onset…
led to the suggestion that the disease cannot be influenza but some other
and more lethal infection,” (BMJ, 11/2/1918). However, most accepted that
the epidemic disease was influenza based on the familiar symptoms
and known pattern of disease. The respiratory disease of influenza was
understood to give warning in the late spring of its potential effects
upon its recrudescence once the weather turned cold in the winter
(BMJ, 10/19/1918).One article with foresight stated that ” there can
be no question that the virus of influenza is a living organism…

flu virus EM

flu virus EM

it is possibly beyond the range of microscopic vision,” (BMJ, 11/16/1918). Another
article confirmed the idea of an “undiscovered virus” and noted that pneumococci
and streptococci were responsible for “the gravity of the secondary pulmonary
complications,” (BMJ, 11/2/1918). The article went on to offer the idea of a
symbiosis of virus and secondary bacterial infection combining to make it
such a severe disease.

The investigators as they attempted to find the responsible agent for the influenza
pandemic were developing ideas of infectious microbes and the concept of the
virus. The idea of the virus as an infectious agent had been around for years.
The articles of the period refer to the “virus” in their discussion but do not
consistently use it to be an infectious microbe, distinctive from bacteria. The
term virus has the same usage and application as bacillus. In 1918, a virus
was defined scientifically to be a submicroscopic infectious entity which could
be filtered but not grown in vitro . In the 1880s Pasteur developed an attenuated
vaccine for the rabies virus by serial passage way ahead of his time. Ivanoski’s
work on the tobacco mosaic virus in 1890s lead to the discovery of the virus.
He found an infectious agent that acted as a micro-organism as it multiplied
yet which passed through the sterilizing filter as a nonmicrobe. By the 1910s
several viruses, defined as filterable infectious microbes, had been identified
as causing infectious disease (Hughes). However, the scientists were still
conceptually behind in defining a virus; they distinguished it only by size
from a bacteria and not as an obligate parasite with a distinct life cycle
dependent on infecting a host cell.

The influenza epidemic afforded the opportunity to research the etiological
agent and develop the idea of the virus. Experiments by Nicolle and Le Bailly in
Paris were the earliest suggestions that influenza was caused by a “filter-passing
virus,” (BMJ, 11/2/1918). They filtered out the bacteria from bronchial expectoration
of an influenza patient and injected the filtrate into the eyes and nose of two monkeys.
The monkeys developed a fever and a marked depression. The filtration was later
administered to a volunteer subcutaneously who developed typical signs of influenza.
They reasoned that the inoculated person developed influenza from the filtrate since
no one else in their quarters developed influenza (JAMA, 12/28/1918). These scientists
followed Koch’s postulates as they isolated the causal agent from patients with the
illness and used it to reproduce the same illness in animals. Through these studies,
the scientists proved that influenza was due to a submicroscopic infectious agent
and not a bacteria, refuting the claims of Pfeiffer and advancing virology. They were
on their way to discerning the virus and characterizing the orthomyxo viruses that
lead to the disease of influenza.

These scientific experiments which unravel the cause of influenza, had immediate
preventative applications. They would assist in the effort to create a effective
vaccine to prevent influenza. This was the ultimate goal of most studies, since
vaccines were thought to be the best preventative solution in the early 20th century.
Several experiments attempted to produce vaccines, each with a different
understanding of the etiology of fatal influenza infection. A Dr. Rosenow invented
a vaccine to target the multiple bacterial agents involved from the serum of patients.
He aimed to raise the immunity to against the bacteria, the “common causes of death,
“and not the cause of the initial symptoms by inoculating with the proportions found
in the lungs and sputum (JAMA, 1/4/1919). The vaccines made for the British forces
took a similar approach and were “mixed vaccines” of pneumococcus and
lethal streptococcus. The vaccine development therefore focused on the culture
results of what could be isolated from the sickest patients and lagged behind the
scientific progress.

Fading of the Pandemic:

In November, two months after the pandemic had erupted, the Public Health Service
began reporting that influenza cases were declining.

Communities slowly lifted their quarantines. Masks were discarded. Schools were
re-opened and citizens flocked to celebrate the end of World War I.

Communities and the disease continued to be a threat throughout the spring of 1919.

By the time the pandemic had ended, in the summer of 1919, nearly 675,000
Americans were dead from influenza. Hundred of thousands more were orphaned
and widowed.

The Legacy of the Pandemic

No one knows exactly how many people died during the 1918-1919 influenza
pandemic. During the 1920s, researchers estimated that 21.5 million people died
as a result of the 1918-1919 pandemic. More recent estimates have estimated
global mortality from the 1918-1919 pandemic at anywhere between 30 and 50
million. An estimated 675,000 Americans were among the dead.

Twentieth-Century Influenza Pandemics or Global Epidemics:

The pandemic which occurred in 1918-1919 was not the only influenza pandemic
of the twentieth century. Influenza returned in a pandemic form in 1957-1958
and, again, in 1968-1969. These two later pandemics were much less severe than the 1918-1919 pandemic.
Estimated deaths within the United States for these two later pandemics were 70,000 excess deaths (1957-1958) and 33,000 excess deaths (1968-1967).

Research, forgetting the pandemic of 1918-1919, scientific milestones, 20th century influenza or global pandemics.
The Influenza Pandemic occurred in three waves in the United States throughout
1918 and 1919.

More Americans died from influenza than died in World War I. [Credit: National Library of Medicine]

All of these deaths caused a severe disruption in the economy. Claims against life
insurance policies skyrocketed, with one insurance company reporting a 745 percent
rise in the number of claims made. Small businesses, many of which had been unable to operate during the pandemic, went bankrupt.

Joseph goldberger

Joseph goldberger

Joseph Goldberger, one of the leading researchers in the PHS, studied influenza
during the pandemic. But Goldberger had multiple interests and influenza research
became less important to him in the years following 1918. [Credit: Office of the Public
Health Service Historian]

In the summer and fall of 1919, Americans called for the government to research
both the causes and impact of the pandemic. In response, both the federal government
and private companies, such as Metropolitan Life Insurance, dedicated money
specifically for flu research.

In an attempt to determine the effect influenza had different communities, the Public
Health Service conducted several small epidemiological studies. These studies,
however, were conducted after the pandemic and most PHS officers
admitted that the data which was collected was probably inaccurate.

PHS scientists continued to search for the causative agent of influenza in their
laboratories as did their fellow scientists in and outside the United States.

But while there was a burst of enthusiasm for funding flu research in
1918- 1919, the funds allocated for this research were actually fairly meager.
As time passed, Americans became less interested in the pandemic and its
causes. And even when funding for medical research dramatically increased
after World War II, funding for research on the 1918-1919 pandemic remained
limited.

Forgetting the 1918-1919 Pandemic:

In the years following 1919, Americans seemed eager to forget the pandemic.
Given the devastating impact of the pandemic, the reasons for this forgetfulness
are puzzling.

It is possible, however, that the pandemic’s close association with World War I
may have caused this amnesia. While more people died from the pandemic than
from World War I, the war had lasted longer than the pandemic and caused
greater and more immediate changes in American society.

Influenza also hit communities quickly. Often it disappeared within a few weeks of
its arrival. As one historian put it, “the disease moved too fast, arrived, flourished
and was gone before…many people had time to fully realize just how great
was the danger.” Small wonder, then, that many Americans forgot about the
pandemic in the years which followed.

Scientific Milestones in Understanding and Preventing Influenza:

In the early stages of the pandemic, many scientists believed that the agent
responsible for influenza was Pfeiffer’s bacillus. Autopsies and research conducted
during the pandemic ultimately led many scientists to discard this theory.

In late October of 1918, some researchers began to argue that influenza was
caused by a virus. Although scientists had understood that viruses could cause
diseases for more than two decades, virology was still very much in its infancy at
this time.

It was not until 1933 that the influenza A virus, which causes almost every type
of endemic and pandemic influenza, was isolated. Seven years later, in 1940,
the influenza B virus was isolated. The influenza C virus was finally isolated in 1950.

Influenza vaccine was first introduced as a licensed product in the United States in
1944. Because of the rapid rate of mutation of the influenza virus, the
effectiveness of a given vaccine usually lasts for only a year or two.

By the 1950s, vaccine makers were able to prepare and routinely release vaccines
which could be used in the prevention or control of future pandemics. During the
1960s, increased understanding of the virus enabled scientists to develop both
more potent and purer vaccines.

Mass production of influenza vaccines continued, however, to require several
months lead time.

Twentieth-Century Influenza Pandemics or Global Epidemics:

The pandemic which occurred in 1918-1919 was not the only influenza pandemic
of the twentieth century. Influenza returned in a pandemic form in 1957-1958
and, again, in 1968-1969.

These two later pandemics were much less severe than the 1918-1919 pandemic.
Estimated deaths within the United States for these two later pandemics
were 70,000 excess deaths (1957-1958) and 33,000 excess deaths (1968-1967).

Tuberculosis

Mycobacterium tuberculosis was first discovered in 1882 by Robert Koch and is one of almost 200 mycobacterial species which have been detected by molecular techniques. The genus Actinobacteria (given its own family, the Mycobacteriaceae) includes pathogens known to cause serious diseases in mammals, including tuberculosis (MTBC) and leprosy (M. leprae). Mycobacteria are grouped neither as Gram-positive nor Gram-negative bacteria. MTBC consists of M. tuberculosis, M. bovis, M. bovis BCG (bacillus Calmette-Guérin), M. africanum M. caprae, M. microti, M. canettii and M. pinnipedii, all of which share genetic homology, with no significant variation between sequences (∼0.01 to 0.03%), although differences in phenotypes are present. Cells in the genus have a typical rod, or slightly curved-shape, with dimensions of 0.2 to 0.6 μm by 1 to 10 μm.

Mycobacterium tuberculosis has a waxy mycolic acid lipid complex coating on its cell surface. The cells are impervious to Gram staining, so a common staining procedure used is Ziehl-Neelsen (ZN) staining. The outer compartment of the cell wall contains lipid-linked polysaccharides, is water-soluble, and interacts with the immune system. The inner wall is impermeable. Mycobacteria have some unique qualities that are divergent from members of the Gram-positive group, such as the presence of mycolic acids in the cell wall.

MTBC and M. leprae replication occurs in the tissues of warm-blooded human hosts. This air-borne pathogen is transmitted from an active pulmonary tuberculosis patient by coughing. Droplet nuclei, approximately 1 to 5 μm in size “meander” in the air and are transmitted to susceptible individuals by inhalation. Mycobacteria are incapable of replicating in or on inanimate objects. The risk of infection is dependent to the load of the bacillus that has been inhaled, level of infectiousness, contact perimeter and the immune competency of potential hosts. Due to the size of the droplets inhaled into the lungs, the infection penetrates the defense systems of the bronchi and enters the terminal alveoli. Invading bacteria are then engulfed by alveolar macrophage and dendritic cells.

The cell-mediated immune response alleviates the multiplication of M. tuberculosis and halts infection. Infected individuals with strong immune systems are generally able to combat the infection within 2 to 8 weeks post-infection, when the active cell-mediated immune response stops further multiplication of M. tuberculosis. Tuberculosis infection shows several significant clinical manifestations in pulmonary and extra-pulmonary sites. Prolonged coughing, severe weigh-lost, night sweats, low-grade fever, dyspnoea and chest pain are clinical symptoms indicated from pulmonary infections.

Fort Bayard, N.M., T.B. service assignment

Fort Gayard, NM

Fort Gayard, NM

Fort Bayard, NM Post Hospital circa 1890

U.S. Army, General Hospital, Fort Bayard, New Mexico, General View,

U.S. Army, General Hospital, Fort Bayard, New Mexico, General View,

Tuberculosis, (Pvt.) Richard Johnson said, was “regarded as a much dreaded disease that was easily contracted by association.” In fact, so many hospital corpsmen requested transfers out that the Surgeon General established a policy that no such requests would be considered until after two years of service. Consequently, Johnson noted, “During my time there we had a high percentage of desertions.” For example, all four of the men who arrived with Johnson, within a year—“two of them,” he dryly observed, “owing me money.”

Four years later another young man arrived at Fort Bayard. He, too, remarked on the long journey by rail through the “desert waste of New Mexico,” and then the wagon ride over “dry desolate foothills,” to the post. But his reaction was different from Johnson’s. Capt. Earl Bruns moved from being a patient to a physician at the hospital. For Bruns Fort Bayard was “a veritable oasis in the desert, studded with shade trees, green lawns, shrubbery, and flowers.” He credited the hospital commander, Colonel (Col.) George E. Bushnell, writing that, “[i]n this one spot one man had made the desert bloom like a rose.”

Johnson’s and Bruns’ different views from 1904 and 1908, respectively, may reflect the fact that Johnson was healthy and assigned grudgingly to work at the tuberculosis hospital, whereas Bruns had few other options and came in hopes of regaining his health—or it may reflect the improvements Bushnell made during his first years in command. But every week for the more than twenty years that Fort Bayard was an Army tuberculosis hospital, workers and patients arrived with dread and foreboding, or joy and relief—or a mix of them all.

The approach Fort Bayard and George Bushnell took to tuberculosis was similar to how physicians manage the disease today in that it involved isolating the patient, treating the disease, and educating the patient and his family on how to maintain their health. The hospital offered patients sanctuary from the demands, fears, and prejudices regarding tuberculosis in the outside world. Fort Bayard treated tuberculosis patients with prolonged bed rest, fresh air, and a healthy diet, but undertaking this “rest treatment”—confining oneself to bed for months—proved difficult if not impossible for many patients. Fort Bayard involved patients’ adaptation to new lifestyles as people with tuberculosis. Finally, Fort Bayard managed patients’ transition back to the outside world.

One of the most striking aspects of Fort Bayard was that many of the medical staff had tuberculosis themselves, including George Bushnell. Tuberculosis weakened Bushnell’s lungs and shaped his life in numerous ways. He tired easily, had to carefully monitor his health, and as Earl Bruns observed, “was never a well man.” Bushnell had active tuberculosis five times in his life: the fourth time in 1919 with a breakdown from the strain of wartime work; and the fifth and the final illness in 1924 that lead to his death at age 70. In 1911 he advised his superiors that, “I did not consider myself strong enough to carry on the work of commanding this Hospital and keeping myself in condition for active duty.” The War Department generally required officers in poor physical condition to retire, but the Surgeon General secured a waiver for Bushnell, because “the interests of the service would suffer by his retirement.” After a leave of absence in 1909–10, Bushnell’s annual reports on the competency of his officers included his own name on the list of those competent for hospital duty, but “unfit for active field service.”

“What would our sanatorium movement and our anti-tuberculosis crusade amount to,” wrote tuberculosis expert Adolphus Knopf, “were it not for the labors of tuberculous physicians, or one-time tuberculous physicians, who, because of their infirmity, had become interested in tuberculosis?” Well-known leaders in the antituberculosis movement such as Edward Trudeau and Lawrence Flick established their sanatoriums after they recovered from tuberculosis in order to offer others the treatment. Twenty-one of the first thirty recipients of the Trudeau Medal, established in 1926 for outstanding work in tuberculosis, had the disease. James Waring, a tuberculosis physician who arrived at a Colorado Springs sanatorium on a stretcher in 1908, later wrote, “It has been my good fortune to serve three separate and extended ‘hitches’ as a ‘bed patient,’ the time so spent numbering in all about nine years.” He, like many physicians, saw his personal experience as an asset in his practice. The three key figures in the Army tuberculosis program during World War I were Bushnell, Bruns, and Gerald Webb of Colorado Springs who started a tuberculosis sanatorium after his wife died of the disease.

Bushnell turned tuberculosis into an asset for the Army Medical Department, making Fort Bayard a center of national expertise on the disease. His personal experience with chronic pulmonary tuberculosis gave him good rapport and credibility with many of his patients. Medical officer Earl Bruns wrote that, “[H]e went among the patients and talked to them individually” and thereby provided “a living example of a cure due to rational treatment.” Bruns described how Bushnell spent his days attending to patients, carrying out administrative duties, and devoted hours to supervising the work in the gardens and grounds of Fort Bayard.

(Who’s Who in America, 1924-25. E. H. Bruns in American Review of Tuberculosis, June 1925. 0. B. Webb in Outdoor Life, Sept. 1924. Lancet. Lond., 1924. Jour. Am. Med. Ass’n., 1924, p. 374.)

General George M. Sternberg

In addition to being an Army surgeon, Sternberg was also a noted bacteriologist who, in 1880, had translated Antoine Magnin’s The Bacteria, which presented the latest research in germ theory. Sternberg’s work contributed to preparing American understanding of Robert Koch’s pronouncement in 1882 of the existence of the tubercle bacillus (Ott 1996:55). Over the next two decades Koch’s analysis gained converts, leading to the universally accepted belief that tuberculosis represented a bacterium infection that could be diagnosed and then monitored by microscopic inspection of patient’s sputum.

Sternberg was no doubt aware of the efforts of Edward Livingston Trudeau. Beginning in the 1870s, when he undertook his own recovery from consumption by withdrawing to the Adirondack Mountains, Trudeau had become an advocate of extended bed rest in remote, healthful environments. Quickly accepting Koch’s research, Trudeau argued that those afflicted by the tubercle bacillus could best be healed when removed from cities and placed under the care of physicians who carefully monitored their weight and sputum and who prescribed constant bed rest with exposure to fresh air. Preferring the term “sanatorium,” derived from the Latin word “to heal,” to “sanitarium,” derived from the Latin term for health, Trudeau founded his Adirondack Cottage Sanatorium at Saranac, New York, in 1885. This spawned the opening of hundreds of similar institutions throughout the country (Caldwell 1988:70).

In 1899, Fort Bayard remained within the Army under the auspices of the Army Medical Department. The Army’s decision to retain the fort, even after it had outlived its military usefulness, grew from the strong interest that General George M. Sternberg, Surgeon General of the Army, had in pulmonary tuberculosis and its treatment.
Sternberg was also aware of the relatively good health that the Army’s soldiers had enjoyed serving in the higher elevations of the American West. Members of Zebulon Pike’s expedition of 1810 and of Fremont’s exploratory parties of the 1840s had witness their health improve while in the Rocky Mountains.

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Upon assuming command in 1904, Bushnell, who had studied botany for years, immediately began to plant flowers, shrubs, and trees. When President Theodore Roosevelt created the Gila Forest Reserve in 1905, Bushnell ensured that Fort Bayard, which adjoined the Reserve, was part of a government reforestation project. The first year alone the Forest Service gave the hospital 250 seedlings of Himalayan cedar and yellow pine. Bushnell also got approval to fence in land for pasturing dairy cattle and arranged to recultivate long-neglected garden plots. The first year he predicted that the garden would generate “about 1300 dollars worth of produce.” After the quartermaster located an underground water source, Bushnell redoubled his cultivation efforts, planting trees, flowers, and grass to mitigate the wind and dust, and “to beautify the Post.” In later years Bushnell successfully grew beans from ancient cave dwellers (Anasazi beans), and made a less successful effort to grow Giant Sequoia from California.28 By 1910 Fort Bayard had four acres of vegetable gardens, a greenhouse, an orchard of 200 fruit trees, and alfalfa fields and hay fields for the dairy herd of 115 Holsteins, which the Silver City Enterprise proclaimed “one of the finest in the west.” The hospital also raised all of the beef consumed at the hospital (thereby avoiding Daniel Appel’s purchasing problems) and consumed pork at small expense by feeding the pigs the waste food. The hospital laboratory raised its own Belgian hares and guinea pigs for experiments.

Bushnell oversaw years of construction at Fort Bayard. In the wake of Florence Nightingale’s writings, nineteenth-century sanitation practices stressed cleanliness and ventilation, giving rise to pavilion style hospitals, narrow one- or two-story buildings lined with windows to provide patients with ample ventilation. In March 1904, Bushnell sent the Surgeon General plans for an “open court building” in modified pavilion style (Figure 2-1).

Plan for tuberculosis patient ward, as designed by George E. Bushnell, providing fresh air porches for each patient, United States Army Tuberculosis Hospital in New Mexico, .

Plan for tuberculosis patient ward, as designed by George E. Bushnell, providing fresh air porches for each patient, United States Army Tuberculosis Hospital in New Mexico, .

The building consisted of a quadrangle of long, narrow dressing rooms around an open court with porches along both the exterior and interior of the building. The rooms could be used for sleeping in inclement weather and the porches allowed patients to seek sun or shade as they wished. Wide doors enabled the easy movement of beds between the rooms and the porches. “The object of this style of building is to facilitate sleeping out of doors, which is now considered so important in modern sanatoria for the treatment of tuberculosis,” Bushnell explained.

The United States escaped the cauldron of WWI until April 1917. But after years of trying to maintain neutrality, President Woodrow Wilson’s administration mobilized the nation to fight in the most deadly enterprise the world had ever seen. Modern industrialized warfare would kill millions of soldiers, sailors, and civilians and unleash disease and famine across the globe. Typhus flourished in Eastern Europe and a lethal strain of influenza exploded out of the Western Front in 1918, producing one of the worst pandemics in history. Although eclipsed by such fierce epidemics, tuberculosis also fed on the war.

