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Blood forming precursors in bone marrow

Larry H. Bernstein, MD, FCAP, Curator

LPBI

 

Blood stem cells study could pave the way for new cancer therapy

UNIVERSITY OF EDINBURGH

IMAGE

http://media.eurekalert.org/multimedia_prod/pub/web/110842_web.jpg

This image shows the formation of blood stem cells inside the embryonic vessel called dorsal aorta. In green is shown secreted molecule called NOGGIN, which plays an important role in this process. The University of Edinburgh

People with leukaemia could be helped by new research that sheds light on how the body produces its blood supply.

Scientists are a step closer to creating blood stem cells that could reduce the need for bone marrow transplants in patients with cancer or blood disorders.

Enabling scientists to grow the stem cells artificially from pluripotent stem cells could also lead to the development of personalised blood therapies, researchers say.

Blood stem cells are found in bone marrow and produce all blood cells in the body. These cells – known as haematopoietic stem cells (HSCs) – help to restore blood supply in patients who have been treated for leukaemia.

Researchers used a mouse model to pinpoint exactly how HSCs develop in the womb. They showed for the first time how three key molecules interact together to generate the cells, which are later found in adult bone marrow.

The discovery could help scientists to recreate this process in the lab, in the hope that HSCs could one day be developed for clinical use.

Scientists say this fundamental understanding of early development may also have an impact on other diseases that affect blood formation and supply.

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The research has been published in Nature Communications.

Professor Alexander Medvinsky, of the University of Edinburgh’s MRC Centre for Regenerative Medicine said: “There is a pressing need to improve treatments for diseases like leukaemia and this type of research brings us a step closer to that milestone. The more we understand about how embryos develop these blood stem cells, the closer we come to being able to make them in the lab.”

http://www.ed.ac.uk/news/2016/stem-cells-100316

Céline Souilhol, Christèle Gonneau, Javier G. Lendinez, Antoniana Batsivari, Stanislav Rybtsov, Heather Wilson, Lucia Morgado-Palacin, David Hills, Samir Taoudi, Jennifer Antonchuk, Suling Zhao, Alexander Medvinsky. Inductive interactions mediated by interplay of asymmetric signalling underlie development of adult haematopoietic stem cells. Nature Communications, 2016; 7: 10784 DOI: 10.1038/ncomms10784

During embryonic development, adult haematopoietic stem cells (HSCs) emerge preferentially in the ventral domain of the aorta in the aorta–gonad–mesonephros (AGM) region. Several signalling pathways such as Notch, Wnt, Shh and RA are implicated in this process, yet how these interact to regulate the emergence of HSCs has not previously been described in mammals. Using a combination of ex vivo and in vivo approaches, we report here that stage-specific reciprocal dorso–ventral inductive interactions and lateral input from the urogenital ridges are required to drive HSC development in the aorta. Our study strongly suggests that these inductive interactions in the AGM region are mediated by the interplay between spatially polarized signalling pathways. Specifically, Shh produced in the dorsal region of the AGM, stem cell factor in the ventral and lateral regions, and BMP inhibitory signals in the ventral tissue are integral parts of the regulatory system involved in the development of HSCs.

Haematopoietic stem cells (HSCs) lie at the foundation of the adult haematopoietic system, and give rise to cells of all blood lineages throughout the lifespan of an organism. An important property of adult (definitive) haematopoietic stem cells (dHSCs) is that they are capable of long-term reconstitution of the haematopoietic system upon transplantation into irradiated recipients. In the mouse, such cells develop by embryonic stages E10–E11 in the aorta–gonad–mesonephros (AGM) region1, 2, 3, 4. An ex vivo approach showed that the AGM region has a robust autonomous capacity to generate dHSCs1. The AGM region comprises the dorsal aorta flanked on both sides by the urogenital ridges (UGRs), which contain embryonic rudiments of kidney and mesonephros. HSCs develop in a polarized manner, predominantly in the ventral floor of the dorsal aorta (AoV), more rarely in the dorsal domain of the dorsal aorta (AoD), and are absent in the UGRs2, 5, 6, 7. Localization of dHSCs to the AoV in mouse and human embryos was shown by long-term reconstitution experiments5, 6.