He was ordered to the office of The Surgeon General on June 2, 1917, and placed in charge of the Division of Internal Medicine and on June 13 there appeared S. G. O. Circular No. 20, Examinations for pulmonary tuberculosis in the military service, establishing a standard method of examination of the lungs for tuberculosis. Through his efforts a reexamination of all personnel already in the service was made by tuberculosis examiners and about 24,000 were rejected on that score. He had charge of the location, construction, and administration of all army tuberculosis hospitals, of which eight were built with a capacity of 8,000 patients.

With his relief from service in 1919 he took up his residence on a small farm at Bedford, Mass., where he prepared his Study of the Epidemiology of Tuberculosis (1920) and later Diseases of the Chest (1925) in collaboration with Dr. Joseph H. Pratt of Boston. As chief delegate of the National Tuberculosis Association he attended the first meeting of the International Union Against Tuberculosis in London in 1921. During the winter of 1922-23 he delivered a series of lectures on military medicine at Harvard University. In the summer of 1923 he moved to California and took up his residence at Pasadena.

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In eighteen months the Selective Service registered twenty-five million men for the draft, examined ten million for military service, and enlisted more than four million soldiers, sailors, and Marines. To the dismay of many people, medical screening boards across the nation soon discovered that American men were not as strong and healthy as they had assumed. Of those eligible for military service, 30 percent were physically unfit; a number of them deemed ineligible to serve had tuberculosis. Therefore, in 1917 Surgeon General William Gorgas called George Bushnell to Washington, DC, to establish the Office of Tuberculosis in the Division of Internal Medicine, leaving Bushnell’s protégé, Earl Bruns, in charge of Fort Bayard. Given the Medical Department’s mission to maintain a strong and healthy fighting force, Bushnell’s new job was to minimize the incidence of tuberculosis among active-duty soldiers and avoid the high cost of disability pensions for men who incurred the disease during military service. It was a tall order.

Wartime tuberculosis had already received attention in 1916, when reports circulated that the French army had sent home 86,000 men with the disease, raising the specter that life in the trenches would generate hundreds of thousands of cases. One investigator found that tuberculosis rates in the British army were double those in peacetime, reversing the prewar downward trend. The head of the New York City Public Health Department, Hermann Biggs, declared that “tuberculosis
offers a problem of stupendous magnitude in France.” Subsequent studies revealed that only 20 percent or less of the French soldiers sent home with tuberculosis actually had the disease; others were either misdiagnosed or had had tuberculosis prior to entering the military and therefore had not contracted it in the trenches. The reports nevertheless galvanized public health officials to address the tuberculosis problem. The Rockefeller Foundation, for example, in cooperation with the American Red Cross, established a Commission for the Prevention of Tuberculosis in France to help the French and protect any Americans from contracting tuberculosis “over there.”

Bushnell established four “tuberculosis screens” by (1) examining all volunteers and draftees before enlistment, (2) checking recruits again in the training camps, (3) examining soldiers already in the Army for tuberculosis, and (4) screening military personnel at discharge to ensure they returned to civil life in sound condition. To implement these activities, Bushnell developed a protocol under which physicians could quickly examine men for tuberculosis as part of the larger physical examination process. He standardized the procedures for examinations throughout the Army, and crafted a narrow definition of what constituted a tuberculosis diagnosis to enable the Army to enlist as many young men as possible. Despite these efforts, soldiers developed active cases of tuberculosis throughout the war. Bushnell’s office also created eight more tuberculosis hospitals in the United States and designated three hospitals with the American Expeditionary Forces (AEF) in France to care for soldiers who developed active tuberculosis in the camps and trenches. Short of resources and knowledge, however, the Army Medical Department at times struggled just to provide beds for tuberculosis patients, let alone deliver the individual care Bushnell and his staff had provided at Fort Bayard before the war.

Overburdened medical personnel worked long hours, in often poor conditions. Thousands of tuberculosis patients resented the diagnosis and protested the conditions in which at times they were virtually warehoused. The draft, which brought millions of young men into government control and responsibility, also exposed the Army Medical Department to public scrutiny. Congress launched an investigation in 1919. World War I, which so dramatically changed the world, profoundly altered the Army’s tuberculosis program as well. It also challenged George Bushnell’s expertise. The Army’s tuberculosis expert had founded his policies on assumptions that, although widely held at the time, proved to be inaccurate and costly in lives and treasure. Wartime tuberculosis, therefore, shows the power of disease to overwhelm both knowledge and institutions.

Bushnell and his contemporaries were familiar with the concept of immunity and the power of vaccination, and the Army Medical Department vaccinated soldiers for smallpox and typhoid. Extending this concept of immunity to tuberculosis, medical officers differentiated between primary infection in childhood and secondary infection later in life. Observing that tuberculosis was often fatal for infants and young children, they reasoned that for survivors, an early infection of tuberculosis bacilli immunized a person against the disease later in life.
A “primary infection,” wrote Bushnell, gave a person some immunity, which “while not sufficient in many cases to prevent extension of disease [within the body]…is sufficient to counteract new infections from without.”8 In an article on “The Tuberculous Soldier,” the revered physician William Osler agreed. For years autopsies had uncovered healed tuberculosis lesions in people who had died in accidents or of other diseases. Although it was not known how many men between the ages of eighteen and forty harbored the tubercle bacillus, Osler wrote, “We do know that it is exceptional not to find a few [lesions] in the bodies of men between these ages dead of other diseases.” Thus, he argued, “In a majority of cases the germ enlists with the soldier. A few, very few, catch the disease in infected billets or barracks.”9 Bushnell reasoned if adults developed tuberculosis, “they do it on account of failure of their resistance.”

At one point Bushnell told the chief surgeon of the AEF, “Personally I have no fear of the contagion of tuberculosis between adults and see no reason why patients of this kind should not be treated in the ordinary hospital.” He asserted that the “really cruel persecution of the consumptive…through the fear that he will infect others, is based on what I must characterize as highly exaggerated notions of the danger of such infection.” This, too, was the prevailing view. Boston bacteriologist Edward O. Otis, who served as a medical officer during the war, wrote that “Undue fear of the communicability of pulmonary tuberculosis from one adult to another is unwarranted in the present state of our knowledge.”
Bushnell reasoned that if men infected with tuberculosis could indeed easily spread it to others, there would be much more tuberculosis in the Army than there was. British physician Leslie Murry, reasoned that although the crowded and damp conditions of trench warfare would have unfavorable effects on soldiers’ health, living outside with plenty of fresh air and good food and hygienic practices would improve their resistance to tuberculosis. Public health specialist George Thomas Palmer countered that although reactivation may not be higher in the military than in civil life, the United States had enough men without tuberculosis to bar anyone suspected of it from the military and thereby avoid an “added financial burden to the nation.” The challenge was to keep tuberculosis out of the Army and tuberculars off the disability rolls, but not to exclude so many men as to impair the nation’s ability to amass an army.

Bushnell’s views of tuberculosis immunity, contagion, interaction with military life, and the risk of overdiagnosis shaped the Army Medical Department programs for screening recruits. He knew he could not guarantee that all tuberculosis could be eliminated from the Army, but asserted that, “a sufficiently rigid selection of promising material in itself practically excludes tuberculosis.” In addition to enlisting the strongest men, Bushnell believed that a massive screening program would pay for itself by eliminating those who would later cost the government in medical services and disability benefits.

But the nation at war did not have the time or resources for the meticulous one-hour examination practiced at Fort Bayard, so Bushnell developed a protocol for civilian and military physicians to examine volunteers, draftees, trainees, and soldiers for tuberculosis in a matter of minutes. Circular No. 20 detailed how physicians should examine recruits, and became the single most important Army tuberculosis document during the war. The circular explained that the apices, or the tops of lungs, were the most common location for tuberculosis lesions, and that “the only trustworthy sign of activity in apical tuberculosis is the presence of persistent moist rales.” Circular No. 20 directed that “the presence of tubercle bacilli in the sputum is a cause for rejection,” and that “no examination for tuberculosis is complete without auscultation following a cough.” It recommended that a sputum sample “be coughed up in [the examiner’s] presence,” to ensure that it was actually from the examinee.

The last one-third of the document detailed X-ray examinations, summarizing eight different kinds of conditions that may appear and that would be grounds for rejection, and which conditions would not. By 1915, a Fort Bayard medical officer stated that X-ray technology “has become one of the most valued procedures in the diagnosis of pulmonary tuberculosis.” Medical officers F. E. Diemer and R. D. MacRae at Camp Lewis, Washington, argued in the pages of the JAMA that X-rays should be the primary diagnostic tool, not an “adjunct.” World War I ultimately, however, did encourage X-ray technology by revealing its power to thousands of physicians, stimulating the search for technical advances, and demonstrating the importance of specialization in reading X-rays. By the end of the war, the Army Medical Department had shipped to France hundreds of X-ray machines for use in Army hospitals and at the bedside, and developed various modes of X-ray equipment, including X-ray ambulances

Calculating that it would require 600 examiners for the screening process, the Medical Department turned to training general practitioners from civil life who knew little about tuberculosis. Bushnell’s office established a six-week tuberculosis course to prepare physicians. The first course at the Army Medical School in Washington, DC, was so popular that instructors offered it at several other training camps in the country. General Hospital No. 16, operating in conjunction with Yale Medical School, also offered a course on hospital administration to train medical officers to run tuberculosis hospitals.

Public health officials and the National Tuberculosis Association asked to be informed of any tuberculous individuals being sent to their communities, including the name and address of the “party assuming responsibility for such continued treatment and care.” The journal American Medicine published an article by British tuberculosis specialist Halliday Sutherland, who expressed concern that if men declined treatment and returned home they could spread tuberculosis to their families. He suggested that the U.S. Army retain men diagnosed with tuberculosis so that the government could provide treatment and discipline them if they resisted. Members of Congress opposed simply discharging men with tuberculosis. Representative Carl Hayden of Arizona argued that such men had given up their civilian lives upon induction into the Army, only to discover “that they were afflicted with a dread disease which prevents them from earning a livelihood.” He suggested that “some provision should be made for the care of such men until they are able to provide for themselves.”

While Bushnell’s policies succeeded in suppressing tuberculosis rates in the Army, the narrow definition of a tuberculosis diagnosis explicitly allowed men with healed lesions in their lungs to serve, and the rapid screening system caused some examiners to miss cases of active disease. Bushnell recognized that “a standard, though imperfect, is believed to be an indispensable adjunct in Army tuberculosis work not only to support the examiner but also to secure the necessary uniformity of practice in the matter of discharge for tuberculosis.” Nationwide, local draft boards and training camps rejected more than 88,000 men for tuberculosis, about 2.3 percent of the 3.8 million men examined. Postwar assessments calculated that of the more than two million soldiers who went to France to serve in the AEF, only 8,717 were evacuated with a diagnosis of tuberculosis, an incidence of only 0.4 percent.

In early 1918 a strep infection in the training camps in the United States caused medical officers to send hundreds of trainees to Army hospitals misdiagnosed with tuberculosis, crowding hospitals and generating paperwork and confusion. For a time, therefore, the Office of The Surgeon General ordered that no one should be discharged for tuberculosis from the training camps unless he had bacilli in his sputum—meaning the very severe cases. More than 50 percent of the patients being sent back to the United States from France with a diagnosis of tuberculosis did not actually have the disease. Bushnell viewed such overdiagnoses as “evil,” because it took men out of the AEF and overburdened tuberculosis hospitals and naval transports, which had to segregate suspected tuberculosis cases in isolation rooms or on open decks.

Faced with what he called “leaking” of soldiers from the AEF due to erroneous tuberculosis diagnoses, Bushnell turned to a specialist for assistance, Gerald B. Webb (Figure 4-3), from Colorado Springs.61 An Englishman by birth, Webb had married an American, and when she developed tuberculosis the couple traveled to Colorado Springs, Colorado, for treatment. His wife struggled with the disease for ten years until her death in 1903, and afterward Webb stayed on in Colorado Springs, remarrying and building a medical practice specializing in tuberculosis. In addition to his medical practice, Webb pioneered research into the body’s immune function, searched for a tuberculosis vaccine, and was a founder of the American Association of Immunologists (1913). Still somewhat bored in Colorado Springs, Webb volunteered for the Medical Corps soon after the United States declared war and helped organize and run tuberculosis screening boards at Camp Russell, Wyoming, and Camp Bowie, Texas. Bushnell
appointed him senior tuberculosis consultant for the AEF. After meeting with Bushnell in Washington and attending the Army War Course for senior officers at Columbia University, Webb sailed to France in March 1918.

Gerald B. Webb, World War I, Gerald B. Webb Papers.

Gerald B. Webb, World War I,

Gerald B. Webb, World War I,

Photograph courtesy of Special Collections, Tutt Library, Colorado College, Colorado Springs, Colorado.

Immunity in tuberculosis: Further experiments Unknown Binding – 1914

Webb instituted a screening process similar to that in the United States, distributing Circular No. 20, and preparing an illustrated version for medical officers in the field. He established a policy directing that only patients with sputum positive for tuberculosis should be sent back to the United States. Others would be tagged “tuberculosis observation” and sent to one of three hospitals designated as tuberculosis observation centers. There, specialists—Bushnell’s “good tuberculosis men”—would distinguish tuberculosis signs from other lung problems such as bronchitis and pneumonia, determining that he was free of disease, and send only patients who were indeed positive for tuberculosis back to the homeland.

Webb traveled to field and base hospitals throughout France. He would typically spend three days at a hospital, examining patients, leading conferences, giving lectures, and, according to his biographer, Helen Clapesattle, “preaching his gospel of fresh air and absolute rest.” He recruited a radiologist to teach the proper reading of X-ray plates, and advocated the early detection of tuberculosis, explaining, “Just as the wounded do better if they are got to the surgeons quickly, so the tuberculosis-wounded are more likely to recover if they are spotted and sent to the doctors early.”

In the 1930s, as Webb had concluded in 1919, scientists came to recognize that early tuberculosis infections did not provide protection and that adults could be reinfected with tuberculosis and develop active disease. In the meantime, with his AEF work done, in January 1919 Webb returned to his family and medical practice in Colorado Springs. The National Tuberculosis Association recognized Webb’s war work by electing him president in 1920, and Webb set the Association on a course of tuberculosis research on the immunity question and the standardization of X-ray diagnostics. He did not return to military service, but was a mentor for young physicians Esmond Long and James Waring, who would be leaders in the Army Medical Department’s tuberculosis program during the next war.

May 1941, as the United States stood on the brink of another world war, Benjamin Goldberg, president of the American College of Chest Physicians, recited some stunning figures at the association’s annual meeting in Cleveland, Ohio. He calculated that from 1919 to 1940 the Veterans Administration had admitted 293,761 tuberculosis patients to its hospitals. These patients had received government care and benefits for a total of 1,085,245 patient-years, at a cost of $1,185,914,489.56. Goldberg’s remarks reveal that although tuberculosis rates in the United States were declining 3 to 4 percent annually during the interwar years, the government’s burden to care for tuberculosis patients remained heavy. The Army was only three-quarters the size it was before World War I (131,000 versus 175,000 strength) and experienced no major epidemics, so that suicide and automobile accidents became the leading causes of death in the peacetime Army. Although hospital admissions of active duty personnel for tuberculosis declined during the decade, tuberculosis admissions at Fitzsimons Hospital in Denver remained constant due to a steady stream of patients who were veterans of the war. Tuberculosis, in fact, became a leading cause of disability discharges from the Army and, with nervous and mental disorders, generated the greatest amount of veterans’ benefits between the wars,

The story of tuberculosis in the Army after World War I, then, is one of increasing demand and decreasing resources, a dynamic that left Fitzsimons financially strapped even before the country entered the Great Depression. An examination of Fitzsimons’ postwar environment—the modern hospital and technology, the ever-changing landscape of veterans’ benefits, and new, invasive treatments for tuberculosis—illuminates these stresses.

President Franklin Delano Roosevelt proclaimed a “limited national emergency” on 8 September 1939, a week after Germany invaded Poland. But due to underfunding during the interwar period, one observer wrote that, “to prepare for war the Medical Department had to start almost from scratch.”1 Given the lean years of the 1920s and 1930s and the Army Medical Department’s policy of discharging officers with tuberculosis from duty, Surgeon General James C. Magee had to turn to the civilian sector for a tuberculosis expert. He recruited Esmond R. Long, M.D., Ph.D., director of the Henry Phipps Institute for the Study, Prevention and Treatment of Tuberculosis in Philadelphia. He could not have made a better choice. Long was also professor of pathology at the University of Pennsylvania, director of medical research for the National Tuberculosis Association, and the youngest person to be awarded the Trudeau Medal at age forty-two years (in 1932) for his tuberculosis research.2 He would now become the Army’s point man on the disease and stand at the front lines of the Medical Department’s struggle with tuberculosis beginning before Pearl Harbor to well after V-J (Victory-Japan) Day.

His mission to reduce the effect of tuberculosis on the Army differed from that of Colonel (Col.) George Bushnell in the previous war because disease was less of a threat. In fact, World War II would be the first war in which more American personnel died of battle wounds than of disease. Of 405,399 recorded fatalities, battle deaths outnumbered those from disease and nonbattle injuries more than two to one: 291,557 to 113,842.3 Malaria, sexually transmitted diseases, and respiratory infections did sicken millions of soldiers, sailors, Marines, and airmen, but most survived. Thanks in part to sulfa drugs and, beginning in 1943, penicillin to treat bacterial infections, the Army Medical Department had only 14,904 deaths of 14,998,369 disease admissions worldwide, a 0.1 percent death rate.4 Tuberculosis declined, too, representing only 1 percent of Army hospital admissions for diseases—1.2 per 1,000 cases per year—a rate much lower than the 12 per 1,000 cases per year during World War I. The Medical Department concluded that “tuberculosis was not a major cause of non-effectiveness during the war.”

But Sir Arthur S. McNalty, chief medical officer of the British Ministry of Health (1935–40), called tuberculosis “one of the camp followers of war.” War abetted tuberculosis, he explained, because of the “lowering of bodily resistance and increased physical or mental strain or both.”6 It also found fertile ground in crowded barracks and camps, and ran rampant in the World War II prison camps and Nazi concentration camps. And just one active case of tuberculosis per thousand in the Army meant thousands of tuberculosis sufferers among the 11 million Americans in uniform, each of whom consumed Medical Department resources: the average hospital stay per case during the war was 113 days.7

But if tuberculosis was a camp follower, Esmond Long (Figure 8-1) was a tuberculosis follower.8 He tracked it down, studied it, and tried to prevent its spread at every stage of American involvement in the war. With war looming in 1940, the National Research Council asked Long to chair the Division of Medical Sciences, Subcommittee for Tuberculosis, to advise the government on preventing and controlling tuberculosis in both civilian and military populations during war mobilization. Once the United States entered the war, Long received a commission as a colonel in the Medical Corps and moved his family from Philadelphia to Washington, DC. Working out of the Office of The Surgeon General, Long set up a screening process with the Selective Service to keep tuberculosis out of the Army and then traveled to more than ninety induction camps to ensure adherence to the procedures. He also oversaw the expansion of tuberculosis treatment facilities in the United States, inspected Fitzsimons and other Army tuberculosis hospitals, advised medical officers on treating patients, kept abreast of research developments in the labs, monitored outbreaks of tuberculosis in the theaters of war, and wrote articles for medical and lay periodicals to publicize the Army’s antituberculosis program.

In 1945 Long traveled to the European theater to inspect hospitals caring for tubercular refugees and liberated prisoners of war (POWs). There he saw the horrors of the concentration camps at Buchenwald and Dachau where Army medical personnel cared for thousands of former prisoners sick and dying of typhus, starvation, and tuberculosis. After the war Long organized the tuberculosis control program for the Allied occupation of Germany, and returned annually in the 1950s to assess its progress. He split his time between the Army Medical Department and the Veterans Administration (VA) to supervise the transition of the federal tuberculosis treatment program from the War Department to the VA. He also helped organize and evaluate the antibiotic trials, which ultimately led to an effective cure for tuberculosis. After returning to civilian life Long continued to study tuberculosis in the Army, and he wrote the key tuberculosis chapters for the Army Medical Department’s official history of the war.

With Long as a guide, this chapter shows how war once again served as handmaiden to disease around the globe. This time the Army Medical Department assumed not only national but international responsibilities for the control of tuberculosis in military and civilian populations, among friend and foe. Long and the Army Medical Department did succeed in demoting tuberculosis from the leading cause of disability discharge for American World War I personnel (13.5 percent of discharges), to thirteenth position during the years 1942–45 (1.9 percent of all discharges), behind conditions such as psychoneuroses, ulcers, respiratory diseases, arthritis, and other diseases.9 But this achievement required continued vigilance, an Army-wide surveillance program, and dedicated personnel and resources. The first step was to keep tuberculosis out of the Army.