Abundant evidence indicates that during development, a specialized embryonic endothelial compartment known as haematogenic (or haemogenic) endothelium gives rise to haematopoietic stem and progenitors cells7, 8, 9, 10. The haematopoietic programme in various vertebrate models is executed predominantly in the AoV, and is recognized by the expression of essential haematopoietic transcription factors, for example, Runx1 and cKit, and the appearance of clusters of haematopoietic cells budding from the endothelium of the dorsal aorta6, 8, 9, 11, 12, 13, 14.

It is broadly accepted that HSCs develop from the haematogenic endothelium within intra-aortic clusters. This transition involves several consecutive maturation steps of HSC precursors: pro-HSCsright arrowpre-HSC type Iright arrowpre-HSC type IIright arrowdHSC15, 16, 17. All these precursors express endothelial markers, such as vascular-endothelial cadherin (VC) and CD31, and sequentially upregulate haematopoietic surface markers: CD41 (pro-HSCs), CD43 (pre-HSC type I) and finally CD45 (pre-HSC type II). This maturation process occurs in the dorsal aorta between E9 and E11. Specifically, pro-HSCs emerge at E9, pre-HSCs Type I appear at E10 and pre-HSCs type II predominantly at E11. Unlike dHSCs, pre-HSCs cannot reconstitute the adult haematopoietic system by direct transplantation and require prior maturation in an embryonic or neonatal environment15, 16, 17, 18,19.

A number of signalling pathways (Notch, Wnt, retinoic acid, interleukin-3 and inflammatory) have been implicated in HSC development; however, a coherent picture is yet to be elucidated15, 17, 20,21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31. HSC precursors (pro-HSCs, pre-HSCs type I and pre-HSCs type II) express cKit17 from early developmental stages. A recent study has shown that the cKit ligand, known as stem cell factor (SCF), is a key regulator driving maturation of these HSC precursors into dHSCs in the AGM region17, which is in agreement with the marked decline of HSC activity in SCF mutant mice32, 33. In the adult, SCF is critically important for HSC maintenance in the bone marrow niche, mainly in the endothelial compartment32. Sonic Hedgehog (Shh) and bone morphogenetic protein 4 (BMP4) pathways are also important mediators; in zebrafish, these two morphogenes are involved in arterial specification and haematopoietic patterning, respectively34,35. In the mouse, subaortic BMP4 and Shh/Indian Hedgehog derived from gut were also proposed to be responsible for HSC development36, 37.

During development, interactions between spatially segregated compartments are essential for tissue patterning and specification, and are often mediated by gradients of secreted molecules38,39, 40. Molecules secreted by distant tissues, such as somites, can influence HSC development in the AGM region41, 42, 43, 44, 45. Developing HSCs are embedded in the complex AGM microenvironment, suggesting that HSC development may require signals derived from different compartments of the AGM region. We sought to test this hypothesis. However, the analysis of HSC development in vivo is significantly hampered by low accessibility of embryos developing in utero, fast maturation of dHSCs, lack of uniquely specific markers for HSC precursors and their low numbers in the AGM region. Therefore, we employed here a robust ex vivo culture system that models HSC development in the embryo in combination with functional HSC analysis using in vivolong-term reconstitution assay15, 16, 17. Specifically, to study interactions between AGM subregions, we took advantage of the in vitro reaggregation system that enables close juxtaposition of cell types15.

We show that interactions between three compartments of the AGM, the AoV, the AoD and the UGRs, are necessary for efficient generation of dHSCs. First, we show that dHSC activity in the isolated E10.5 AoV is limited but can be significantly enhanced by co-culture with the AoD, and that this is mediated at least partly by Shh, secreted dorsally in vivo. Second, while HSC activity in isolated E11.5 AoD is limited, co-culture with a competent AoV microenvironment activates dHSC generation in the AoD. We found that this effect is mediated by SCF, which is secreted abundantly by the AoV stroma in vivo as shown here. Third, we show that downregulation of BMP4 signalling by BMP antagonist Noggin, which is present at high levels in the AoV and especially in intra-aortic clusters as revealed here by in vivo observations, is required for HSC development. Fourth, UGRs, which express high levels of SCF, also enhance HSC development in the dorsal aorta.

Our results based on in vivo observations and ex vivo modelling strongly suggest that juxtaposed, anatomically distinct domains within the AGM region create a complex landscape of interactive signals that underpins HSC development.