After war broke out in Europe, Congress passed the National Defense Act of 1940, which established the first peacetime military draft in U.S. history, increasing Army strength eightfold from 210,000 in September 1939 to almost 1.7 million (1,686,403) by December 1941. This resulted in a 75 percent rise in the number of patients in military hospitals, straining the Medical Department, which had only seven general hospitals and 119 station hospitals in 1939.

Esmond R. Long, who directed the Army tuberculosis program during World War II.

Esmond R. Long, who directed the Army tuberculosis program during World War II.

Figure.. Esmond R. Long, who directed the Army tuberculosis program during World War II. Photograph courtesy of the National Library of Medicine, Image #B017302.

“Good Tuberculosis Men”

Soon appropriating freely, pledging “all of the resources of the country“ to meet the crisis, the War Department was constantly readjusting to meet the escalating emergency.

The National Research Council Committee on Medicine, Subcommittee on Tuberculosis, chaired by Long, met for the first time on 24 July 1940 and prioritized its responsibilities: first, develop recommendations on how to screen draft registrants for tuberculosis; second, screen civilians in federal service and wartime industries; third, figure out how to care for people rejected by the draft for the disease; and finally, help civilian and military agencies prepare for tuberculosis in war refugee populations. In its first nine-hour meeting, the subcommittee decided on centralized tuberculosis screening centers at 200 recruiting stations and generated a list of tuberculosis specialists nationwide to evaluate recruits and interpret X-rays at those centers. Subcommittee members stressed the importance of maintaining good records for processing any subsequent benefits claims and, most importantly, called for X-ray screening of all inductees—not just those who looked like they might have tuberculosis.

The War Department leadership initially rejected such comprehensive screening of inductees as expensive and time-consuming. The fact that tuberculosis death rates in the country had fallen two-thirds from 140 per 100,000 people in 1917 to 45 per 100,000 people in 1941, and in the Army from 4.6 per 1,000 in 1922 to 1.4 per 1,000 in 1940, may have led to complacency. But Long, his colleagues, and the national tuberculosis community, mindful of the cost to the nation in sickness, death, and disability benefits in the previous war, persisted. The American College of Chest Surgeons asked in July 1940, “Shall We Spread or Eliminate Tuberculosis in the Army?” and their president, Benjamin Goldberg, reported that the VA had spent almost $1.2 billion on tuberculosis patients through 1940. One medical officer calculated that 31 percent of all veterans who died as a result of World War I service and whose dependents received benefits, had died of tuberculosis. Even the lay press chimed in with a TIME magazine article, “TB Warning,” that stressed the importance of chest X-rays.16 Advocates pointed out that X-ray technology was more available and less expensive than in the previous war, and radiologists were more plentiful and skillful. They were also confident that new technology, such as the development of a lens that allowed the direct and rapid photography of a fluoroscopic image and new 4 x 5 inch films, which made storage and transport easier than that of the 11 x 14 inch films, rendered screening more practical than in 1917–18.

The Army Medical Department agreed with the National Research Council subcommittee. Since 1934 it had required X-rays for all Army personnel assigned overseas, but it had not yet convinced the War Department on universal screening. In June 1941, Brigadier General (Brig. Gen.) Charles Hillman, Chief, Office of The Surgeon General Professional Service Division, told the National Tuberculosis chairman, C. M. Hendricks, that “the desirability of routine X-rays had long been recognized by the Surgeon General’s Office,” but “considerations other than medical entered the picture and the character of induction

Camp Follower: Tuberculosis in World War II 277

Examinations had to be adapted to the limitations of time, place, and available equipment.” When Fitzsimons informed Hillman later that new recruits were arriving at the hospital with tuberculosis, he responded almost plaintively. “I am working with the Adjutant General to devise some method by which every volunteer for enlistment in the Regular Army will have a chest X-ray and serological test before acceptance.” He asked for all available evidence of sick recruits, explaining that “data on Regular Army men of short service now in Fitzsimons with tuberculosis will help me get the thing across.” As the data and advice accumulated, in January 1942, the Adjutant General required that all voluntary applicants and reenlisting men be given chest X-rays. Finally, on 15 March 1942, mobilization regulations made chest X-rays mandatory in all induction physicals.

With universal screening in place, Long, as chief of the tuberculosis branch in the Office of The Surgeon General, oversaw the screening process and faced a task similar to that of George Bushnell in 1917–18, finding that fine line between excluding as much tuberculosis as possible from the Army without rejecting too few or too many men. Conscious of his predecessor’s miscalculations, Long was careful not to criticize Bushnell’s tuberculosis program, at one point noting that World War I medical officers were “not to be reproached for not having knowledge that came into existence only later, any more than the chief of the Army air service in 1917 is to be reproached because more efficient airplanes are available now than then.”

The wartime emergency produced a public health campaign regarding tuberculosis and other disease threats. A War Department pamphlet, What Every Citizen Should Know about Wartime Medicine, presented the issue as one of maintaining troop health and limiting public costs. “The strenuous activity of soldiering is likely to cause extension of an incipient (early) tuberculous invasion of the lungs, or to precipitate the breakdown and reactivation of arrested cases,” it explained. Such illness could result in disability “and the necessity of providing long care of these patients in military hospitals where they must remain isolated from nontuberculous patients.” The Public Health Service also created a tuberculosis office to handle the expected increase in tuberculosis, and, as the National Research Council Subcommittee recommended, gave war industry workers chest examinations.

As military and civilian screening boards found thousands of people with active tuberculosis and sent many of them to tuberculosis sanatoriums and hospitals, they generated what a public health nurse referred to as “potentially the greatest case finding program that workers in tuberculosis control have ever known.” At the same time, however, war mobilization drew civilian medical personnel into the military, reducing staffing in home front institutions. Army medical personnel ultimately numbered more than 688,000, including 48,000 physicians in the Medical Corps, 14,000 dentists in the Dental Corps, and 56,000 nurses in the Army Nurse Corps—a large portion of the nation’s medical professionals.27 To maintain his nursing staff, VA Director Frank Hynes even asked the Army Nurse Corps in May 1942 not to hire VA nurses away from his hospitals.

Army tuberculosis rates during World War II, while lower than during World War I, did show a similar “U” curve with high rates at the beginning of the war as the Selective Service built up the military forces and cases that had eluded screening became active during training or combat (Figure 8-2). Tuberculosis rates fell as radiologists became more proficient at identifying tuberculosis infections, and then another sharp, higher increase in cases at the end of the war as discharge examinations found people who had developed active tuberculosis during their service. Postwar studies also revealed a seemingly paradoxical phenomenon that during the war military personnel serving overseas had lower tuberculosis rates than those serving in the United States, yet higher rates when they returned home.

chart-comparing-incidence-rates-of-tb-in-wwi-wwii

chart-comparing-incidence-rates-of-tb-in-wwi-wwii

Chart comparing the incidence curves of tuberculosis in the Army during World War I and World War II. From Esmond R. Long, “Tuberculosis,” in John Boyd Coates, Robert S. Anderson, and W. Paul Havens, eds., Internal Medicine in World War II, Medical Department, U.S. Army in World War II, vol. 2, Infectious Diseases (Washington, DC: Office of The Surgeon General, Department of the Army, 1961), chart 17, p. 335. Available at http://history.amedd.army.mil/booksdocs/wwii/infectiousdisvolii/chapter11chart17.pdf.

The Medical Department of the United States Army in the World War. Communicable and Other Diseases. Washington: U. S. Government Printing Office, 1928, vol. IX, pp. 171-202.
Letter, The Adjutant General, to Commanding Generals of all Corps Areas and Departments, 25 Oct. 1940, subject: Chest X-rays on Induction Examinations.
M. R. No. 1-9, Standards of Physical Examination During Mobilization, 31 Aug. 1940 and 15 Mar. 1942
Long, E. R.: Exclusion of Tuberculosis. Physical Standards for Induction and Appointment.[Official record.]

Long, E. R., and Stearns, W. II.: Physical Examination at Induction; Standards With Respect to Tuberculosis Induction and Their Application as Illustrated by a Review of 53,400 X-ray Films of Men in the Army of the United States. Radiology 41: 144-150, August 1943.
Long, Esmond R., and Jablon, Seymour: Tuberculosis in the Army of the United States in World War II. An Epidemiological Study with an Evaluation of X-ray Screening. Washington: U. S. Government Printing Office, 1955.

It is estimated that, before roentgen examination became mandatory (MR No. 1-9, 15 March 1942), one. million men had been accepted without this form of examination. Where roentgen examination was practiced, it resulted in a rejection rate of about 1 percent for tuberculosis. Applying this figure, it can be estimated that some 10,000 men were accepted who would have been rejected if they had been subjected to chest roentgen-ray study. Various studies have shown that approximately one-half of these would have been cases of active

http://history.amedd.army.mil/booksdocs/wwii/PM4/CH14.Tuberculosis.htm

Troops who developed tuberculosis were not discovered until their separation examinations, conducted when they were once again in the United States.

In the end, the screening process rejected 171,300 men for tuberculosis as the primary cause (thousands more had tuberculosis in addition to the disqualifying condition), and Long calculated that this saved the government millions of dollars in hospitalization costs. After the war, however, Long identified two factors that allowed tuberculous men into the Army: the failure to screen all inductees until March 1942, and the 4 x 5 inch stereoscopic (fluorographic) films, which were used in the interest of speed but which Long believed caused examiners to miss about 10 percent of minimal tuberculosis lesions in recruits. To better understand the latter problem he had two radiologists read the same X-rays and found substantial disagreement between their findings. Long therefore concluded that “if the induction films had each been read by two different radiologists, undoubtedly many more of the men who had tuberculosis at entry could have been excluded from service.” The Army ultimately discharged 15,387 enlisted men for tuberculosis during the war, which earned it thirteenth position as a cause of disability discharge.

American military forces fought in nine theaters of war—five in the Pacific and Asia, the other four in North Africa, the Mediterranean, Europe, and the Middle East. The Allies gave priority to defeating Germany and Italy in Europe beginning with operations in North Africa and the Mediterranean. After fighting in Tunisia in 1942–43, the Allies invaded Sicily on 10 July 1943, and moved up the Italian peninsula. By April 1944—in preparation for the D-Day invasion on 6 June 1944—the United States had more than 3 million soldiers in Europe, supported by 258,000 medical personnel managing a total of 318 hospitals with 252,050 beds. The war against Japan got off to a slower start as U.S. military forces developed the means to execute an island war across vast expanses of ocean. After fighting began in the Southwest Pacific, military forces grew from 62,500 troops in March 1942 to 670,000 in the summer of 1944 with 60,140 medical personnel. Even though military personnel developed tuberculosis in all of the nine theaters, the numbers were not high and tuberculosis was not a major military problem. In the Southwest Pacific theater, for example, only sixty-four of more than 40,000 hospital admissions were for the disease.

Tuberculosis was of the greatest consequence in the North Africa and Mediterranean theaters, in part due to poor screening early in the war, but also because, according to historian Charles Wiltse, it was the theater “in which the lessons of ground combat were learned by the Medical Department as much as by the line troops.” In general, medical personnel learned the importance of treating battle casualties as promptly as possible and keeping hospitals and clearing stations mobile and far forward to shorten evacuation and turnaround times. With regard to tuberculosis, the Medical Department had to relearn the World War I lesson of the importance of having skilled practitioners—or “good tuberculosis men”—in theater. They also ascertained which treatments were appropriate close to the battle lines and which were not, and when and how best to evacuate tubercular patients to the United States.

When soldiers with tuberculosis began to appear at Army medical stations in North Africa in late 1942, Major General (Maj. Gen.) Paul R. Hawley, chief of medical services for the European theater of operations, called for a tuberculosis specialist. On Long’s recommendation, Hawley appointed Col. Theodore Badger (Figure 8-3) as a senior consultant in tuberculosis on 2 January 1943. A professor of medicine at the Harvard School of Medicine, Badger had served in the Navy during World War I, and then attended Yale and Harvard where he earned his medical degree. Chief of medical service of the 5th General Hospital (GH), organized out of Harvard, Badger would play a role similar to that played by Gerald Webb during World War I—medical specialist, teacher, and troubleshooter.

Assessing the tuberculosis situation in the Mediterranean theater, Badger identified five hazards: (1) the development of active disease in American troops who had not been X-rayed upon induction; (2) association with British troops and civilians who had not been screened for tuberculosis; (3) drinking of nonpasteurized and possibly infected milk that could transmit tuberculosis; (4) battlefield conditions that could activate soldiers’ latent infections; and (5) the undetermined effects of other respiratory infections.41 Badger soon got the Army to use pasteurized milk and to establish X-ray centers with the proper equipment and trained staff, but he was not able to examine the thousands of American soldiers in the war zone. To gauge the extent of the tuberculosis problem he therefore arranged for a mobile X-ray unit to conduct spot surveys of troops in the field. Three examinations of some 3,000 troops each found only about 1 percent with signs of tuberculosis. To avoid losing manpower, Badger reported in mid-1943 that “up to the present time no individual has been removed from duty because of X-ray findings, and follow-up study has, so far, not indicated the necessity for it.” Badger planned to recheck those with suspicious films every few months to see if the signs had advanced. Badger recommended that patients with pleural effusion, the accumulation of fluid between the layers of the membranes that line the lungs and chest cavity that often indicates tuberculosis, be evacuated back to the United States. He also ended the practice of transporting some tuberculosis patients sitting up

. As the first true air war, World War II saw the introduction of air evacuation when Army aeromedical squadrons deployed in early 1943. After successful trials in the Pacific and North Africa, air evacuation increased so that during the Battle of the Bulge (1944–45), some patients arrived in U.S. hospitals within three days of being wounded. Some medical officers were concerned about the effects of transporting tuberculosis patients by air where they would be exposed to high speeds, jolting, and reduced air pressure. Tuberculosis specialists in New Mexico and Colorado therefore studied 143 white, male military patients, twenty-two-years old to twenty-eight-years old, with active tuberculosis flown to Army hospitals in nonpressurized air ambulances for any signs of trouble. Fearing the worst, they instead found that “severe discomfort, pulmonary hemorrhage, and spontaneous pneumothorax did not occur in the series either during or following the flight,” and concluded that air transport up to 10,000 feet was safe and preferable to time-consuming travel by water. By the end of the war the consensus was that rapid air evacuation to the United States also reduced the need to give a tuberculosis patient a pneumothorax in the field.

From the roof of Fitzsimons’ new building in April 1943, Rocky Mountain News reporter John Stephenson could see the Rocky Mountain Arsenal, the Denver Ordnance Plant, and Lowry Field, “places where the Army studies how to kill people.” But, he wrote, “The Army is merciful. It lets the right-hand of justice know what the left hand of mercy is doing at Fitzsimons General Hospital.” The largest Army hospital in the world, Fitzsimons had 322 buildings on 600 acres, paved streets with traffic lights, a post office, barbershop, pharmacy school, dental school, print shop, bakery, fire department, and chapel. It was, wrote Stephenson, “a city of 10,000.”61 No longer a liability, Fitzsimons was the pride of the Army Medical Department. One Army inspector reported that “it is apparent that no expense has been spared in this extraordinary building or in the general equipment and maintenance of the whole hospital plant.”62 As Congressman Lawrence Lewis had hoped, Fitzsimons’ mission now extended beyond caring for tuberculosis patients to meeting the general medical and surgical needs of the wider military community in the Denver region.

During the war the hospital maintained about 3,500 beds, reaching its highest daily patient population after the war—3,719 on 3 February 1946. The annual occupancy rate, calculated in patient days, increased from 603,683 in 1942 to a high of 1,097,760 for 1945, about 85 percent capacity.

With the reduction of tuberculosis in the Army over the years, the percentage of tuberculosis patients among all those at Fitzsimons had declined from 80 percent to 90 percent in the 1920s to 40 percent to 50 percent in the late 1930s. As the Army grew it now rose again. During the war Fitzsimons admitted more than 8,100 patients with tuberculosis. In fact, in 1943, only eighteen patients had battle injuries; the rest were in the hospital for illness and noncombat injuries. Unlike during the previous war, however, this Medical Department had a network of more than fifty veterans’ hospitals to which it could transfer patients too disabled by tuberculosis or other disease or injury to return to duty. Now, instead of allowing patients to stay in the service and receive the benefit of hospitalization with the hopes that they would recover and return to duty, the Medical Department discharged patients to VA hospitals as soon as they were determined to be unfit for military service, thereby reserving capacity for active-duty personnel. Maj. D. P. Greenlee had returned from a training course in penicillin therapy at Bushnell General Hospital in Utah to supervise the administration of the new drug on a variety of infections. He soon reported a cure rate of 93 percent. There were fewer victories in tuberculosis treatment.

During the war about one-quarter of all tuberculosis patients were treated with pneumothorax. During the war Fitzsimons surgeon Col. John B. Grow and other surgeons tried lung resection to treat tuberculosis, with few patient deaths. In 1946, however, when Grow’s staff contacted thirty patients who had had such surgery, they found that half of them were doing well, but three others had died, seven were seriously ill, and the rest were still under treatment. “It was felt that pulmonary resection in the presence of positive sputum was extremely hazardous and the indications were consequently narrowed down.”

Outside the operating rooms, the “City of 10,000” had a rich social life with people arriving at the post from all corners of the country. With Congressman Lewis’s acquisition of the School for Medical Technicians, Fitzsimons assumed the role of medical trainer, offering six- to twelve-week courses in technical training for dental, laboratory, X-ray, surgical, clinical, and pharmacy assistants. By 1946 the School had graduated more than 28,000 such technicians to serve around the world. The Women’s Army Corps arrived at Fitzsimons in February 1944 when 165 women attended the medical technicians school as part of the first coeducational class.74 Members of the Women’s Army Corps, rehabilitation aides, Education Department staff, dietitians, as well as nurses increased the female presence at Fitzsimons, as did activities of welfare organizations such as the Gold Star Mothers, the Red Cross, and the Junior League. Fitzsimons’ patients and staff also enjoyed visits from celebrities, including Jack Benny, Miss America, Gary Cooper, Dorothy Lamour, and other entertainers such as the big band leader Fred Waring and his Pennsylvanians, the Denver Symphony Orchestra, and an African American Methodist Church children’s choir from Denver. Like communities across the country, the hospital participated in war bond campaigns and had a huge war garden that produced thousands of ears of sweet corn and bushels of other vegetables.

Despite national mobilization and generous congressional funding, the Army could not escape the strain on its hospitals. By July 1944, Fitzsimons had reached capacity so the Medical Department designated two more hospitals as specialty centers for tuberculosis. Earl Bruns’ widow Caroline, who lived in Denver at the time, was no doubt pleased when the department named Bruns General Hospital in Santa Fe, New Mexico, in honor of her husband. Bruns along with Moore General Hospital in Swannanoa, North Carolina, cared for enlisted patients with minimal or suspected tuberculosis.

As Allied troops liberated France in 1944 and crossed into Germany they encountered thousands of refugees or “displaced persons”—escaped prisoners from Nazi concentration camps, exhausted and terrified Jews, slave laborers, political prisoners, Allied POWs, and other victims. The Nazi camps that held these people served as incubators for diseases such as tuberculosis and typhus, and the frightened, sick, and starved refugees inundated Army hospitals in late 1944 and early 1945. Theodore Badger reported one of the first waves that arrived on 18 December 1944 when 304 men, most of them Russians, came to the 50th GH in Commercy, France. They had been in the Nazi labor camps for the mines and heavy industries, where thousands died and survivors were malnourished and sick. All of the 304 had tuberculosis, 90 percent with moderate or advanced disease. Four were dead on arrival, eight more died in the first week, and one-third of the patients would die by May.96 Alarmed, Gen. Hawley, Chief Surgeon of the European Theater of Operations, ordered that all displaced civilians and recovered military personnel be examined for signs of tuberculosis “to establish the gravity of the situation.” The situation was dire. At one time the 46th GH had more than 1,000 tuberculosis patients, all recovered Allied POWs, causing Esmond Long to remark that the hospital “had the largest number of tuberculosis patients of any Army hospital in the world.”

The 46th GH from Portland, Oregon, which had cared for tuberculosis patients in the Mediterranean theater, also stood on the front lines of the tuberculosis problem in Europe. Serving at Besancon, France, the hospital would receive the Meritorious Service Unit Plaque and Col. J. G. Strohm, the commanding officer, the Bronze Star Medal for service during the liberation of France. During the spring of 1945, the 46th GH admitted 2,472 Russians, forty-one Poles, and 128 Yugoslav POWs and former slave laborers freed by American forces. The influx began on 12 March and within four days the 46th GH had admitted 1,200 such patients.