Pre-HSCs localize preferentially to the AoV

As dHSCs mature from pre-HSCs, we investigated whether the emergence of dHSC predominantly in the AoV6 is a result of asymmetric (ventralized) distribution of pre-HSCs. Dorsal aortae were separated from UGRs and bisected into AoV and AoD (including notochord) as described previously6 (Supplementary Fig. 1a). The different domains were then directly transplanted into irradiated mice to detect dHSCs. We first confirmed our previous observation that at E11.5 dHSCs appear almost exclusively in the AoV, although some dHSCs were in the AoD and engrafted few recipients at high level (Supplementary Fig. 1b). Limiting dilution analysis showed that dHSCs are approximately four times more frequent in the AoV compared with AoD. UGRs did not contain HSCs in line with previous reports2, 6.

We then investigated the spatial distribution of pre-HSCs type I and pre-HSCs type II in E10.5–E11.5 embryos using the OP9 co-culture system supplemented with Il3+SCF+Flt3 (termed 3GF), which allows pre-HSCs (which do not engraft by direct transplantation) to mature into dHSC that become detectable by long-term repopulation assay as described previously16. Doses of transplanted cells (expressed in embryo equivalents, e.e.) were chosen based on the requirements of individual experiments (explained in Methods section). In these experiments (Fig. 1), the dose injected was high (1–2e.e.) to detect potentially low dHSC numbers in AoD and UGRs.

Figure 1: Localization of pre-HSCs in the AGM region.

Localization of pre-HSCs in the AGM region.

(a) E10.5 AoV, AoD and UGRs were co-aggregated with OP9 and cultured for 5 days, and the formation of dHSCs was then tested by transplantation into irradiated mice (2e.e. per recipient; AoV: six independent experiments; AoD: four independent experiments; UGRs: two independent experiments). Dashed line indicates the cutoff for high-level engraftment (>70% donor chimaerism). (b) E11.5 aortas and UGRs were transplanted after reaggregate culture (Ao: 0.2e.e. per recipient and UGRs: 1e.e. per recipient; two independent experiments). (c,d) Pre-HSCs type I (VC+CD45) (c) or type II (VC+CD45+) (d) sorted from E11.5 AoV and AoD were co-aggregated with OP9 cells and transplanted after culture (1e.e. per recipient; two independent experiments). (ad) Levels of engraftment are plotted, and number of repopulated versus total number of transplanted mice are shown in brackets. Number of embryo equivalents (ee) injected in each experiment are indicated on the graphs. (*P<0.05; ***P<0.005; Mann–Whitney U-test). In all these experiments, tissues were cultured with three growth factors (Flt3I, Il3 and SCF). AGM, aorta–gonad–mesonephros region; Ao, dorsal Aorta; AoV, ventral domain of the dorsal aorta; AoD, dorsal domain of the dorsal aorta; UGRs, urogenital ridges.

We have shown previously that E10.5 AGM region mainly contains type I pre-HSCs, whereas at E11.5, type I and type II pre-HSCs co-exist16. Dissected E10.5 AGM regions co-cultured with OP9 in 3GF for 5 days were transplanted into adult irradiated recipients. Out of 21 recipients that received cultured AoV, 20 showed high levels (>70%) of donor-derived long-term haematopoietic chimerism (Fig. 1a). In contrast, only 7 out of 16 recipients of cultured AoD were repopulated at high levels (>70%), while the remaining recipients showed lower or no repopulation (7 and 2, respectively). Cultured UGRs did not produce dHSCs (Fig. 1a). Thus, we conclude that the E10.5 AoD does contain pre-HSCs but at significantly lower numbers than the AoV.

We then investigated whether pre-HSCs localization changes in E11.5 embryos and found that pre-HSCs were still exclusively localized to the dorsal aorta; UGRs carefully separated from the lateral mesenchyme adjacent to the dorsal aorta did not give any repopulation after culture (Fig. 1b). To establish the location of pre-HSCs within the E11.5 dorsal aorta, cell populations enriched for pre-HSCs type I (VC+CD45) and pre-HSCs type II (VC+CD45+) were sorted from AoV and AoD, and co-cultured with OP9 stromal cells in the presence of 3GF as described previously16. We again were able to detect pre-HSC activity in AoD although at lower levels than in AoV. After maturation ex vivo, pre-HSCs type I from AoV and AoD repopulated 7 of 11 and 2 of 8 recipients, respectively (Fig. 1c). Similarly, cultured pre-HSCs type II from AoV and AoD repopulated 11 out of 12 and 4 out of 10 recipients, respectively (Fig. 1d). In all cases, multilineage engraftment was confirmed (Supplementary Fig. 2). These data show that pre-HSCs are significantly enriched in AoV.

Reciprocal inductive interactions between AoD and AoV

To explore hypothetical interactions between AoD and AoV, we made use of a dissociation–reaggregation system that recapitulates HSC development ex vivo15. This system allowed us to integrate AGM domains in a three-dimensional tissue-like organoid15 and study their interactions in HSC development. To track the origin of dHSCs, AoV and AoD from wild-type (WT) and green fluorescent protein (GFP) embryos with constitutive expression of GFP46 were co-aggregated (termed AoV//AoD co-aggregates) and cultured for 5 days in the presence of 3GF before transplantation (Fig. 2a). Mice transplanted with AoV//AoD co-aggregates can be reconstituted by dHSCs coming from AoD and AoV. The presence of GFP allowed the individual contributions of AoV and AoD to the total repopulation level within the same mouse to be assessed (Fig. 2b,c). This is presented in two separate columns in the graph. Namely, while columns 1 and 3 represent the same recipient mice, the former shows exclusively the contribution of the AoD and the latter shows exclusively the contribution of the AoV into each recipient. To assess the influence of AoD and AoV interaction on HSC development, the repopulation by co-aggregated AoD (column 1) or AoV (column 3) can then be compared with repopulation by independently cultured AoD (column 2) or AoV (column 4). All experiments included reciprocal use of WT and GFP tissues in AoV//AoD co-aggregates, and we observed no difference in repopulation properties between WT and GFP embryos. Homotypic AoV//AoV and AoD//AoD co-aggregates were always used as controls. Note that in these experiments, only 0.2e.e. were injected per recipient, to ensure that the repopulation levels were not saturated and to allow any inductive effects to be revealed.

Figure 2: Inductive interactions between AoV, AoD and UGRs as revealed by an ex vivomodel system.

Inductive interactions between AoV, AoD and UGRs as revealed by an ex vivo model system.

(a) Experimental design: the ventral domain (AoV) and the dorsal domain (AoD) of the aorta, and the urogenital ridges (UGRs) from wild-type (WT) and GFP+ embryos were subdissected, and chimeric reaggregates from tissues of these two genotypes were generated. Left column: to test interactions between AoV and AoD, chimeric AoV//AoD reaggregates were generated and transplanted into irradiated recipients after 4–5 days of culture (b,c). Right column: to test interactions between Ao and UGRs, chimeric Ao//UGR reaggregates were generated and transplanted into irradiated recipients after 4–5 days culture (d). GFP+ and/or GFP− donor-derived long-term repopulation allowed us to conclude whether dHSCs originated from AoV, AoD or UGRs. Accordingly, the tissue of origin of donor dHSCs is indicated below each graph. (b) E10.5 aortas from WT and GFP embryos were used to generate chimeric reaggregates as depicted schematically above plots. The reciprocal combination of WT and GFP tissues was used to generate AoV//AoD reaggregates. The tissue source of dHSCs is shown separately in the leftmost (AoD) and rightmost (AoV) columns as indicated below the plot (0.2e.e. per recipient; two independent experiments). (c) E11.5 aortas from WT and GFP embryos were used to generate chimeric reaggregates. The tissue source of dHSCs is shown separately in the leftmost (AoD) and rightmost (AoV) columns as indicated below the plot (0.2e.e. per recipient; two independent experiments). (d) E11.5 aortas (Ao) and UGRs from WT and GFP embryos were used to generate Ao//UGR chimeric reaggregates. As depicted schematically above the plot, the reciprocal combination of WT and GFP tissues was used to generate Ao//UGR reaggregates. The tissue source of dHSCs is shown separately in left (Ao) and right (UGRs) columns as indicated below the plot (0.01e.e. per recipient; six independent experiments). (e) Reaggregation of WT Ao with UGRs generate more dHSCs than Ao alone (0.05e.e. per recipient; two independent experiments). (be) In all these experiments, tissues were cultured with three growth factors.