“The hospital staff was agast [sic] at the terrible physical condition of these people,” reported the hospital commander.99 When Badger visited the 46th GH in March 1945 he said the patients “constitute one of the most seriously affected groups with tuberculosis and malnutrition that I have ever seen,” explaining that most of them suffered “acute fulminating, rapidly fatal disease, mixed with chronic, slowly progressive, fibrotic tuberculosis. ”Medical personnel (Figure 8-4) cared for these patients as best they could, comforting many of them as they died. They began the rest treatment with some men but, as Badger reported, convincing Allied POWs to submit to absolute bed rest after months of confinement was “practically impossible.” Badger was able to report that after a month “those men who did not die of acute tuberculosis showed marked improvement.”

46th General Hospital nurses who cared for former prisoners of war.

46th General Hospital nurses who cared for former prisoners of war.

Figure 8-4. 46th General Hospital nurses who cared for former prisoners of war. Photograph courtesy of Oregon Health Sciences University, Historical Collections and Archives, Portland, Oregon.

26th Gen Hospital WWII, North Africa

26th Gen Hospital WWII, North Africa

In late 1944 Hawley requested 100,000 additional hospital beds for the displaced persons and POWs he expected to encounter after the German surrender, but Gen. George Marshall and Secretary of War Henry L. Stimson denied the request, believing they could not spare resources of that magnitude. The European Theater, they decided, must use German medical personnel and hospitals to care for the prisoners. Only after the war did American hospital units transfer their equipment and supplies to German civilians and Allies for their use.

The liberation of Europe also freed American POWs, who, not surprisingly, had higher rates of tuberculosis than other American military personnel. Captured British medical officer Capt. A. L. Cochrane cared for some of them in the prison where he was confined and noted sardonically that imprisonment was “an excellent place to study tuberculosis; [and] to learn the vast importance of food in human health and happiness.” German prison guards gave POWs only 1,000 to 1,500 calories per day, so Red Cross food parcels, which provided an additional 1,500 daily calories per person, were critical to preventing malnutrition and physical breakdown. Cochrane observed that the American and British POWs received the most parcels and had the lowest tuberculosis rates in the camp, while the Russians received nothing at all and had the highest rates. During the eighteen months that French POWs received the Red Cross parcels, he noted, just two men of 1,200 developed tuberculosis but when parcels for the French ceased to arrive in 1945, their tuberculosis rate rose to equal that of the Russians. The situation, he concluded, showed the “vast importance of nutrition in the incidence of tuberculosis.” Not all Americans got their parcels, though. William H. Balzer, with an American artillery unit, was captured in February 1943, and remembered how German guards stole the Americans’ packages.
Balzer survived imprisonment but never recovered from the ordeal. Severely disabled (70 percent), he died in 1960 on his forty-sixth birthday.

Exact tuberculosis rates among American POWs are not known because the rush of events surrounding the liberation of prisoners from German and Japanese control prevented a systematic X-ray survey. Rates did appear to be higher, though, for prisoners of the Japanese than for prisoners of the Germans. Long reported that about 0.6 percent of recovered troops from European POW camps had tuberculosis, whereas data from the Pacific theater suggested that 1 percent of recovered prisoners had tuberculosis. Moreover, an analysis of the chest X-rays done at West Coast debarkation hospitals revealed that 101 (or 2.7 percent) of 3,742 former POWs of the Japanese showed evidence of active tuberculosis. John R. Bumgarner was a tuberculosis ward officer at Sternberg General Hospital in Manila, the Philippines, before the war. A POW for forty-two months after the Japanese invasion, he described his experience in Parade of the Dead. Bumgarner did what he could to care for many of the 13,000 prisoners in the camp, but knew that “my patients were poorly diagnosed and poorly treated.” The narrow cots were so close together, he wrote, “the crowding and the breathing of air loaded with this bacilliary miasma from coughing ensured that those mistakenly segregated would be infected.”

Bumgarner was able to stay relatively healthy throughout his imprisonment. His luck ended, however, because “on my way home across the Pacific I had the first symptoms of tuberculosis.” Severe chest pain and subsequent X-rays at Letterman Hospital in San Francisco revealed active disease. “I had gone through more than four years of hell—now this!” Discharged on disability for tuberculosis in September 1946 he began to work at the Medical College of Virginia but soon had a lung hemorrhage. This time it took eight years of rest, with surgery and new antibiotic treatment for him to recover. By 1956, however, Bumgarner had married his sweetheart, Evelyn, and begun a medical career in cardiology that lasted for thirty years.

Tuberculosis continued to take its toll on POWs for years after the war. The VA followed POWs as a special group because, explained Long, of “the hardships that many of these men endured, and the notorious tendency for tuberculosis to make its appearance years after the acquisition of infection.” A follow-up study published in 1954 reported that for American POWs during the six years after liberation tuberculosis was the second highest cause of death, after accidents.

If the challenges Army medical personnel faced in caring for sick and starving POWs and refugees were unprecedented, the scale of disease and suffering they encountered in the Nazi concentration camps was almost unimaginable. Allied troops had heard about secret and deadly camps but were not prepared for what they found. As the Allies converged on Berlin from the East and the West, the Nazis evacuated thousands of prisoners—most of them Jews seized from across Europe, as well as POWs—to interior camps to hide their crimes and prevent the inmates from falling into Allied hands. These evacuations became death marches as SS (abbreviation of Schutzstaffel, which stood for “defense squadron”) guards beat and murdered people, and failed to feed them for days on end. Survivors were crowded into camps such as Buchenwald and Dachau making them even more chaotic and deadly. Americans, therefore, liberated camps that were riven with disease, especially typhus, tuberculosis, and malnutrition.

The Allies liberated Buchenwald on 11 April 1945. The following day the world learned that Franklin Roosevelt had died. Americans then liberated Dachau on 29 April, the day Italian partisans executed Mussolini in Milan, and the next day Hitler killed himself in his bunker. Dachau (Figure 8-5) had been the first of hundreds of concentration camps in the German Reich to which the Nazis sent political enemies, the disabled, people accused of socially deviant behavior, and, increasingly after the Kristallnacht pogroms of 1938, Jewish men, women, and children. In January1945 Dachau held 67,000 prisoners, but with troops of the Seventh U.S. Army approaching the SS began evacuating and killing prisoners. Capt. Marcus J. Smith, a medical officer in his thirties, arrived at Dachau on 30 April 1945, the day after liberation, part of a small team trained to treat persons displaced by the war. Horror greeted him outside the camp in a train of forty boxcars loaded with more than two thousand corpses. Smith called the frost that had formed on the bodies in the intense cold, “Nature’s shroud.” Inside Dachau he encountered more grotesque piles of naked, skeletal bodies of prisoners and scattered, mutilated bodies of German guards.

Dachau survivors gather by the moat to greet American liberators, 29 April 1945

Dachau survivors gather by the moat to greet American liberators, 29 April 1945

Figure 8-5. Dachau survivors gather by the moat to greet American liberators, 29 April 1945. Photograph courtesy of the United States Holocaust Memorial Museum, Washington, DC.
Smith found more than 30,000 prisoners, mostly Jews of forty nationalities, and all men except for about 300 women the SS had kept in a brothel. They were in desperate condition. Typhus and dysentery raged, at least half of the prisoners were starving, and hundreds had advanced tuberculosis. “The well, the sick, the dying, and the dead lie next to each other in these poorly ventilated, unheated, dark, stinking buildings,” Smith told his wife. The men were “malnourished and emaciated, their diseases in all stages of development: early, late, and terminal.” He wondered, “What am I going to write in my notebook?” and then started a list of needed supplies: clothes, shoes, socks, towels, bedding, beds, soap, toilet paper, more latrines, and new quarters. He almost despaired. “What are we going to do with the starving patients? How will we care for them without sterile bandages, gloves, bedpans, urinals, thermometers, and all the basic material? How do we manage without an organization? No interns, no nursing staff, no ambulances, no bathtubs, no laboratories, no charts, and no orderlies, no administrator, and no doctors.… I feel helpless and empty. I cannot think of anything like this in modern medical history.”

American efforts did prevent a deadly typhus epidemic from sweeping postwar Europe and helped contain tuberculosis rates in Germany, but the Nazis had created a human catastrophe so immense that even the most dedicated efforts would at times fall short.

Faced with horror on such a scale, Smith and other Army Medical Department personnel assigned to the concentration camps threw themselves into the work of cleansing, comforting, treating, and nurturing their patients. American commanders called in at least six Army evacuation hospitals (EH) to care for the sick and dying in the liberated camps. EH No. 116 and EH No. 127 began arriving at Dachau on 2 May with some forty medical officers, forty nurses, and 220 enlisted men. Consulting with Smith and his team, the units set up in the former SS guard barracks. They tore out partitions to create larger wards, scrubbed the walls and floors with Cresol solution, sprayed them with dichloro-diphenyl-trichloroethane (DDT), and then set up cots to create two hospitals of 1,200 beds each. Medical staff also discovered physician-prisoners who had cared for the sick and injured as well as they could, and could now advise and assist, and in some cases translate for the medical staff. In two days the hospitals were ready to admit patients by triage, segregating them by disease and prognosis. Laurence Ball, the EH No. 116 commander, noted that more than 900 patients had “two or more diseases, such as malnutrition, typhus, diarrhea, and tuberculosis.” Staff bathed and deloused them, gave them clean pajamas, and put them to bed.

Death by overeating was but one of the dangers that the prisoners faced. During May 1945, American hospitals at Dachau had more than 4,000 typhus patients and lost 2,226 to typhus and other diseases. Typhus, a rickettsial disease transmitted by body lice, had a mortality rate as high as 40 percent. With no medical cure, treatment consisted of supportive care—keeping patients clean and nourished—to mitigate effects of prolonged fever, such as the breakdown of tissue into gangrene. The Americans knew that typhus had taken three million lives in Eastern Europe after World War I, but now they had a means of prevention and better weapons—a typhus vaccine and DDT. On 2 May, the day the evacuation hospitals arrived, the commander of the Seventh Army imposed quarantines for typhus and tuberculosis, and summoned the U.S. Typhus Commission, which had controlled a typhus outbreak in Naples, Italy. A typhus team arrived the next day and began to immunize American personnel and dust them with DDT. On 7 May staff began to vaccinate inmates but kept typhus patients isolated for at least twenty-one days from the onset of illness to prevent transmission to others. This meant that the Americans did not immediately enter the inner camp barracks—the worst, most typhus-infested part of the camp—nor did they quickly relieve crowding there for fear of spreading typhus-bearing lice. It took over a week for personnel to prepare more spacious and clean quarters.

Smith wrote his lists, reported to his wife, and kept track of the daily death toll, finding comfort as the number of people who died daily fell from 200 during the first week to twenty by the end of May. Another medical officer performed autopsies. He chose ten of the dead bodies, five from the death train and five from the camp yard, to see what had caused their deaths. All had typhus and extreme malnutrition, eight had advanced tuberculosis, and some bodies had signs of fractures and head injuries.

Survivors in Dachau, 1 May 1945

Survivors in Dachau, 1 May 1945

By the end of May, conditions at Dachau had improved. Typhus was abating and American officials began to release groups of inmates by nationality. Beyond Dachau, the U.S. Typhus Commission tracked down new cases of typhus in civilian and military populations, deloused one million people, sprayed fifteen tons of DDT, and created a cordon sanitaire on the Rhine requiring all who crossed from Germany to be vaccinated and dusted to prevent the spread of disease. Thus the Army averted a broader typhus epidemic.138 The tuberculosis situation was more complicated and presented the Americans with a conundrum. What to do with thousands of people suffering from a long-term, infectious, and deadly disease?

As with the American POWs, tuberculosis continued to follow Dachau survivors into their new lives. Thousands of Jewish survivors emigrated to what would become the state of Israel. Fifteen years after liberation, the Israeli Minister of Health reported that although concentration camp survivors comprised only 25 percent of the population, they accounted for 65 percent of the tuberculosis cases in the country. Tuberculosis continued to thrive in Europe as well.

Historian Albert Cowdrey has credited the American actions with preventing a number of postwar scourges: “No one can prove that a great typhus epidemic, mass deaths of prisoners of war, or widespread outbreaks of disease among the German population would have taken place without the efforts of Army doctors of the field forces and the military government.” But, he continued, “conditions were ripe for such tragedies to occur, and Army medics brought both professional knowledge and military discipline to forestalling what might have been the last calamities of the war in Europe.” Thus, as usual, in public health the good news is no news at all.

Thousands of men survived the Vietnam War because of the quality of their hospital care. US hospitals in Vietnam were the best that could be deployed, incorporating several improvements from previous field hospitals. Army doctors were better trained, and they had good facilities at the semi-permanent base camps. As a result, more advanced surgical procedures were possible: more laparotomies, thoracotomies, vascular repairs (including even aortic and carotid repairs), advanced neurosurgery for head wounds, and other medical procedures. Blood transfusions were performed, with massive quantities of blood available for seriously wounded patients; some patients received as many as 50 units of blood. Advances in equipment resulted in the development of intensive care units with mechanical ventilators. There were far more medications available for particular diseases than in earlier conflicts.

With about 30 physicians assigned, the 12th could keep four or five operating tables going all day, and two or three all night. A common practice was delayed primary closure for wounds with a high likelihood of infection. Instead of stitching the wound closed immediately, dirt and contaminants were flushed out, bleeding was controlled, dead flesh was removed (debrided), the wound was packed with sterile gauze, and antibiotics were administered. For a few days the patient healed, while nurses changed the bandages and made sure the wound did
not get worse. Then doctors removed any remaining contaminants or dead flesh and stitched up the wound. This procedure reduced the incidence of infection compared to immediate wound closure at a risk of a larger scar.

In any given year in Vietnam, about one soldier in three was hospitalized for disease. The main causes for hospitalization were malaria, psychiatric problems, and ordinary fevers. Although many men fell sick, competent care was available and most recovered quickly and returned to duty.

The war spurred advances in surgery and medical trauma research. New surgical techniques allowed limbs that previously would have been amputated to remain functional. Nurse anesthetist Rosemary Sue Smith recalled the development of new blood-handling procedures:

We started separating blood into its components, because we were getting a lot of aggregates that were causing a lot of disseminated intravascular coagulopathy in patients, and causing a lot of blood clots, and pulmonary thrombosis, and a lot of ARDS, Adult Respiratory Distress Syndrome, which started in Da Nang and was called Da Nang Lung initially. It has developed into today being called Adult Respiratory Distress Syndrome, and they did a lot of research on this, and they were having us separate our blood into its components, into fresh frozen plasma and into platelets, and then we started doing blood tests to see which the patients would need. If their platelets were low, or if their blood clotting factors were low, we would just give them the particular products. We actually started breaking these products down and administering them in the Vietnam War, and it’s carried over into civilian life now. They’re used today in acute trauma to prevent disseminated intravascular coagulopathy and prevent Adult Respiratory Distress Syndrome on massive traumas that have to be naturally resuscitated with blood and blood products.

In the 1960s, intensive care was still quite new and the 12th had only one (later two) intensive care wards fully equipped and staffed. A key piece of equipment was the ventilator, then called “respirator.” Ventilators worked on pure oxygen until 1969, when research revealed physiological problems from prolonged breathing of pure oxygen. Early ventilators required considerable maintenance; valves needed frequent cleaning or the machines broke down.

Antibiotics were important because of the wide variety of bacteria and large number of penetrating wounds; in the face of a possible systemic infection (the development of sepsis), antibiotics were delivered through an IV. Nurse Rosie Parmeter recalled having to prepare antibiotics to be delivered through an IV several times a day for each patient, a necessary but time-consuming task.

About two-thirds of patients cared for by the 12th were US military; the other third were mainly Vietnamese but also included nonmilitary Americans and Free World Military Assistance Forces personnel. Staff regularly dealt with the Vietnamese, both military and civilian, enemy and friendly. There were wards set aside for enemy prisoners (who were stabilized, then transferred to hospitals at POW camps) and civilians. Wounded South Vietnamese Army soldiers were also stabilized and transferred to hospitals run by the Army of the Republic of Vietnam (ARVN). Civilian patients often stayed longer because the war swamped the available hospitals for Vietnamese civilians.

Through the years of the Vietnam War, US forces sustained 313,616 wounded in action; at peak strength, there were 26 American hospitals. The 12th Evacuation Hospital was at Cu Chi for 4 years and treated just over 37,000 patients. Records for the 12th are incomplete, but the average died-of-wounds rate in Vietnam was about 2.8% of patients who reached a hospital alive. Applied to the 12th, that rate amounted to about 1,036 patients, including prisoners and Vietnamese as well as Americans. But over 36,000 people survived and could return home because of the treatment they received at the 12th Evac.

Sources:

Fort Bayard,  by David Kammer, Establishment of Fort Bayard Army Post
http://newmexicohistory.org/places/fort-bayard
George Ensign Bushnell, Colonel, Medical Corps, U. S. Army
THE ARMY MEDICAL BULLETIN, NUMBER 50 (OCTOBER 1939)
http://history.amedd.army.mil/biographies/bushnell
Chapter One, The Early Years: Fort Bayard, New Mexico
http://www.cs.amedd.army.mil/borden/FileDownloadpublic.aspx?docid=332041d7-dbd2-4edf-823f-29a66c0b65ef
Dachau concentration camp (Wikipedia)
http://en.wikipedia.org/wiki/Dachau_concentration_camp
Office of Medical History – United States Army
Esmond R. Long, M. D., TUBERCULOSIS IN WORLD WAR I
Chapter 14 – Tuberculosis
http://history.amedd.army.mil/booksdocs/wwii/PM4/CH14.Tuberculosis.htm

Chapter Four, Tuberculosis in World War I
Chapter Five, “A Gigantic Task”: Treating and Paying for Tuberculosis in the Interwar Period
Chapter Six, “Good Tuberculosis Women”: Tuberculosis Nursing during the Interwar Period
Chapter Seven, Surviving the Great Depression: Fitzsimons and the New Deal
Chapter Eight, Camp Follower: Tuberculosis in World War II
http://www.cs.amedd.army.mil/FileDownload aspx?
“Good Tuberculosis Men”: The Army Medical Department’s Struggle with Tuberculosis Carol R. Byerly
http://www.cs.amedd.army.mil/borden/FileDownloadpublic.aspx?docid=986faf8a-b833-46a8-a251-00f72c91da2f

The Global Distribution of Yellow Fever and Dengue
D.J. Rogers1, A.J. Wilson1, S.I. Hay1,2, and A.J. Graham1
Adv Parasitol. 2006 ; 62: 181–220. http://dx.doi.org:/10.1016/S0065-308X(05)62006-4.

http://www.historyofvaccines.org/content/timelines/yellow-fever

History of yellow fever
http://en.wikipedia.org/wiki/History_of_yellow_fever

Additional Reading:

Open Wound: The Tragic Obsession of William Beaumont.
Jason Karlawish

The Great Influenzs. John M. Barry.
Penguin. 2004.
Univ Mich Press. 2011.

Flu. The story of the great influenza pandemic of 1918 and
the search for the virus that caused it.
Gina Kolata.
Touchstone. 1999

Pestilence. A Medieval Tale of Plague.
Jeani Rector
The HorrorZime. 2012

Knife Man: The extraordinary life of John Hunter, Father of Modern Surgery
Wendy Moore.
Broadway Books. 2005

Hospital.
Julie Salamon.
Penguin Press. 2008.

Overdosed America.

John Abramson.
Harper. 2004.

Sick.
Jonathen Cohn.
Harper Collins. 2007.
.

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Prefacing the e-Book Epilogue: Metabolic Genomics and Pharmaceutics

Author and Curator: Larry H. Bernstein, MD, FCAP

 

Adieu, adieu, adieu …

Sound of Music

Snoopy - Charlie happiness

Snoopy – Charlie happiness

This work has been a coming to terms with my scientific and medical end of career balancing in a difficult time after retiring, but it has been rewarding.  In the clinical laboratories, radiology, anesthesiology, and in pharmacy, there has been some significant progress in support of surgical, gynecological, developmental, medical practices, and even neuroscience directed disciplines, as well as epidemiology over a period of half a century.  Even then, cancer and neurological diseases have been most difficult because the scientific basic research has either not yet uncovered a framework, or because that framework has proved to be multidimensional.  In the clinical laboratory sciences, there has been enormous progress in instrumental analysis, with the recent opening of molecular methods not yet prepared for routine clinical use, which will be a very great challenge to the profession, which has seen the development of large sample volume, multianalite, high-throughput, low-cost support emerging for decades.  The capabilities now underway will also enrrich the the capabilities of the anatomic pathology suite and the capabilities of 3-dimensional radiological examination.  In both pathology and radiology, we have seen the division of the fields into major subspecialties.  The development of the electronic health record had to take lessons from the first developments in the separate developments of laboratory, radiology, and pharmacy health record systems, to which were added, full cardiology monitoring systems.  These have been unintegrated.  This made it difficult to bring forth a suitable patient health record because the information needed to support decision-making by practitioners was in separate “silos”.  The mathematical methods that are being applied to the -OMICS sciences, can be brought to bear on the simplification and amplification of the clinicians’ ability to make decisions with near “errorless” discrimination, still allowing for an element of “art” in carrying out the history, physical examination, and knowledge unique to every patient.

We are at this time opening a very large, complex, study of biology in relationship to the human condition.  This will require sufficient resources to be invested in the development of these for a better society, which I suspect, will go on beyond the life of my grandchildren.  Hopefully, the long-term dangers of climate change will be controlled in that time.  As a society, or as a group of interdependent societies, we have no long term interest in continuing self-destructive behaviors that have predominated in the history of mankind.  I now top off these discussions with some further elucidation of what lies before us.

Metabolomics and systems pharmacology: why and how to model the human metabolic network for drug discovery

Douglas B. Kell and Royston Goodacre
School of Chemistry and Manchester Institute of Biotechnology, The University of Manchester, Manchester, UK
Drug Discovery Today Feb 2014;19(2)  http://dx.doi.org/10.1016/j.drudis.2013.07.014

Metabolism represents the ‘sharp end’ of systems biology,

  • because changes in metabolite concentrations
  • are necessarily amplified relative to
  • changes in the transcriptome, proteome and enzyme activities,
  • which can be modulated by drugs.

To understand such behaviour, we therefore need
(and increasingly have)

  • reliable consensus (community) models of the human metabolic network
  • that include the important transporters.

Small molecule ‘drug’ transporters are in fact metabolite transporters,

  • because drugs bear structural similarities to metabolites known
  • from the network reconstructions and from measurements of the metabolome.

Recon2 represents the present state-of-the-art human metabolic
network reconstruction; it can predict inter alia:

  1. the effects of inborn errors of metabolism;
  2. which metabolites are exometabolites, and
  3. how metabolism varies between tissues and cellular compartments.

Even these qualitative network models are not yet complete. As our
understanding improves so do we recognize more clearly the need for a systems (poly)pharmacology.

Modelling biochemical networks – why we do so
There are at least four types of reasons as to why one would wish to model a biochemical network:

  1. Assessing whether the model is accurate, in the sense that it
    reflects – or can be made to reflect – known experimental facts.
  2. Establishing what changes in the model would improve the
    consistency of its behaviour with experimental observations
    and improved predictability, such as with respect to metabolite
    concentrations or fluxes.
  3. Analyzing the model, typically by some form of sensitivity
    analysis, to understand which parts of the system contribute
    most to some desired functional properties of interest.
  4. Hypothesis generation and testing, enabling one to analyse
    rapidly the effects of manipulating experimental conditions in
    the model without having to perform complex and costly
    experiments (or to restrict the number that are performed).

In particular, it is normally considerably cheaper to perform
studies of metabolic networks in silico before trying a smaller
number of possibilities experimentally; indeed for combinatorial
reasons it is often the only approach possible. Although
our focus here is on drug discovery, similar principles apply to the
modification of biochemical networks for purposes of ‘industrial’
or ‘white’ biotechnology.
Why we choose to model metabolic networks more than

  • transcriptomic or proteomic networks

comes from the recognition – made particularly clear

  • by workers in the field of metabolic control analysis

– that, although changes in the activities of individual enzymes tend to have

  • rather small effects on metabolic fluxes,
  • they can and do have very large effects on metabolite concentrations (i.e. the metabolome).

Modelling biochemical networks – how we do so

Although one could seek to understand the

  1. time-dependent spatial distribution of signalling and metabolic substances within indivi
    dual cellular compartments and
  2. while spatially discriminating analytical methods such as Raman spectroscopy and
    mass spectrometry do exist for the analysis of drugs in situ,
  • the commonest type of modelling, as in the spread of substances in
    ecosystems,
  • assumes ‘fully mixed’ compartments and thus ‘pools’ of metabolites.

Although an approximation, this ‘bulk’ modelling will be necessary for complex ecosystems such as humans where, in addition to the need for tissue- and cell-specific models, microbial communities inhabit this superorganism and the
gut serves as a source for nutrients courtesy of these symbionts.

Topology and stoichiometry of metabolic networks as major constraints on fluxes
Given their topology, which admits a wide range of parameters for
delivering the same output effects and thereby reflects biological
robustness,

  • metabolic networks have two especially important constraints that assist their accurate modelling:

(i) the conservation of mass and charge, and
(ii) stoichiometric and thermodynamic constraints.

These are tighter constraints than apply to signalling networks.

New developments in modelling the human metabolic network
Since 2007, several groups have been developing improved but nonidentical models of the human metabolic network at a generalised level and in tissue-specific forms. Following a similar community-driven strategy in Saccharomyces cerevisiae, surprisingly similar to humans, and in Salmonella typhimurium,

we focus in particular on a recent consensus paper that provides a highly curated and semantically annotated model of the human metabolic network, termed

In this work, a substantial number of the major groups active in this area came together to provide a carefully and manually constructed/curated network, consisting of some 1789 enzyme-encoding genes, 7440 reactions and 2626 unique metabolites distributed over eight cellular compartments.  A variety of dead-end metabolites and blocked reactions remain (essentially orphans and widows). But Recon2 was able to

  • account for some 235 inborn errors of metabolism,
  • a variety of metabolic ‘tasks’ (defined as a non-zero flux through a reaction or through a pathway leading to the production of a metabolite Q from a metabolite P).
  • filtering based on expression profiling allowed the construction of 65 cell-type-specific models.
  • Excreted or exometabolites are an interesting set of metabolites,
  • and Recon2 could predict successfully a substantial fraction of those

Role of transporters in metabolic fluxes

The uptake and excretion of metabolites between cells and their macrocompartments

  • requires specific transporters and in the order of one third of ‘metabolic’ enzymes,
  • and indeed of membrane proteins, are in fact transporters or equivalent.

What is of particular interest (to drug discovery), based on their structural similarities, is the increasing recognition (Fig. 3) that pharmaceutical drugs also

  • get into and out of cells by ‘hitchhiking’ on such transporters, and not –

to any significant extent –

  • by passing through phospholipid bilayer portions
    of cellular membranes.

This makes drug discovery even more a problem of systems biology than of biophysics.

role of solute carriers and other transporters in cellular drug uptake

role of solute carriers and other transporters in cellular drug uptake

Two views of the role of solute carriers and other transporters in cellular drug uptake. (a) A more traditional view in which all so-called ‘passive’drug uptake occurs through any unperturbed bilayer portion of membrane that might be present.
(b) A view in which the overwhelming fraction of drug is taken up via solute transporters or other carriers that are normally used for the uptake of intermediary metabolites. Noting that the protein:lipid ratio of biomembranes is typically 3:1 to 1:1 and that proteins vary in mass and density (a typical density is 1.37 g/ml) as does their extension, for example, normal to the ca. 4.5 nm lipid bilayer region, the figure attempts to portray a section of a membrane with realistic or typical sizes and amounts of proteins and lipids. Typical protein areas when viewed normal to the membrane are 30%, membranes are rather more ‘mosaic’ than ‘fluid’ and there is some evidence that there might be no genuinely ‘free’ bulk lipids (typical phospholipid masses are 750 Da) in biomembranes that are uninfluenced by proteins. Also shown is a typical drug: atorvastatin (LipitorW) – with a molecular mass of 558.64 Da – for size comparison purposes. If proteins are modelled as
cylinders, a cylinder with a diameter of 3.6 nm and a length of 6 nm has a molecular mass of ca. 50 kDa. Note of course that in a ‘static’ picture we cannot show the dynamics of either phospholipid chains or lipid or protein diffusion.

‘Newly discovered’ metabolites and/or their roles

To illustrate the ‘unfinished’ nature even of Recon2, which concentrates on the metabolites created via enzymes encoded in the human genome, and leaving aside the more exotic metabolites of drugs and foodstuffs and the ‘secondary’ metabolites of microorganisms, there are several examples of interesting ‘new’ (i.e. more or less recently recognised) human metabolites or roles thereof that are worth highlighting, often from studies seeking biomarkers of various diseases – for caveats of biomarker discovery, which is not a topic that we are covering here, and the need for appropriate experimental design. In addition, classes of metabolites not well represented in Recon2 are oxidised molecules such as those caused by nonenzymatic reaction of metabolites with free radicals such as the hydroxyl radical generated by unliganded iron. There is also significant interest in using methods of determining small molecules such as those in the
metabolome (inter alia) for assessing the ‘exposome’, in other words all the potentially polluting agents to which an
individual has been exposed.

Recently discovered effects of metabolites on enzymes 

Another combinatorial problem reflects the fact that in molecular enzymology it is not normally realistic to assess every possible metabolite to determine whether it is an effector (i.e.activator or inhibitor) of the enzyme under study. Typical proteins are highly promiscuous and there is increasing evidence for the comparative promiscuity of metabolites
and pharmaceutical drugs. Certainly the contribution of individual small effects of multiple parameter changes can have substantial effects on the potential flux through an overall pathway, which makes ‘bottom up’ modelling an inexact science. Even merely mimicking the vivo (in Escherichia coli) concentrations of K+, Na+, Mg2+, phosphate, glutamate, sulphate and Cl significantly modulated the activities of several enzymes tested relative to the ‘usual’ assay conditions. Consequently, we need to be alive to the possibility of many (potentially major) interactions of which we are as yet ignorant. One class of example relates to the effects of the very widespread post-translational modification on metabolic
enzyme activities.

A recent and important discovery (Fig. 4) is that a single transcriptome experiment, serving as a surrogate for fluxes through individual steps, provides a huge constraint on possible models, and predicts in a numerically tractable way and
with much improved accuracy the fluxes to exometabolites without the need for such a variable ‘biomass’ term. Other recent and related strategies that exploit modern advances in ‘omics and network biology to limit the search space in constraint-based metabolic modelling.

Fig 4. Workflow for expression-profile-constrained metabolic flux estimation

  1. Genome-scale metabolic model with gene-protein-reaction relationships
  2. Map absolute gene expression levels to reactions
  3. Maximise correlation between absolute gene expression and metabolic flux
  4. Predict fluxes to exometabolites
  5. Compare predicted with experimental fluxes to exometabolites

Drug Discovery Today

The steps in a workflow that uses constraints based on (i) metabolic network stoichiometry and chemical reaction properties (both encoded in the model) plus, and (ii) absolute (RNA-Seq) transcript expression profiles to enable the
accurate modelling of pathway and exometabolite fluxes. .

Concluding remarks – the role of metabolomics in systems pharmacology

What is becoming increasingly clear, as we recognize that to understand living organisms in health and disease we must treat them as systems, is that we must bring together our knowledge of the topologies and kinetics of metabolic networks with our knowledge of the metabolite concentrations (i.e. metabolomes) and fluxes. Because of the huge constraints imposed on metabolism by reaction stoichiometries, mass conservation and thermodynamics, comparatively few well-chosen ‘omics measurements might be needed to do this reliably (Fig. 4). Indeed, a similar approach exploiting constraints has come to the fore in denovo protein folding and interaction studies.

What this leads us to in drug discovery is the need to develop and exploit a ‘systems pharmacology’ where multiple binding targets are chosen purposely and simultaneously. Along with other measures such as phenotypic screening, and the integrating of the full suite of e-science approaches, one can anticipate considerable improvements in the rate of discovery of safe and effective drugs.

Metabolomics: the apogee of the omics trilogy
Gary J.!Patti, Oscar Yanes and Gary Siuzdak

Metabolites, the chemical entities that are transformed during metabolism, provide a functional readout of cellular biochemistry. With emerging technologies in mass spectrometry, thousands of metabolites can now be
quantitatively measured from minimal amounts of biological material, which has thereby enabled systems-level analyses. By performing global metabolite profiling, also known as untargeted metabolomics, new discoveries linking cellular pathways to biological mechanism are being revealed and are shaping our understanding of cell biology, physiology and medicine.

Metabolites are small molecules that are chemically transformed during metabolism and, as such, they provide a functional readout of cellular state. Unlike genes and proteins, the functions of which are subject to epigenetic regulation and posttranslational modifications, respectively, metabolites serve as direct signatures of biochemical activity and are therefore easier to correlate with phenotype. In this context, metabolite profiling, or metabolomics, has become a powerful approach that has been widely adopted for clinical diagnostics.

The field of metabolomics has made remarkable progress within the past decade and has implemented new tools that have offered mechanistic insights by allowing for the correlation of biochemical changes with phenotype.

In this Innovation article, we first define and differentiate between the targeted and untargeted approaches to metabolomics. We then highlight the value of untargeted metabolomics in particular and outline a guide to performing such studies. Finally, we describe selected applications of un targeted metabolomics and discuss their potential in cell biology.

  • metabolites serve as direct signatures of biochemical activity
  1. In some instances, it may be of interest to examine a defined set of metabolites by using a targeted approach.
  2. In other cases, an untargeted or global approach may be taken in which as many metabolites as possible are measured and compared between samples without bias.
  3. Ultimately, the number and chemical composition of metabolites to be studied is a defining attribute of any metabolomic experiment and shapes experimental design with respect to sample preparation and choice of instrumentation.

The targeted and untargeted workflow for LC/MS-based metabolomics.

a | In the triple quadrupole (QqQ)-based targeted metabolomic workflow, standard compounds for the metabolites of interest are first used to set up selected reaction monitoring methods. Here, optimal instrument voltages are determined and response curves are generated for absolute quantification. After the targeted methods have been established
on the basis of standard metabolites, metabolites are extracted from tissues, biofluids or cell cultures and analysed. The data output provides quantification only of those metabolites for which standard methods have been built.

b | In the untargeted metabolomic workflow, metabolites are first isolated from biological samples and subsequently analysed by liquid chromatography followed by mass spectrometry (LC/MS). After data acquisition, the results are processed by using bioinformatic software such as XCMS to perform nonlinear retention time alignment and identify peaks that are changing between the groups of samples measured. The m/z value s for the peaks of interest are searched in metabolite databases to obtain putative identifications. Putative identifications are then confirmed
by comparing tandem mass spectrometry (MS/MS) data and retention time data to that of standard compounds. The untargeted workflow is global in scope and outputs data related to comprehensive cellular metabolism.

Metabolic Biomarker and Kinase Drug Target Discovery in Cancer Using Stable Isotope-Based Dynamic Metabolic Profiling (SIDMAP)

László G. Boros1*, Daniel J. Brackett2 and George G. Harrigan3
1UCLA School of Medicine, Harbor-UCLA Research and Education Institute, Torrance, CA. 2Department of Surgery, University of Oklahoma Health Sciences Center & VA Medical Center, Oklahoma City, OK, 3Global High Throughput
Screening (HTS), Pharmacia Corporation, Chesterfield, MO.
Current Cancer Drug Targets, 2003, 3, 447-455.

Tumor cells respond to growth signals by the activation of protein kinases, altered gene expression and significant modifications in substrate flow and redistribution among biosynthetic pathways. This results in a proliferating phenotype
with altered cellular function. These transformed cells exhibit unique anabolic characteristics, which includes increased and preferential utilization of glucose through the non-oxidative steps of the pentose cycle for nucleic acid synthesis but limited denovo fatty acid synthesis and TCA cycle glucose oxidation. This primarily nonoxidative anabolic profile reflects an undifferentiated highly proliferative aneuploid cell phenotype and serves as a reliable metabolic biomarker to determine cell proliferation rate and the level of cell transformation/differentiation in response to drug treatment. Novel drugs effective in particular cancers exert their anti-proliferative effects by inducing significant reversions of a few specific non-oxidative anabolic pathways. Here we present evidence that cell transformation of various mechanisms is sustained by a unique
disproportional substrate distribution between the two branches of the pentose cycle for nucleic acid synthesis, glycolysis and the TCA cycle for fatty acid synthesis and glucose oxidation. This can be demonstrated by the broad labeling and unique specificity of [1,2-13C2]glucose to trace a large number of metabolites in the metabolome. Stable isotope-based dynamic metabolic profiles (SIDMAP) serve the drug discovery process by providing a powerful new tool that integrates the metabolome into a functional genomics approach to developing new drugs. It can be used in screening kinases and their metabolic targets, which can therefore be more efficiently characterized, speeding up and improving drug testing, approval and labeling processes by saving trial and error type study costs in drug testing.

Navigating the HumanMetabolome for Biomarker Identification and Design of Pharmaceutical Molecules

Irene Kouskoumvekaki and Gianni Panagiotou
Department of Systems Biology, Center for Biological Sequence Analysis, Building 208, Technical University of Denmark, Lyngby, Denmark
Hindawi Publishing Corporation  Journal of Biomedicine and Biotechnology 2011, Article ID 525497, 19 pages
http://dx.doi.org:/10.1155/2011/525497

Metabolomics is a rapidly evolving discipline that involves the systematic study of endogenous small molecules that characterize the metabolic pathways of biological systems. The study of metabolism at a global level has the potential to contribute significantly to biomedical research, clinical medical practice, as well as drug discovery. In this paper, we present the most up-to-date metabolite and metabolic pathway resources, and we summarize the statistical, and machine-learning tools used for the analysis of data from clinical metabolomics.

Through specific applications on cancer, diabetes, neurological and other diseases, we demonstrate how these tools can facilitate diagnosis and identification of potential biomarkers for use within disease diagnosis. Additionally, we
discuss the increasing importance of the integration of metabolomics data in drug discovery. On a case-study based on the Human Metabolome Database (HMDB) and the Chinese Natural Product Database (CNPD), we demonstrate the close relatedness of the two data sets of compounds, and we further illustrate how structural similarity with human metabolites could assist in the design of novel pharmaceuticals and the elucidation of the molecular mechanisms of medicinal plants.

Metabolites are the byproducts of metabolism, which is itself the process of converting food energy to mechanical energy
or heat. Experts believe there are at least 3,000 metabolites that are essential for normal growth and development (primary metabolites) and thousands more unidentified (around 20,000, compared to an estimated 30,000 genes and 100,000 proteins) that are not essential for growth and development (secondary metabolites) but could represent prognostic, diagnostic, and surrogate markers for a disease state and a deeper understanding of mechanisms of disease.

Metabolomics, the study of metabolism at the global level, has the potential to contribute significantly to biomedical
research, and ultimately to clinical medical practice. It is a close counterpart to the genome, the transcriptome and the proteome. Metabolomics, genomics, proteomics, and other “-omics” grew out of the Human Genome Project, a massive research effort that began in the mid-1990s and culminated in 2003 with a complete mapping of all the genes in the human body. When discussing the clinical advantages of metabolomics, scientists point to the “real-world” assessment
of patient physiology that the metabolome provides since it can be regarded as the end-point of the “-omics” cascade. Other functional genomics technologies do not necessarily predict drug effects, toxicological response, or disease states at the phenotype but merely indicate the potential cause for phenotypical response. Metabolomics can bridge this information gap. The identification and measurement of metabolite profile dynamics of host changes provides the closest link to the various phenotypic responses. Thus it is clear that the global mapping of metabolic signatures pre- and postdrug treatment is a promising approach to identify possible functional relationships between medication and medical phenotype.

Human Metabolome Database (HMDB). Focusing on quantitative, analytic, or molecular scale information about
metabolites, the enzymes and transporters associated with them, as well as disease related properties the HMDB represents the most complete bioinformatics and chemoinformatics medical information database. It contains records for
thousands of endogenous metabolites identified by literature surveys (PubMed, OMIM, OMMBID, text books), data
mining (KEGG, Metlin, BioCyc) or experimental analyses performed on urine, blood, and cerebrospinal fluid samples.
The annotation effort is aided by chemical parameter calculators and protein annotation tools originally developed for
DrugBank.

A key feature that distinguishes the HMDB from other metabolic resources is its extensive support for higher level database searching and selecting functions. More than 175 hand-drawn-zoomable, fully hyperlinked human
metabolic pathway maps can be found in HMDB and all these maps are quite specific to human metabolism and
explicitly show the subcellular compartments where specific reactions are known to take place. As an equivalent to
BLAST the HMDB contains a structure similarity search tool for chemical structures and users may sketch or
paste a SMILES string of a query compound into the Chem-Query window. Submitting the query launches a
structure similarity search tool that looks for common substructures from the query compound that match the
HMDB’s metabolite database. The wealth of information and especially the extensive linkage to metabolic diseases
to normal and abnormal metabolite concentration ranges, to mutation/SNP data and to the genes, enzymes, reactions
and pathways associated with many diseases of interest makes the HMDB one the most valuable tool in the hands
of clinical chemists, nutritionists, physicians and medical geneticists.

Metabolomics in Drug Discovery and Polypharmacology Studies

Drug molecules generally act on specific targets at the cellular level, and upon binding to the receptors, they exert
a desirable alteration of the cellular activities, regarded as the pharmaceutical effect. Current drug discovery depends
largely on ransom screening, either high-throughput screening (HTS) in vitro, or virtual screening (VS) in silico. Because
the number of available compounds is huge, several druglikeness filters are proposed to reduce the number of compounds that need to be evaluated. The ability to effectively predict if a chemical compound is “drug-like” or “nondruglike” is, thus, a valuable tool in the design, optimization, and selection of drug candidates for development. Druglikeness is a general descriptor of the potential of a small molecule to become a drug. It is not a unified descriptor
but a global property of a compound processing many specific characteristics such as good solubility, membrane
permeability, half-life, and having a pharmacophore pattern to interact specifically with a target protein. These
characteristics can be reflected as molecular descriptors such as molecular weight, log P, the number of hydrogen bond
donors, the number of hydrogen-bond acceptors, the number of rotatable bonds, the number of rigid bonds, the
number of rings in a molecule, and so forth.