Using this approach, we found that the E10.5 AoV generates more dHSCs when combined with AoD than on its own (Fig. 2b, compare two rightmost columns). One day later, E11.5 AoD had no positive influence on dHSC generation by AoV (Fig. 2c, compare two rightmost columns). Conversely, the E11.5 AoD produced more HSCs when reaggregated with the AoV than on its own (Fig. 2c, compare two leftmost columns). This inductive effect of AoV on AoD was not observed at E10.5 (Fig. 2b, compare two leftmost columns). These ex vivo modelling experiments revealed reciprocal stage-specific effects of AoV and AoD on HSC development, which could be explained by the differential release of factors by the two regions and/or by differences in the competency of the target cells to respond to signals.

UGRs enhance HSC development in the dorsal aorta  

SCF expression is involved in polarized HSC development

Figure 3: Involvement of polarized stem cell factor in HSC development.

Involvement of polarized stem cell factor in HSC development.

(a) qRT–PCR on fresh AoV, AoD and UGRs at E10.5 and E11.5 showed high expression levels of stem cell factor (SCF) in AoV and UGRs, compared with AoD (data are mean±s.e.m; *P<0.05, **P<0.01, t-test; three independent experiments). No significant difference was observed between E10.5 and E11.5 expression level in any of the tissues. (b) Expression of SCF-GFP and CD31 determined by immunostaining on thick section (300μm) of SCF-GFP-positive E10.5 AGM region and on SCF-GFP-negative control. Bars, 50μm. (c) Expression of SCF in sorted populations from fresh E10.5–E11.5 AoV (V) and AoD (D) determined by qRT–PCR. Endo, endothelial population (VC+CD45CD43); type I, pre-HSCs type I (VC+CD45CD43+); type II, pre-HSCs type II (VC+CD45+); stroma, stromal population (VCCD45CD43). (*P<0.05, t-test; five independent experiments). (d) E10.5 AoD were cultured as reaggregates in the presence of Il3 and Flt3L with or without SCF and human SCF antagonist (SCF-Rh). (0.5e.e. per recipient; three independent experiments). (e,f) E11.5 AoD (two independent experiments) (e) and E10.5 AoV (two independent experiments) (f) were cultured as explants with or without SCF (no other cytokines); (0.2e.e. per recipient).

 

Shh signalling enhances dHSC generation

 

Figure 4: Sonic Hedgehog is a positive modulator of pre-HSC type I.

Sonic Hedgehog is a positive modulator of pre-HSC type I.

(a) Expression level of Sonic Hedgehog (Shh) in E10.5 and E11.5 AGM region determined by qRT–PCR. (data are mean±s.e.m; *P<0.05, t-test; E10.5: three independent experiments and E11.5: two independent experiments). (b) Patched1 and Gli1 expression in endothelial cells (endo: VC+CD45CD43), pre-HSCs type I (I: VC+CD45CD43+) and type II (II: VC+CD45+) sorted from E11.5 AoV and AoD (two independent experiments). (c) E10.5 AoV and AoD explants were cultured in presence of Shh recombinant protein before transplantation (AoV: 0.1e.e. per recipient; two independent experiments and AoD: 0.2e.e. per recipient; three independent experiments). (d) E10.5 AoV and doxycyline-inducible OP9-Shh were co-aggregated and cultured in presence or absence of doxycycline and/or Hedgehog (Hh) antagonist (200nM) before transplantation (0.2e.e. per recipient; two independent experiments). (e) 10.5 AoV and AoD co-aggregated with OP9 were cultured in presence of three growth factors with Hh antagonist before transplantation; (0.2e.e. per recipient; two independent experiments). (f) E11.5 AoV explants were cultured in presence of Shh recombinant protein before transplantation; (0.2e.e. per recipient; two independent experiments). (g): E11.5 AGM reaggregates were cultured in presence of Hh antagonist before transplantation; (0.1e.e. per recipient; two independent experiments). (c,d,f,g) In all these experiments, tissues were cultured without cytokines. Hh anta, Hh antagonist; Dox, doxycycline.

 

BMP signalling is downregulated in the dHSC lineage

Figure 5: Bone morphogenetic protein signalling is downregulated in dHSC lineage.

Bone morphogenetic protein signalling is downregulated in dHSC lineage.