Metabolomics for the Study of Polypharmacology of Natural Compounds

Internationally, there is a growing and sustained interest from both pharmaceutical companies and public in medicine
from natural sources. For the public, natural medicine represent a holistic approach to disease treatment, with
potentially less side effects than conventional medicine. For the pharmaceutical companies, bioactive natural products
constitute attractive drug leads, as they have been optimized in a long-term natural selection process for optimal interaction with biomolecules. To promote the ecological survival of plants, structures of secondary products have evolved to interact with molecular targets affecting the cells, tissues and physiological functions in competing microorganisms,
plants, and animals. In this, respect, some plant secondary products may exert their action by resembling endogenous
metabolites, ligands, hormones, signal transduction molecules, or neurotransmitters and thus have beneficial
effects on humans.

Future Perspectives

Metabolomics, the study of metabolism at the global level, is moving to exciting directions.With the development ofmore
sensitive and advanced instrumentation and computational tools for data interpretation in the physiological context,
metabolomics have the potential to impact our understanding of molecular mechanisms of diseases. A state-of-theart
metabolomics study requires knowledge in many areas and especially at the interface of chemistry, biology, and
computer science. High-quality samples, improvements in automated metabolite identification, complete coverage of
the human metabolome, establishment of spectral databases of metabolites and associated biochemical identities, innovative experimental designs to best address a hypothesis, as well as novel computational tools to handle metabolomics data are critical hurdles that must be overcome to drive the inclusion of metabolomics in all steps of drug discovery and drug development. The examples presented above demonstrated that metabolite profiles reflect both environmental and genetic influences in patients and reveal new links between metabolites and diseases providing needed prognostic,diagnostic, and surrogate biomarkers. The integration of these signatures with other omic technologies is of utmost importance to characterize the entire spectrum of malignant phenotype.

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Summary and Perspectives: Impairments in Pathological States: Endocrine Disorders, Stress Hypermetabolism and Cancer

Summary and Perspectives: Impairments in Pathological States: Endocrine Disorders, Stress Hypermetabolism and Cancer

Author and Curator: Larry H. Bernstein, MD, FCAP

Article ID #160: Summary and Perspectives: Impairments in Pathological States: Endocrine Disorders, Stress Hypermetabolism and Cancer. Published on 11/9/2014

WordCloud Image Produced by Adam Tubman

This summary is the last of a series on the impact of transcriptomics, proteomics, and metabolomics on disease investigation, and the sorting and integration of genomic signatures and metabolic signatures to explain phenotypic relationships in variability and individuality of response to disease expression and how this leads to  pharmaceutical discovery and personalized medicine.  We have unquestionably better tools at our disposal than has ever existed in the history of mankind, and an enormous knowledge-base that has to be accessed.  I shall conclude here these discussions with the powerful contribution to and current knowledge pertaining to biochemistry, metabolism, protein-interactions, signaling, and the application of the -OMICS to diseases and drug discovery at this time.

The Ever-Transcendent Cell

Deriving physiologic first principles By John S. Torday | The Scientist Nov 1, 2014
http://www.the-scientist.com/?articles.view/articleNo/41282/title/The-Ever-Transcendent-Cell/

Both the developmental and phylogenetic histories of an organism describe the evolution of physiology—the complex of metabolic pathways that govern the function of an organism as a whole. The necessity of establishing and maintaining homeostatic mechanisms began at the cellular level, with the very first cells, and homeostasis provides the underlying selection pressure fueling evolution.

While the events leading to the formation of the first functioning cell are debatable, a critical one was certainly the formation of simple lipid-enclosed vesicles, which provided a protected space for the evolution of metabolic pathways. Protocells evolved from a common ancestor that experienced environmental stresses early in the history of cellular development, such as acidic ocean conditions and low atmospheric oxygen levels, which shaped the evolution of metabolism.

The reduction of evolution to cell biology may answer the perennially unresolved question of why organisms return to their unicellular origins during the life cycle.

As primitive protocells evolved to form prokaryotes and, much later, eukaryotes, changes to the cell membrane occurred that were critical to the maintenance of chemiosmosis, the generation of bioenergy through the partitioning of ions. The incorporation of cholesterol into the plasma membrane surrounding primitive eukaryotic cells marked the beginning of their differentiation from prokaryotes. Cholesterol imparted more fluidity to eukaryotic cell membranes, enhancing functionality by increasing motility and endocytosis. Membrane deformability also allowed for increased gas exchange.

Acidification of the oceans by atmospheric carbon dioxide generated high intracellular calcium ion concentrations in primitive aquatic eukaryotes, which had to be lowered to prevent toxic effects, namely the aggregation of nucleotides, proteins, and lipids. The early cells achieved this by the evolution of calcium channels composed of cholesterol embedded within the cell’s plasma membrane, and of internal membranes, such as that of the endoplasmic reticulum, peroxisomes, and other cytoplasmic organelles, which hosted intracellular chemiosmosis and helped regulate calcium.

As eukaryotes thrived, they experienced increasingly competitive pressure for metabolic efficiency. Engulfed bacteria, assimilated as mitochondria, provided more bioenergy. As the evolution of eukaryotic organisms progressed, metabolic cooperation evolved, perhaps to enable competition with biofilm-forming, quorum-sensing prokaryotes. The subsequent appearance of multicellular eukaryotes expressing cellular growth factors and their respective receptors facilitated cell-cell signaling, forming the basis for an explosion of multicellular eukaryote evolution, culminating in the metazoans.

Casting a cellular perspective on evolution highlights the integration of genotype and phenotype. Starting from the protocell membrane, the functional homolog for all complex metazoan organs, it offers a way of experimentally determining the role of genes that fostered evolution based on the ontogeny and phylogeny of cellular processes that can be traced back, in some cases, to our last universal common ancestor.  ….

As eukaryotes thrived, they experienced increasingly competitive pressure for metabolic efficiency. Engulfed bacteria, assimilated as mitochondria, provided more bioenergy. As the evolution of eukaryotic organisms progressed, metabolic cooperation evolved, perhaps to enable competition with biofilm-forming, quorum-sensing prokaryotes. The subsequent appearance of multicellular eukaryotes expressing cellular growth factors and their respective receptors facilitated cell-cell signaling, forming the basis for an explosion of multicellular eukaryote evolution, culminating in the metazoans.

Casting a cellular perspective on evolution highlights the integration of genotype and phenotype. Starting from the protocell membrane, the functional homolog for all complex metazoan organs, it offers a way of experimentally determining the role of genes that fostered evolution based on the ontogeny and phylogeny of cellular processes that can be traced back, in some cases, to our last universal common ancestor.

Given that the unicellular toolkit is complete with all the traits necessary for forming multicellular organisms (Science, 301:361-63, 2003), it is distinctly possible that metazoans are merely permutations of the unicellular body plan. That scenario would clarify a lot of puzzling biology: molecular commonalities between the skin, lung, gut, and brain that affect physiology and pathophysiology exist because the cell membranes of unicellular organisms perform the equivalents of these tissue functions, and the existence of pleiotropy—one gene affecting many phenotypes—may be a consequence of the common unicellular source for all complex biologic traits.  …

The cell-molecular homeostatic model for evolution and stability addresses how the external environment generates homeostasis developmentally at the cellular level. It also determines homeostatic set points in adaptation to the environment through specific effectors, such as growth factors and their receptors, second messengers, inflammatory mediators, crossover mutations, and gene duplications. This is a highly mechanistic, heritable, plastic process that lends itself to understanding evolution at the cellular, tissue, organ, system, and population levels, mediated by physiologically linked mechanisms throughout, without having to invoke random, chance mechanisms to bridge different scales of evolutionary change. In other words, it is an integrated mechanism that can often be traced all the way back to its unicellular origins.

The switch from swim bladder to lung as vertebrates moved from water to land is proof of principle that stress-induced evolution in metazoans can be understood from changes at the cellular level.

http://www.the-scientist.com/Nov2014/TE_21.jpg

A MECHANISTIC BASIS FOR LUNG DEVELOPMENT: Stress from periodic atmospheric hypoxia (1) during vertebrate adaptation to land enhances positive selection of the stretch-regulated parathyroid hormone-related protein (PTHrP) in the pituitary and adrenal glands. In the pituitary (2), PTHrP signaling upregulates the release of adrenocorticotropic hormone (ACTH) (3), which stimulates the release of glucocorticoids (GC) by the adrenal gland (4). In the adrenal gland, PTHrP signaling also stimulates glucocorticoid production of adrenaline (5), which in turn affects the secretion of lung surfactant, the distension of alveoli, and the perfusion of alveolar capillaries (6). PTHrP signaling integrates the inflation and deflation of the alveoli with surfactant production and capillary perfusion.  THE SCIENTIST STAFF

From a cell-cell signaling perspective, two critical duplications in genes coding for cell-surface receptors occurred during this period of water-to-land transition—in the stretch-regulated parathyroid hormone-related protein (PTHrP) receptor gene and the β adrenergic (βA) receptor gene. These gene duplications can be disassembled by following their effects on vertebrate physiology backwards over phylogeny. PTHrP signaling is necessary for traits specifically relevant to land adaptation: calcification of bone, skin barrier formation, and the inflation and distention of lung alveoli. Microvascular shear stress in PTHrP-expressing organs such as bone, skin, kidney, and lung would have favored duplication of the PTHrP receptor, since sheer stress generates radical oxygen species (ROS) known to have this effect and PTHrP is a potent vasodilator, acting as an epistatic balancing selection for this constraint.

Positive selection for PTHrP signaling also evolved in the pituitary and adrenal cortex (see figure on this page), stimulating the secretion of ACTH and corticoids, respectively, in response to the stress of land adaptation. This cascade amplified adrenaline production by the adrenal medulla, since corticoids passing through it enzymatically stimulate adrenaline synthesis. Positive selection for this functional trait may have resulted from hypoxic stress that arose during global episodes of atmospheric hypoxia over geologic time. Since hypoxia is the most potent physiologic stressor, such transient oxygen deficiencies would have been acutely alleviated by increasing adrenaline levels, which would have stimulated alveolar surfactant production, increasing gas exchange by facilitating the distension of the alveoli. Over time, increased alveolar distension would have generated more alveoli by stimulating PTHrP secretion, impelling evolution of the alveolar bed of the lung.

This scenario similarly explains βA receptor gene duplication, since increased density of the βA receptor within the alveolar walls was necessary for relieving another constraint during the evolution of the lung in adaptation to land: the bottleneck created by the existence of a common mechanism for blood pressure control in both the lung alveoli and the systemic blood pressure. The pulmonary vasculature was constrained by its ability to withstand the swings in pressure caused by the systemic perfusion necessary to sustain all the other vital organs. PTHrP is a potent vasodilator, subserving the blood pressure constraint, but eventually the βA receptors evolved to coordinate blood pressure in both the lung and the periphery.

Gut Microbiome Heritability

Analyzing data from a large twin study, researchers have homed in on how host genetics can shape the gut microbiome.
By Tracy Vence | The Scientist Nov 6, 2014

Previous research suggested host genetic variation can influence microbial phenotype, but an analysis of data from a large twin study published in Cell today (November 6) solidifies the connection between human genotype and the composition of the gut microbiome. Studying more than 1,000 fecal samples from 416 monozygotic and dizygotic twin pairs, Cornell University’s Ruth Ley and her colleagues have homed in on one bacterial taxon, the family Christensenellaceae, as the most highly heritable group of microbes in the human gut. The researchers also found that Christensenellaceae—which was first described just two years ago—is central to a network of co-occurring heritable microbes that is associated with lean body mass index (BMI).  …

Of particular interest was the family Christensenellaceae, which was the most heritable taxon among those identified in the team’s analysis of fecal samples obtained from the TwinsUK study population.

While microbiologists had previously detected 16S rRNA sequences belonging to Christensenellaceae in the human microbiome, the family wasn’t named until 2012. “People hadn’t looked into it, partly because it didn’t have a name . . . it sort of flew under the radar,” said Ley.

Ley and her colleagues discovered that Christensenellaceae appears to be the hub in a network of co-occurring heritable taxa, which—among TwinsUK participants—was associated with low BMI. The researchers also found that Christensenellaceae had been found at greater abundance in low-BMI twins in older studies.

To interrogate the effects of Christensenellaceae on host metabolic phenotype, the Ley’s team introduced lean and obese human fecal samples into germ-free mice. They found animals that received lean fecal samples containing more Christensenellaceae showed reduced weight gain compared with their counterparts. And treatment of mice that had obesity-associated microbiomes with one member of the Christensenellaceae family, Christensenella minuta, led to reduced weight gain.   …

Ley and her colleagues are now focusing on the host alleles underlying the heritability of the gut microbiome. “We’re running a genome-wide association analysis to try to find genes—particular variants of genes—that might associate with higher levels of these highly heritable microbiota.  . . . Hopefully that will point us to possible reasons they’re heritable,” she said. “The genes will guide us toward understanding how these relationships are maintained between host genotype and microbiome composition.”

J.K. Goodrich et al., “Human genetics shape the gut microbiome,” Cell,  http://dx.doi.org:/10.1016/j.cell.2014.09.053, 2014.

Light-Operated Drugs

Scientists create a photosensitive pharmaceutical to target a glutamate receptor.
By Ruth Williams | The Scentist Nov 1, 2014
http://www.the-scientist.com/?articles.view/articleNo/41279/title/Light-Operated-Drugs/

light operated drugs MO1

light operated drugs MO1

http://www.the-scientist.com/Nov2014/MO1.jpg

The desire for temporal and spatial control of medications to minimize side effects and maximize benefits has inspired the development of light-controllable drugs, or optopharmacology. Early versions of such drugs have manipulated ion channels or protein-protein interactions, “but never, to my knowledge, G protein–coupled receptors [GPCRs], which are one of the most important pharmacological targets,” says Pau Gorostiza of the Institute for Bioengineering of Catalonia, in Barcelona.

Gorostiza has taken the first step toward filling that gap, creating a photosensitive inhibitor of the metabotropic glutamate 5 (mGlu5) receptor—a GPCR expressed in neurons and implicated in a number of neurological and psychiatric disorders. The new mGlu5 inhibitor—called alloswitch-1—is based on a known mGlu receptor inhibitor, but the simple addition of a light-responsive appendage, as had been done for other photosensitive drugs, wasn’t an option. The binding site on mGlu5 is “extremely tight,” explains Gorostiza, and would not accommodate a differently shaped molecule. Instead, alloswitch-1 has an intrinsic light-responsive element.

In a human cell line, the drug was active under dim light conditions, switched off by exposure to violet light, and switched back on by green light. When Gorostiza’s team administered alloswitch-1 to tadpoles, switching between violet and green light made the animals stop and start swimming, respectively.

The fact that alloswitch-1 is constitutively active and switched off by light is not ideal, says Gorostiza. “If you are thinking of therapy, then in principle you would prefer the opposite,” an “on” switch. Indeed, tweaks are required before alloswitch-1 could be a useful drug or research tool, says Stefan Herlitze, who studies ion channels at Ruhr-Universität Bochum in Germany. But, he adds, “as a proof of principle it is great.” (Nat Chem Biol, http://dx.doi.org:/10.1038/nchembio.1612, 2014)

Enhanced Enhancers

The recent discovery of super-enhancers may offer new drug targets for a range of diseases.
By Eric Olson | The Scientist Nov 1, 2014
http://www.the-scientist.com/?articles.view/articleNo/41281/title/Enhanced-Enhancers/

To understand disease processes, scientists often focus on unraveling how gene expression in disease-associated cells is altered. Increases or decreases in transcription—as dictated by a regulatory stretch of DNA called an enhancer, which serves as a binding site for transcription factors and associated proteins—can produce an aberrant composition of proteins, metabolites, and signaling molecules that drives pathologic states. Identifying the root causes of these changes may lead to new therapeutic approaches for many different diseases.

Although few therapies for human diseases aim to alter gene expression, the outstanding examples—including antiestrogens for hormone-positive breast cancer, antiandrogens for prostate cancer, and PPAR-γ agonists for type 2 diabetes—demonstrate the benefits that can be achieved through targeting gene-control mechanisms.  Now, thanks to recent papers from laboratories at MIT, Harvard, and the National Institutes of Health, researchers have a new, much bigger transcriptional target: large DNA regions known as super-enhancers or stretch-enhancers. Already, work on super-enhancers is providing insights into how gene-expression programs are established and maintained, and how they may go awry in disease.  Such research promises to open new avenues for discovering medicines for diseases where novel approaches are sorely needed.

Super-enhancers cover stretches of DNA that are 10- to 100-fold longer and about 10-fold less abundant in the genome than typical enhancer regions (Cell, 153:307-19, 2013). They also appear to bind a large percentage of the transcriptional machinery compared to typical enhancers, allowing them to better establish and enforce cell-type specific transcriptional programs (Cell, 153:320-34, 2013).

Super-enhancers are closely associated with genes that dictate cell identity, including those for cell-type–specific master regulatory transcription factors. This observation led to the intriguing hypothesis that cells with a pathologic identity, such as cancer cells, have an altered gene expression program driven by the loss, gain, or altered function of super-enhancers.

Sure enough, by mapping the genome-wide location of super-enhancers in several cancer cell lines and from patients’ tumor cells, we and others have demonstrated that genes located near super-enhancers are involved in processes that underlie tumorigenesis, such as cell proliferation, signaling, and apoptosis.

Super-enhancers cover stretches of DNA that are 10- to 100-fold longer and about 10-fold less abundant in the genome than typical enhancer regions.

Genome-wide association studies (GWAS) have found that disease- and trait-associated genetic variants often occur in greater numbers in super-enhancers (compared to typical enhancers) in cell types involved in the disease or trait of interest (Cell, 155:934-47, 2013). For example, an enrichment of fasting glucose–associated single nucleotide polymorphisms (SNPs) was found in the stretch-enhancers of pancreatic islet cells (PNAS, 110:17921-26, 2013). Given that some 90 percent of reported disease-associated SNPs are located in noncoding regions, super-enhancer maps may be extremely valuable in assigning functional significance to GWAS variants and identifying target pathways.

Because only 1 to 2 percent of active genes are physically linked to a super-enhancer, mapping the locations of super-enhancers can be used to pinpoint the small number of genes that may drive the biology of that cell. Differential super-enhancer maps that compare normal cells to diseased cells can be used to unravel the gene-control circuitry and identify new molecular targets, in much the same way that somatic mutations in tumor cells can point to oncogenic drivers in cancer. This approach is especially attractive in diseases for which an incomplete understanding of the pathogenic mechanisms has been a barrier to discovering effective new therapies.

Another therapeutic approach could be to disrupt the formation or function of super-enhancers by interfering with their associated protein components. This strategy could make it possible to downregulate multiple disease-associated genes through a single molecular intervention. A group of Boston-area researchers recently published support for this concept when they described inhibited expression of cancer-specific genes, leading to a decrease in cancer cell growth, by using a small molecule inhibitor to knock down a super-enhancer component called BRD4 (Cancer Cell, 24:777-90, 2013).  More recently, another group showed that expression of the RUNX1 transcription factor, involved in a form of T-cell leukemia, can be diminished by treating cells with an inhibitor of a transcriptional kinase that is present at the RUNX1 super-enhancer (Nature, 511:616-20, 2014).

Fungal effector Ecp6 outcompetes host immune receptor for chitin binding through intrachain LysM dimerization 
Andrea Sánchez-Vallet, et al.   eLife 2013;2:e00790 http://elifesciences.org/content/2/e00790#sthash.LnqVMJ9p.dpuf

LysM effector

LysM effector

http://img.scoop.it/ZniCRKQSvJOG18fHbb4p0Tl72eJkfbmt4t8yenImKBVvK0kTmF0xjctABnaLJIm9

While host immune receptors

  • detect pathogen-associated molecular patterns to activate immunity,
  • pathogens attempt to deregulate host immunity through secreted effectors.

Fungi employ LysM effectors to prevent

  • recognition of cell wall-derived chitin by host immune receptors

Structural analysis of the LysM effector Ecp6 of

  • the fungal tomato pathogen Cladosporium fulvum reveals
  • a novel mechanism for chitin binding,
  • mediated by intrachain LysM dimerization,

leading to a chitin-binding groove that is deeply buried in the effector protein.

This composite binding site involves

  • two of the three LysMs of Ecp6 and
  • mediates chitin binding with ultra-high (pM) affinity.

The remaining singular LysM domain of Ecp6 binds chitin with

  • low micromolar affinity but can nevertheless still perturb chitin-triggered immunity.

Conceivably, the perturbation by this LysM domain is not established through chitin sequestration but possibly through interference with the host immune receptor complex.

Mutated Genes in Schizophrenia Map to Brain Networks
From www.nih.gov –  Sep 3, 2013

Previous studies have shown that many people with schizophrenia have de novo, or new, genetic mutations. These misspellings in a gene’s DNA sequence

  • occur spontaneously and so aren’t shared by their close relatives.

Dr. Mary-Claire King of the University of Washington in Seattle and colleagues set out to

  • identify spontaneous genetic mutations in people with schizophrenia and
  • to assess where and when in the brain these misspelled genes are turned on, or expressed.

The study was funded in part by NIH’s National Institute of Mental Health (NIMH). The results were published in the August 1, 2013, issue of Cell.

The researchers sequenced the exomes (protein-coding DNA regions) of 399 people—105 with schizophrenia plus their unaffected parents and siblings. Gene variations
that were found in a person with schizophrenia but not in either parent were considered spontaneous.

The likelihood of having a spontaneous mutation was associated with

  • the age of the father in both affected and unaffected siblings.

Significantly more mutations were found in people

  • whose fathers were 33-45 years at the time of conception compared to 19-28 years.

Among people with schizophrenia, the scientists identified

  • 54 genes with spontaneous mutations
  • predicted to cause damage to the function of the protein they encode.

The researchers used newly available database resources that show

  • where in the brain and when during development genes are expressed.

The genes form an interconnected expression network with many more connections than

  • that of the genes with spontaneous damaging mutations in unaffected siblings.

The spontaneously mutated genes in people with schizophrenia

  • were expressed in the prefrontal cortex, a region in the front of the brain.

The genes are known to be involved in important pathways in brain development. Fifty of these genes were active

  • mainly during the period of fetal development.

“Processes critical for the brain’s development can be revealed by the mutations that disrupt them,” King says. “Mutations can lead to loss of integrity of a whole pathway,
not just of a single gene.”

These findings support the concept that schizophrenia may result, in part, from

  • disruptions in development in the prefrontal cortex during fetal development.

James E. Darnell’s “Reflections”

A brief history of the discovery of RNA and its role in transcription — peppered with career advice
By Joseph P. Tiano

James Darnell begins his Journal of Biological Chemistry “Reflections” article by saying, “graduate students these days

  • have to swim in a sea virtually turgid with the daily avalanche of new information and
  • may be momentarily too overwhelmed to listen to the aging.

I firmly believe how we learned what we know can provide useful guidance for how and what a newcomer will learn.” Considering his remarkable discoveries in

  • RNA processing and eukaryotic transcriptional regulation

spanning 60 years of research, Darnell’s advice should be cherished. In his second year at medical school at Washington University School of Medicine in St. Louis, while
studying streptococcal disease in Robert J. Glaser’s laboratory, Darnell realized he “loved doing the experiments” and had his first “career advancement event.”
He and technician Barbara Pesch discovered that in vivo penicillin treatment killed streptococci only in the exponential growth phase and not in the stationary phase. These
results were published in the Journal of Clinical Investigation and earned Darnell an interview with Harry Eagle at the National Institutes of Health.

Darnell arrived at the NIH in 1956, shortly after Eagle  shifted his research interest to developing his minimal essential cell culture medium, still used. Eagle, then studying cell metabolism, suggested that Darnell take up a side project on poliovirus replication in mammalian cells in collaboration with Robert I. DeMars. DeMars’ Ph.D.
adviser was also James  Watson’s mentor, so Darnell met Watson, who invited him to give a talk at Harvard University, which led to an assistant professor position
at the MIT under Salvador Luria. A take-home message is to embrace side projects, because you never know where they may lead: this project helped to shape
his career.

Darnell arrived in Boston in 1961. Following the discovery of DNA’s structure in 1953, the world of molecular biology was turning to RNA in an effort to understand how
proteins are made. Darnell’s background in virology (it was discovered in 1960 that viruses used RNA to replicate) was ideal for the aim of his first independent lab:
exploring mRNA in animal cells grown in culture. While at MIT, he developed a new technique for purifying RNA along with making other observations

  • suggesting that nonribosomal cytoplasmic RNA may be involved in protein synthesis.

When Darnell moved to Albert Einstein College of Medicine for full professorship in 1964,  it was hypothesized that heterogenous nuclear RNA was a precursor to mRNA.
At Einstein, Darnell discovered RNA processing of pre-tRNAs and demonstrated for the first time

  • that a specific nuclear RNA could represent a possible specific mRNA precursor.

In 1967 Darnell took a position at Columbia University, and it was there that he discovered (simultaneously with two other labs) that

  • mRNA contained a polyadenosine tail.

The three groups all published their results together in the Proceedings of the National Academy of Sciences in 1971. Shortly afterward, Darnell made his final career move
four short miles down the street to Rockefeller University in 1974.

Over the next 35-plus years at Rockefeller, Darnell never strayed from his original research question: How do mammalian cells make and control the making of different
mRNAs? His work was instrumental in the collaborative discovery of

  • splicing in the late 1970s and
  • in identifying and cloning many transcriptional activators.

Perhaps his greatest contribution during this time, with the help of Ernest Knight, was

  • the discovery and cloning of the signal transducers and activators of transcription (STAT) proteins.

And with George Stark, Andy Wilks and John Krowlewski, he described

  • cytokine signaling via the JAK-STAT pathway.

Darnell closes his “Reflections” with perhaps his best advice: Do not get too wrapped up in your own work, because “we are all needed and we are all in this together.”

Darnell Reflections - James_Darnell

Darnell Reflections – James_Darnell

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Recent findings on presenilins and signal peptide peptidase

By Dinu-Valantin Bălănescu

γ-secretase and SPP

γ-secretase and SPP

Fig. 1 from the minireview shows a schematic depiction of γ-secretase and SPP

http://www.asbmb.org/assets/0/366/418/428/85528/85529/85530/c2de032a-daad-41e5-ba19-87a17bd26362.png

GxGD proteases are a family of intramembranous enzymes capable of hydrolyzing

  • the transmembrane domain of some integral membrane proteins.

The GxGD family is one of the three families of

  • intramembrane-cleaving proteases discovered so far (along with the rhomboid and site-2 protease) and
  • includes the γ-secretase and the signal peptide peptidase.

Although only recently discovered, a number of functions in human pathology and in numerous other biological processes

  • have been attributed to γ-secretase and SPP.

Taisuke Tomita and Takeshi Iwatsubo of the University of Tokyo highlighted the latest findings on the structure and function of γ-secretase and SPP
in a recent minireview in The Journal of Biological Chemistry.

  • γ-secretase is involved in cleaving the amyloid-β precursor protein, thus producing amyloid-β peptide,

the main component of senile plaques in Alzheimer’s disease patients’ brains. The complete structure of mammalian γ-secretase is not yet known; however,
Tomita and Iwatsubo note that biochemical analyses have revealed it to be a multisubunit protein complex.

  • Its catalytic subunit is presenilin, an aspartyl protease.

In vitro and in vivo functional and chemical biology analyses have revealed that

  • presenilin is a modulator and mandatory component of the γ-secretase–mediated cleavage of APP.

Genetic studies have identified three other components required for γ-secretase activity:

  1. nicastrin,
  2. anterior pharynx defective 1 and
  3. presenilin enhancer 2.

By coexpression of presenilin with the other three components, the authors managed to

  • reconstitute γ-secretase activity.

Tomita and Iwatsubo determined using the substituted cysteine accessibility method and by topological analyses, that

  • the catalytic aspartates are located at the center of the nine transmembrane domains of presenilin,
  • by revealing the exact location of the enzyme’s catalytic site.

The minireview also describes in detail the formerly enigmatic mechanism of γ-secretase mediated cleavage.

SPP, an enzyme that cleaves remnant signal peptides in the membrane

  • during the biogenesis of membrane proteins and
  • signal peptides from major histocompatibility complex type I,
  • also is involved in the maturation of proteins of the hepatitis C virus and GB virus B.

Bioinformatics methods have revealed in fruit flies and mammals four SPP-like proteins,

  • two of which are involved in immunological processes.

By using γ-secretase inhibitors and modulators, it has been confirmed

  • that SPP shares a similar GxGD active site and proteolytic activity with γ-secretase.

Upon purification of the human SPP protein with the baculovirus/Sf9 cell system,

  • single-particle analysis revealed further structural and functional details.

HLA targeting efficiency correlates with human T-cell response magnitude and with mortality from influenza A infection

From www.pnas.org –  Sep 3, 2013 4:24 PM

Experimental and computational evidence suggests that

  • HLAs preferentially bind conserved regions of viral proteins, a concept we term “targeting efficiency,” and that
  • this preference may provide improved clearance of infection in several viral systems.

To test this hypothesis, T-cell responses to A/H1N1 (2009) were measured from peripheral blood mononuclear cells obtained from a household cohort study
performed during the 2009–2010 influenza season. We found that HLA targeting efficiency scores significantly correlated with

  • IFN-γ enzyme-linked immunosorbent spot responses (P = 0.042, multiple regression).

A further population-based analysis found that the carriage frequencies of the alleles with the lowest targeting efficiencies, A*24,

  • were associated with pH1N1 mortality (r = 0.37, P = 0.031) and
  • are common in certain indigenous populations in which increased pH1N1 morbidity has been reported.

HLA efficiency scores and HLA use are associated with CD8 T-cell magnitude in humans after influenza infection.
The computational tools used in this study may be useful predictors of potential morbidity and

  • identify immunologic differences of new variant influenza strains
  • more accurately than evolutionary sequence comparisons.

Population-based studies of the relative frequency of these alleles in severe vs. mild influenza cases

  • might advance clinical practices for severe H1N1 infections among genetically susceptible populations.

Metabolomics in drug target discovery

J D Rabinowitz et al.

Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ.
Cold Spring Harbor Symposia on Quantitative Biology 11/2011; 76:235-46.
http://dx.doi.org:/10.1101/sqb.2011.76.010694 

Most diseases result in metabolic changes. In many cases, these changes play a causative role in disease progression. By identifying pathological metabolic changes,

  • metabolomics can point to potential new sites for therapeutic intervention.

Particularly promising enzymatic targets are those that

  • carry increased flux in the disease state.

Definitive assessment of flux requires the use of isotope tracers. Here we present techniques for

  • finding new drug targets using metabolomics and isotope tracers.

The utility of these methods is exemplified in the study of three different viral pathogens. For influenza A and herpes simplex virus,

  • metabolomic analysis of infected versus mock-infected cells revealed
  • dramatic concentration changes around the current antiviral target enzymes.

Similar analysis of human-cytomegalovirus-infected cells, however, found the greatest changes

  • in a region of metabolism unrelated to the current antiviral target.

Instead, it pointed to the tricarboxylic acid (TCA) cycle and

  • its efflux to feed fatty acid biosynthesis as a potential preferred target.

Isotope tracer studies revealed that cytomegalovirus greatly increases flux through

  • the key fatty acid metabolic enzyme acetyl-coenzyme A carboxylase.
  • Inhibition of this enzyme blocks human cytomegalovirus replication.

Examples where metabolomics has contributed to identification of anticancer drug targets are also discussed. Eventual proof of the value of

  • metabolomics as a drug target discovery strategy will be
  • successful clinical development of therapeutics hitting these new targets.

 Related References

Use of metabolic pathway flux information in targeted cancer drug design. Drug Discovery Today: Therapeutic Strategies 1:435-443, 2004.

Detection of resistance to imatinib by metabolic profiling: clinical and drug development implications. Am J Pharmacogenomics. 2005;5(5):293-302. Review. PMID: 16196499

Medicinal chemistry, metabolic profiling and drug target discovery: a role for metabolic profiling in reverse pharmacology and chemical genetics.
Mini Rev Med Chem.  2005 Jan;5(1):13-20. Review. PMID: 15638788 [PubMed – indexed for MEDLINE] Related citations

Development of Tracer-Based Metabolomics and its Implications for the Pharmaceutical Industry. Int J Pharm Med 2007; 21 (3): 217-224.

Use of metabolic pathway flux information in anticancer drug design. Ernst Schering Found Symp Proc. 2007;(4):189-203. Review. PMID: 18811058

Pharmacological targeting of glucagon and glucagon-like peptide 1 receptors has different effects on energy state and glucose homeostasis in diet-induced obese mice. J Pharmacol Exp Ther. 2011 Jul;338(1):70-81. http://dx.doi.org:/10.1124/jpet.111.179986. PMID: 21471191

Single valproic acid treatment inhibits glycogen and RNA ribose turnover while disrupting glucose-derived cholesterol synthesis in liver as revealed by the
[U-C(6)]-d-glucose tracer in mice. Metabolomics. 2009 Sep;5(3):336-345. PMID: 19718458

Metabolic Pathways as Targets for Drug Screening, Metabolomics, Dr Ute Roessner (Ed.), ISBN: 978-953-51-0046-1, InTech, Available from: http://www.intechopen.com/books/metabolomics/metabolic-pathways-as-targets-for-drug-screening

Iron regulates glucose homeostasis in liver and muscle via AMP-activated protein kinase in mice. FASEB J. 2013 Jul;27(7):2845-54.
http://dx.doi.org:/10.1096/fj.12-216929. PMID: 23515442

Metabolomics and systems pharmacology: why and how to model the human metabolic network for drug discovery

Drug Discov. Today 19 (2014), 171–182     http://dx.doi.org:/10.1016/j.drudis.2013.07.014

Highlights

  • We now have metabolic network models; the metabolome is represented by their nodes.
  • Metabolite levels are sensitive to changes in enzyme activities.
  • Drugs hitchhike on metabolite transporters to get into and out of cells.
  • The consensus network Recon2 represents the present state of the art, and has predictive power.
  • Constraint-based modelling relates network structure to metabolic fluxes.

Metabolism represents the ‘sharp end’ of systems biology, because changes in metabolite concentrations are

  • necessarily amplified relative to changes in the transcriptome, proteome and enzyme activities, which can be modulated by drugs.

To understand such behaviour, we therefore need (and increasingly have) reliable consensus (community) models of

  • the human metabolic network that include the important transporters.

Small molecule ‘drug’ transporters are in fact metabolite transporters, because

  • drugs bear structural similarities to metabolites known from the network reconstructions and
  • from measurements of the metabolome.

Recon2 represents the present state-of-the-art human metabolic network reconstruction; it can predict inter alia:

(i) the effects of inborn errors of metabolism;

(ii) which metabolites are exometabolites, and

(iii) how metabolism varies between tissues and cellular compartments.

However, even these qualitative network models are not yet complete. As our understanding improves

  • so do we recognise more clearly the need for a systems (poly)pharmacology.

Introduction – a systems biology approach to drug discovery

It is clearly not news that the productivity of the pharmaceutical industry has declined significantly during recent years

  • following an ‘inverse Moore’s Law’, Eroom’s Law, or
  • that many commentators, consider that the main cause of this is
  • because of an excessive focus on individual molecular target discovery rather than a more sensible strategy
  • based on a systems-level approach (Fig. 1).
drug discovery science

drug discovery science

Figure 1.

The change in drug discovery strategy from ‘classical’ function-first approaches (in which the assay of drug function was at the tissue or organism level),
with mechanistic studies potentially coming later, to more-recent target-based approaches where initial assays usually involve assessing the interactions
of drugs with specified (and often cloned, recombinant) proteins in vitro. In the latter cases, effects in vivo are assessed later, with concomitantly high levels of attrition.

Arguably the two chief hallmarks of the systems biology approach are:

(i) that we seek to make mathematical models of our systems iteratively or in parallel with well-designed ‘wet’ experiments, and
(ii) that we do not necessarily start with a hypothesis but measure as many things as possible (the ’omes) and

  • let the data tell us the hypothesis that best fits and describes them.

Although metabolism was once seen as something of a Cinderella subject,

  • there are fundamental reasons to do with the organisation of biochemical networks as
  • to why the metabol(om)ic level – now in fact seen as the ‘apogee’ of the ’omics trilogy –
  •  is indeed likely to be far more discriminating than are
  • changes in the transcriptome or proteome.

The next two subsections deal with these points and Fig. 2 summarises the paper in the form of a Mind Map.

metabolomics and systems pharmacology

metabolomics and systems pharmacology

http://ars.els-cdn.com/content/image/1-s2.0-S1359644613002481-gr2.jpg

Metabolic Disease Drug Discovery— “Hitting the Target” Is Easier Said Than Done

David E. Moller, et al.   http://dx.doi.org:/10.1016/j.cmet.2011.10.012

Despite the advent of new drug classes, the global epidemic of cardiometabolic disease has not abated. Continuing

  • unmet medical needs remain a major driver for new research.

Drug discovery approaches in this field have mirrored industry trends, leading to a recent

  • increase in the number of molecules entering development.

However, worrisome trends and newer hurdles are also apparent. The history of two newer drug classes—

  1. glucagon-like peptide-1 receptor agonists and
  2. dipeptidyl peptidase-4 inhibitors—

illustrates both progress and challenges. Future success requires that researchers learn from these experiences and

  • continue to explore and apply new technology platforms and research paradigms.

The global epidemic of obesity and diabetes continues to progress relentlessly. The International Diabetes Federation predicts an even greater diabetes burden (>430 million people afflicted) by 2030, which will disproportionately affect developing nations (International Diabetes Federation, 2011). Yet

  • existing drug classes for diabetes, obesity, and comorbid cardiovascular (CV) conditions have substantial limitations.

Currently available prescription drugs for treatment of hyperglycemia in patients with type 2 diabetes (Table 1) have notable shortcomings. In general,

Therefore, clinicians must often use combination therapy, adding additional agents over time. Ultimately many patients will need to use insulin—a therapeutic class first introduced in 1922. Most existing agents also have

  • issues around safety and tolerability as well as dosing convenience (which can impact patient compliance).

Pharmacometabolomics, also known as pharmacometabonomics, is a field which stems from metabolomics,

  • the quantification and analysis of metabolites produced by the body.

It refers to the direct measurement of metabolites in an individual’s bodily fluids, in order to

  • predict or evaluate the metabolism of pharmaceutical compounds, and
  • to better understand the pharmacokinetic profile of a drug.

Alternatively, pharmacometabolomics can be applied to measure metabolite levels

  • following the administration of a pharmaceutical compound, in order to
  • monitor the effects of the compound on certain metabolic pathways(pharmacodynamics).

This provides detailed mapping of drug effects on metabolism and

  • the pathways that are implicated in mechanism of variation of response to treatment.

In addition, the metabolic profile of an individual at baseline (metabotype) provides information about

  • how individuals respond to treatment and highlights heterogeneity within a disease state.

All three approaches require the quantification of metabolites found

relationship between -OMICS

relationship between -OMICS

http://upload.wikimedia.org/wikipedia/commons/thumb/e/eb/OMICS.png/350px-OMICS.png

Pharmacometabolomics is thought to provide information that

Looking at the characteristics of an individual down through these different levels of detail, there is an

  • increasingly more accurate prediction of a person’s ability to respond to a pharmaceutical compound.
  1. the genome, made up of 25 000 genes, can indicate possible errors in drug metabolism;
  2. the transcriptome, made up of 85,000 transcripts, can provide information about which genes important in metabolism are being actively transcribed;
  3. and the proteome, >10,000,000 members, depicts which proteins are active in the body to carry out these functions.

Pharmacometabolomics complements the omics with

  • direct measurement of the products of all of these reactions, but with perhaps a relatively
  • smaller number of members: that was initially projected to be approximately 2200 metabolites,

but could be a larger number when gut derived metabolites and xenobiotics are added to the list. Overall, the goal of pharmacometabolomics is

  • to more closely predict or assess the response of an individual to a pharmaceutical compound,
  • permitting continued treatment with the right drug or dosage
  • depending on the variations in their metabolism and ability to respond to treatment.

Pharmacometabolomic analyses, through the use of a metabolomics approach,

  • can provide a comprehensive and detailed metabolic profile or “metabolic fingerprint” for an individual patient.

Such metabolic profiles can provide a complete overview of individual metabolite or pathway alterations,

This approach can then be applied to the prediction of response to a pharmaceutical compound

  • by patients with a particular metabolic profile.

Pharmacometabolomic analyses of drug response are

Pharmacogenetics focuses on the identification of genetic variations (e.g. single-nucleotide polymorphisms)

  • within patients that may contribute to altered drug responses and overall outcome of a certain treatment.

The results of pharmacometabolomics analyses can act to “inform” or “direct”

  • pharmacogenetic analyses by correlating aberrant metabolite concentrations or metabolic pathways to potential alterations at the genetic level.

This concept has been established with two seminal publications from studies of antidepressants serotonin reuptake inhibitors

  • where metabolic signatures were able to define a pathway implicated in response to the antidepressant and
  • that lead to identification of genetic variants within a key gene
  • within the highlighted pathway as being implicated in variation in response.

These genetic variants were not identified through genetic analysis alone and hence

  • illustrated how metabolomics can guide and inform genetic data.

en.wikipedia.org/wiki/Pharmacometabolomics

Benznidazole Biotransformation and Multiple Targets in Trypanosoma cruzi Revealed by Metabolomics

Andrea Trochine, Darren J. Creek, Paula Faral-Tello, Michael P. Barrett, Carlos Robello
Published: May 22, 2014   http://dx.doi.org:/10.1371/journal.pntd.0002844

The first line treatment for Chagas disease, a neglected tropical disease caused by the protozoan parasite Trypanosoma cruzi,

  • involves administration of benznidazole (Bzn).

Bzn is a 2-nitroimidazole pro-drug which requires nitroreduction to become active. We used a

  • non-targeted MS-based metabolomics approach to study the metabolic response of T. cruzi to Bzn.

Parasites treated with Bzn were minimally altered compared to untreated trypanosomes, although the redox active thiols

  1. trypanothione,
  2. homotrypanothione and
  3. cysteine

were significantly diminished in abundance post-treatment. In addition, multiple Bzn-derived metabolites were detected after treatment.

These metabolites included reduction products, fragments and covalent adducts of reduced Bzn

  • linked to each of the major low molecular weight thiols:
  1. trypanothione,
  2. glutathione,
  3. g-glutamylcysteine,
  4. glutathionylspermidine,
  5. cysteine and
  6. ovothiol A.

Bzn products known to be generated in vitro by the unusual trypanosomal nitroreductase, TcNTRI,

  • were found within the parasites,
  • but low molecular weight adducts of glyoxal, a proposed toxic end-product of NTRI Bzn metabolism, were not detected.

Our data is indicative of a major role of the

  • thiol binding capacity of Bzn reduction products
  • in the mechanism of Bzn toxicity against T. cruzi.

 

 

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Summary to Metabolomics

Summary to Metabolomics

Author and Curator: Larry H. Bernstein, MD, FCAP 

This concludes a long step-by-step journey into rediscovering biological processes from the genome as a framework to the remodeled and reconstituted cell through a number of posttranscription and posttranslation processes that modify the proteome and determine the metabolome.  The remodeling process continues over a lifetime. The process requires a balance between nutrient intake, energy utilization for work in the lean body mass, energy reserves, endocrine, paracrine and autocrine mechanisms, and autophagy.  It is true when we look at this in its full scope – What a creature is man?

http://masspec.scripps.edu/metabo_science/recommended_readings.php
 Recommended Readings and Historical Perspectives

Metabolomics is the scientific study of chemical processes involving metabolites. Specifically, metabolomics is the “systematic study of the unique chemical fingerprints that specific cellular processes leave behind”, the study of their small-molecule metabolite profiles.[1] The metabolome represents the collection of all metabolites in a biological cell, tissue, organ or organism, which are the end products of cellular processes.[2] mRNA gene expression data and proteomic analyses reveal the set of gene products being produced in the cell, data that represents one aspect of cellular function. Conversely, metabolic profiling can give an instantaneous snapshot of the physiology of that cell. One of the challenges of systems biology and functional genomics is to integrate proteomic, transcriptomic, and metabolomic information to provide a better understanding of cellular biology.

The term “metabolic profile” was introduced by Horning, et al. in 1971 after they demonstrated that gas chromatography-mass spectrometry (GC-MS) could be used to measure compounds present in human urine and tissue extracts. The Horning group, along with that of Linus Pauling and Arthur B. Robinson led the development of GC-MS methods to monitor the metabolites present in urine through the 1970s.

Concurrently, NMR spectroscopy, which was discovered in the 1940s, was also undergoing rapid advances. In 1974, Seeley et al. demonstrated the utility of using NMR to detect metabolites in unmodified biological samples.This first study on muscle highlighted the value of NMR in that it was determined that 90% of cellular ATP is complexed with magnesium. As sensitivity has improved with the evolution of higher magnetic field strengths and magic angle spinning, NMR continues to be a leading analytical tool to investigate metabolism. Efforts to utilize NMR for metabolomics have been influenced by the laboratory of Dr. Jeremy Nicholson at Birkbeck College, University of London and later at Imperial College London. In 1984, Nicholson showed 1H NMR spectroscopy could potentially be used to diagnose diabetes mellitus, and later pioneered the application of pattern recognition methods to NMR spectroscopic data.

In 2005, the first metabolomics web database, METLIN, for characterizing human metabolites was developed in the Siuzdak laboratory at The Scripps Research Institute and contained over 10,000 metabolites and tandem mass spectral data. As of September 2012, METLIN contains over 60,000 metabolites as well as the largest repository of tandem mass spectrometry data in metabolomics.

On 23 January 2007, the Human Metabolome Project, led by Dr. David Wishart of the University of Alberta, Canada, completed the first draft of the human metabolome, consisting of a database of approximately 2500 metabolites, 1200 drugs and 3500 food components. Similar projects have been underway in several plant species, most notably Medicago truncatula and Arabidopsis thaliana for several years.

As late as mid-2010, metabolomics was still considered an “emerging field”. Further, it was noted that further progress in the field depended in large part, through addressing otherwise “irresolvable technical challenges”, by technical evolution of mass spectrometry instrumentation.

Metabolome refers to the complete set of small-molecule metabolites (such as metabolic intermediates, hormones and other signaling molecules, and secondary metabolites) to be found within a biological sample, such as a single organism. The word was coined in analogy with transcriptomics and proteomics; like the transcriptome and the proteome, the metabolome is dynamic, changing from second to second. Although the metabolome can be defined readily enough, it is not currently possible to analyse the entire range of metabolites by a single analytical method. The first metabolite database(called METLIN) for searching m/z values from mass spectrometry data was developed by scientists at The Scripps Research Institute in 2005. In January 2007, scientists at the University of Alberta and the University of Calgary completed the first draft of the human metabolome. They catalogued approximately 2500 metabolites, 1200 drugs and 3500 food components that can be found in the human body, as reported in the literature. This information, available at the Human Metabolome Database (www.hmdb.ca) and based on analysis of information available in the current scientific literature, is far from complete.

Each type of cell and tissue has a unique metabolic ‘fingerprint’ that can elucidate organ or tissue-specific information, while the study of biofluids can give more generalized though less specialized information. Commonly used biofluids are urine and plasma, as they can be obtained non-invasively or relatively non-invasively, respectively. The ease of collection facilitates high temporal resolution, and because they are always at dynamic equilibrium with the body, they can describe the host as a whole.

Metabolites are the intermediates and products of metabolism. Within the context of metabolomics, a metabolite is usually defined as any molecule less than 1 kDa in size.
A primary metabolite is directly involved in the normal growth, development, and reproduction. A secondary metabolite is not directly involved in those processes.  By contrast, in human-based metabolomics, it is more common to describe metabolites as being either endogenous (produced by the host organism) or exogenous. Metabolites of foreign substances such as drugs are termed xenometabolites. The metabolome forms a large network of metabolic reactions, where outputs from one enzymatic chemical reaction are inputs to other chemical reactions.

Metabonomics is defined as “the quantitative measurement of the dynamic multiparametric metabolic response of living systems to pathophysiological stimuli or genetic modification”. The word origin is from the Greek μεταβολή meaning change and nomos meaning a rule set or set of laws. This approach was pioneered by Jeremy Nicholson at Imperial College London and has been used in toxicology, disease diagnosis and a number of other fields. Historically, the metabonomics approach was one of the first methods to apply the scope of systems biology to studies of metabolism.

There is a growing consensus that ‘metabolomics’ places a greater emphasis on metabolic profiling at a cellular or organ level and is primarily concerned with normal endogenous metabolism. ‘Metabonomics’ extends metabolic profiling to include information about perturbations of metabolism caused by environmental factors (including diet and toxins), disease processes, and the involvement of extragenomic influences, such as gut microflora. This is not a trivial difference; metabolomic studies should, by definition, exclude metabolic contributions from extragenomic sources, because these are external to the system being studied.

Toxicity assessment/toxicology. Metabolic profiling (especially of urine or blood plasma samples) detects the physiological changes caused by toxic insult of a chemical (or mixture of chemicals).

Functional genomics. Metabolomics can be an excellent tool for determining the phenotype caused by a genetic manipulation, such as gene deletion or insertion. Sometimes this can be a sufficient goal in itself—for instance, to detect any phenotypic changes in a genetically-modified plant intended for human or animal consumption. More exciting is the prospect of predicting the function of unknown genes by comparison with the metabolic perturbations caused by deletion/insertion of known genes.

Nutrigenomics is a generalised term which links genomics, transcriptomics, proteomics and metabolomics to human nutrition. In general a metabolome in a given body fluid is influenced by endogenous factors such as age, sex, body composition and genetics as well as underlying pathologies. The large bowel microflora are also a very significant potential confounder of metabolic profiles and could be classified as either an endogenous or exogenous factor. The main exogenous factors are diet and drugs. Diet can then be broken down to nutrients and non- nutrients.

http://en.wikipedia.org/wiki/Metabolomics

Jose Eduardo des Salles Roselino

The problem with genomics was it was set as explanation for everything. In fact, when something is genetic in nature the genomic reasoning works fine. However, this means whenever an inborn error is found and only in this case the genomic knowledge afterwards may indicate what is wrong and not the completely way to put biology upside down by reading everything in the DNA genetic as well as non-genetic problems.

Coordination of the transcriptome and metabolome by the circadian clock PNAS 2012

Coordination of the transcriptome and metabolome by the circadian clock PNAS 2012

analysis of metabolomic data and differential metabolic regulation for fetal lungs, and maternal blood plasma

conformational changes leading to substrate efflux.img

conformational changes leading to substrate efflux.img

The cellular response is defined by a network of chemogenomic response signatures.

The cellular response is defined by a network of chemogenomic response signatures.

Dynamic Construct of the –Omics

Dynamic Construct of the –Omics

 genome cartoon

genome cartoon

central dogma phenotype

central dogma phenotype

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Exalenz Bioscience: Parameters in the Patient’s Breath vs HVPG (Hepatic Venous Pressure Gradient) for Diagnosis of Clinically Significant Portal Hypertension (CSPH)

Reporter: Aviva Lev-Ari, PhD, RN

 

World’s First Breath-Test for Portal Hypertension

Tue, 10/21/2014 – 12:43pm
Exalenz Bioscience
SOURCE

Portal hypertension is the most common complication of cirrhosis, accounting for significant morbidity and mortality

Exalenz Bioscience announced the start of a pivotal study investigating the potential of its BreathID test as a non-invasive tool to diagnose Clinically Significant Portal Hypertension (CSPH), the most common complication of cirrhosis that accounts for significant morbidity and mortality in patients with advanced liver disease. The multinational study will compare the patient-friendly BreathID test to Hepatic Venous Pressure Gradient (HVPG).

During the 200-patient first stage of the study, leading medical centers in Europe and the United States will recruit patients with chronic liver disease. Data collected during this stage will be used to build the index algorithm to compare the BreathID test with HVPG. During the second stage of the study, expected to start in 2016, investigators will verify the algorithm.

Following completion of the pivotal study, Exalenz plans to submit data to the U.S. Food and Drug Administration (FDA) for PMA approval.

Prof. J. Bosch, Hospital Clinic, University of Barcelona, Spain, a study investigator and world leader in diagnosing and treating portal hypertension, said “I am very impressed with the potential of this unique technology by Exalenz Bioscience that is based on measuring different parameters in the patient’s breath. This technology can definitely be a breakthrough in the non-invasive detection of liver diseases.” Hepatic portal vein hypertension is currently diagnosed by measuring HVPG (Hepatic Venous Pressure Gradient), an invasive and expensive test that requires local anesthesia and the use of contrast material that may harm the kidneys, and exposes the patient to radiation. In addition, the test requires a high degree of skill, time and resources that are not available in most medical centers.

Exalenz believes that the BreathID test will be a non-invasive, rapid, safe and significantly less expensive alternative test for this large market, estimated by the company to be approximately $100 million. Since the cost and complexities of currently available modalities to detect CSPH could be limiting the identification of many patients with this serious condition, Exalenz believes that the availability of a more convenient breath-based test could eventually increase the overall size of the market.

“The start of this pivotal study represents an important milestone in our strategic plan to launch a broad portfolio of liver diagnostics based on our patient-friendly BreathID test,” said Larry Cohen, CEO of Exalenz Bioscience. “We believe that the availability of a less-invasive test will enable clinicians to detect CSPH in a greater number of chronic liver disease patients, while helping reduce healthcare costs.” Exalenz plans to launch clinical studies for the diagnosis and monitoring of additional liver indications including NASH (non-alcoholic steateohepatitis), HCC (hepatocellular carcinoma) and ALF (acute liver failure). These will be achieved in part through partnering with companies developing therapies for these diseases.

 

TOPICS

 

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Preface to Metabolomics as a Discipline in Medicine

Author: Larry H. Bernstein, MD, FCAP

 

The family of ‘omics fields has rapidly outpaced its siblings over the decade since
the completion of the Human Genome Project.  It has derived much benefit from
the development of Proteomics, which has recently completed a first draft of the
human proteome.  Since genomics, transcriptomics, and proteomics, have matured
considerably, it has become apparent that the search for a driver or drivers of cellular signaling and metabolic pathways could not depend on a full clarity of the genome. There have been unresolved issues, that are not solely comprehended from assumptions about mutations.

The most common diseases affecting mankind are derangements in metabolic
pathways, develop at specific ages periods, and often in adulthood or in the
geriatric period, and are at the intersection of signaling pathways.  Moreover,
the organs involved and systemic features are heavily influenced by physical
activity, and by the air we breathe and the water we drink.

The emergence of the new science is also driven by a large body of work
on protein structure, mechanisms of enzyme action, the modulation of gene
expression, the pH dependent effects on protein binding and conformation.
Beyond what has just been said, a significant portion of DNA has been
designated as “dark matter”. It turns out to have enormous importance in
gene regulation, even though it is not transcriptional, effected in a
modulatory way by “noncoding RNAs.  Metabolomics is the comprehensive
analysis of small molecule metabolites. These might be substrates of
sequenced enzyme reactions, or they might be “inhibiting” RNAs just
mentioned.  In either case, they occur in the substructures of the cell
called organelles, the cytoplasm, and in the cytoskeleton.

The reactions are orchestrated, and they can be modified with respect to
the flow of metabolites based on pH, temperature, membrane structural
modifications, and modulators.  Since most metabolites are generated by
enzymatic proteins that result from gene expression, and metabolites give
organisms their biochemical characteristics, the metabolome links
genotype with phenotype.

Metabolomics is still developing, and the continued development has
relied on two major events. The first is chromatographic separation and
mass  spectroscopy (MS), MS/MS, as well as advances in fluorescence
ultrasensitive optical photonic methods, and the second, as crucial,
is the developments in computational biology. The continuation of
this trend brings expectations of an impact on pharmaceutical and
on neutraceutical developments, which will have an impact on medical
practice. What has lagged behind, and may continue to contribute to the
lag is the failure to develop a suitable electronic medical record to
assist the physician in decisions confronted with so much as yet,
hidden data, the ready availability of which could guide more effective
diagnosis and management of the patient. Put all of this together, and
we can meet series challenges as the research community
interprets and integrates the complex data they are acquiring.

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Mapping the Universe of Pharmaceutical Business Intelligence: The Model developed by LPBI and the Model of Best Practices LLC

Mapping the Universe of Pharmaceutical Business Intelligence: The Model developed by LPBI and the Model of Best Practices LLC

 

Author and Curator of Model A: Aviva Lev-Ari, PhD, RN

Reporter on Model B: Aviva Lev-Ari, PhD, RN

 

This article provides the e-Reader with a MAP for navigation through two different Business Models that Co-exist in the EcoSystem of an industry called Pharmaceutical Business Intelligence.

Model A: is represented by Six Ventures of Leaders in Pharmaceutical Business Intelligence (LPBI), based in Boston, Philadelphia, CT, CA and Israel

Model B: is represented by Best Practices, LLC, headquartered in Chapel Hill, NC, with Offices in NYC and in Mumbai, India.

 

We concluded that the two models are viable, represent fast growth, the models and non-competing and are in full complementarity, thus, expanding the domain and the practice of the industrial sector, aka, Pharmaceutical Business Intelligence.

 

 

Model A:

Leaders in Pharmaceutical Business Intelligence (LPBI),

Boston, Philadelphia, CT, CA and Israel 

Team members

 

Our Growth Needs: Leaders in Pharmaceutical Business Intelligence

 

 Our Business Portfolio

VENTURE #1:

e-Publishing: Medicine, HealthCare, Life Sciences, BioMed, Pharmaceutical

  • Open Access Online Scientific Journal

http://pharmaceuticalintelligence.com Site statistics http://pharmaceuticalintelligence.com/wp-admin/index.php?page=stats

  • Scoop.it!.com

  1. http://www.scoop.it/t/cardiotoxicity
  2. http://www.scoop.it/t/cardiovascular-and-vascular-imaging
  3. http://www.scoop.it/t/cardiovascular-disease-pharmaco-therapy

VENTURE #2:

1. BioMedical e-Books e-Series: Cardiovascular, Genomics, Cancer, BioMed, Patient Centered Medicine

http://pharmaceuticalintelligence.com/biomed-e-books/

2. on Amazon’s Kindle e-Books List since 6/2013

3. Plans for Volume 1,2,3 – Hardcover

VENTURE #3:

International Scientific Delegations

http://pharmaceuticalintelligence.com/scientific-delegation/

  • Shanghai, May 2015
  • Barcelona, Spain, November 2015
  • Amsterdam, May 2016
  • Geneva, November 2016

 

VENTURE #4:

Funding, Deals & Partnerships

http://pharmaceuticalintelligence.com/joint-ventures/

 

VENTURE #5:

IP Invented HERE!

1.  Development of a NEW Nitric Oxide monitor to Alpha Szenszor Inc. sensor portfolio. A concept for a low cost POC e-nose, capable of real time ppb detection of Cancer The Cancer Team at Leaders in Pharmaceutical Business Intelligence under the leadership of Dr. Williams

2.  Development of a NEW Nitric Oxide monitor to Alpha Szenszor Inc. sensor portfolio. A concept for Inhaled Nitric Oxide for the Adult HomeCare Market – IP by Dr. Pearlman and Dr. A. Lev-Ari

a.  iknow iNO is i-kNOw – Inhaled Nitric Oxide for the HomeCare Markethttp://pharmaceuticalintelligence.com/2013/10/16/iknow-ino-is-i-know-inhaled-nitric-oxide-for-the-homecare-market/

b. electronic Book on Nitric Oxide by Nitric Oxide Team @ Leaders in Pharmaceutical Business Intelligence (LPBI)

Perspectives on Nitric Oxide in Disease Mechanisms

http://www.amazon.com/dp/B00DINFFY

c. The rationale and use of inhaled NO in Pulmonary Artery Hypertension and Right Sided Heart Failure Larry H. Bernstein 8/20/2012

d. Inhaled Nitric Oxide in Adults: Clinical Trials and Meta Analysis Studies – Recent Findings

Aviva Lev-Ari, PhD, RN, 6/2/2013

e. Clinical Indications for Use of Inhaled Nitric Oxide (iNO) in the Adult Patient Market: Clinical Outcomes after Use, Therapy Demand and Cost of Care

Aviva Lev-Ari, PhD, RN, 6/3/2013

3.  Cancer Genomics for NEW product development in diagnosis and treatment of Cancer Patients using sensory technology with applications for Radiation Therapy –The Cancer Team at Leaders in Pharmaceutical Business Intelligence under leadership of TBA

4.  Developing Mitral Valve Disease: MRI Methods and Devices for Percutaneous Mitral Valve Replacement and Mitral Valve Repair Augmentation of Patented Technology using RF – Dr. Pearlman’s IP Non-Hardware Mitral Annuloplasty – Dr. Justin D. Pearlman

http://pharmaceuticalintelligence.com/joint-ventures/valvecure-llc/non-hardware-mitral-annuloplasty-dr-justin-d-pearlman/

5.  Novel Technology using MRI for Vascular Lesions, Tumors, Hyperactive Glands and non-Surgical Cosmetic Reconstruction – Dr. Pearlman’s IP

http://pharmaceuticalintelligence.com/biomed-e-books/series-a-e-books-on-cardiovascular-diseases/httppharmaceuticalintelligence-combiomed-e-bookscardiovascular-diseases-causes-risks-and-management/cvd-business-affairs/mitral-valve-disease-mri-methods-and-devices/

 

VENTURE # 6:

PRESS Coverage of Conferences

http://pharmaceuticalintelligence.com/press-coverage/

Model B:

 
Best Practices, LLC, Chapel Hill, NC, Mumbai, India, Branch in New York

 

Best Practices, LLC
6350 Quadrangle Drive, Suite 200,
Chapel Hill, NC 27517

+1 919-403-0251

SOURCE

http://www.best-in-class.com/sitemap

 

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