(a) Expression of bone morphogenetic protein 4 (BMP4) at E10.5 determined by qRT–PCR; (data are mean±s.e.m.; *P<0.05, t-test; three independent experiments). (b) Expression of BMP4 in the E10.5 AGM region determined by immunostaining on frozen sections. Bars, 50μm. Zoomed image shows the subendothelial localization of BMP4 (arrowheads). Bars, 10μm. (c) Expression of phosphorylated-Smad (P-Smad) in the E10.5 AGM region determined by immunostaining on frozen sections. Bars, 50μm. (d) Id genes expression in endothelial cells, pre-HSCs type I and type II directly isolated from E10.5 and E11.5 AoV determined by qRT–PCR. Endo, endothelial population (VC+CD45CD43); type I, pre-HSCs type I (VC+CD45CD43+); type II, pre-HSCs type II (VC+CD45+); stroma, stromal population (VCCD45CD43). (Data are mean±s.e.m.; *P<0.05, **P<0.01; t-test; five independent experiments). (eg) Expression of P-Smad, CD31 and CD45 in the endothelium and haematopoietic clusters of E10.5 dorsal aorta. White arrowheads indicate cells with pre-HSC type II phenotype (CD31+CD45+); green arrows show (CD31+CD45−/low) cells budding out of the dorsal aorta and expressing P-Smad; asterisks indicate CD31+CD45 cells expressing P-Smad within the endothelium. Bars, 10μm. A positive control showing P-Smad staining in the dorsal part of the neural tube can be found in h.

 

Figure 6: Haematopoietic clusters are exposed to low concentration of BMP4 and high levels of Noggin.

Haematopoietic clusters are exposed to low concentration of BMP4 and high levels of Noggin.

(a) Expression of BMP antagonists at E10.5 determined by qRT–PCR (data are mean±s.e.m.; *P<0.05,***P<0.005; t-test; three independent experiments). (b) Expression of Noggin in the E10.5 AGM region determined by immunostaining on frozen sections. Note the expression of Noggin in the notochord (Nt) as expected. Bar, 50μm. (c) Expression of Noggin and BMP4 in intra-aortic clusters characterized by cKit and CD31 expression. Note that BMP4 is mainly expressed underneath the dorsal aorta (arrowheads), while Noggin is expressed in the cluster (arrows). Bars, 10μm. (d) Expression of Noggin in isolated populations from E10.5 and E11.5 AoV (V) and AoD (D) determined by qRT–PCR. (*P<0.05, t-test; five independent experiments). (e) Model showing downregulation of BMP activity in dHSC lineage. BMP4 is mainly expressed in the ventral mesenchyme, while Noggin is found in haematopoeitic clusters. Accordingly, BMP activity, assessed by the phosphorylation of Smad1,5 and 8 (P-Smad), is high in mesenchymal cells underneath the aortic endothelium and in some endothelial cells (CD31+CD45) of the aortic endothelium and decreases in the haematopoeitic clusters. While some pre-HSC type I cells (CD31+CD45−/low) exhibit BMP signalling at a low level, acquisition of CD45 (shown in red) is accompanied by a complete loss of BMP activity. EC, endothelial cells; MC, mesenchymal cells; I, pre-HSC type I; II, pre-HSC type II.

 

BMP signalling inhibits HSC development

http://www.nature.com/ncomms/2016/160308/ncomms10784/images_article/ncomms10784-f7.jpg

 

Interactions between SCF, Shh and BMP signalling pathways

Interplay between SCF, Shh and BMP pathways underpins inductive interactions in the AGM.

 

We have shown previously that during murine embryo development definitive HSCs emerge predominantly in the ventral domain of the dorsal aorta (AoV)6. This spatially polarized production of HSCs might be explained by different origins of dorsal and ventral endothelium and/or by asymmetric production of key factors involved in HSC development37, 52, 53 and we reasoned that directional inductive interactions between AGM compartments could be involved. Great insight into inductive interactions in various organs has previously been obtained through in vitro modelling39. Here we modelled interactions between AGM domains in a co-culture system, which supports HSC development15. Using this ex vivo system, we demonstrate that at early stages (E10.5) HSC maturation in the AoV region is enhanced by the presence of the AoD. One day later (E11.5), the AoV microenvironment is able to induce HSC development in the AoD, previously thought to be mostly devoid of HSC activity6. We also found that UGRs can enhance HSC production from the dorsal aorta, but cannot generate dHSCs themselves, even under influence of the dorsal aorta. Thus, our data strongly suggest that reciprocal stage-specific inductive AoD//AoV interactions and involvement of UGRs are required for execution of the robust development of HSCs in vivo.

Our data indicate that previously established dorso–ventrally polarized HSC development6 is defined by two main factors. First, our current data show that although the AoD contains pre-HSCs (both type I and type II), their numbers are lower than in AoV, in line with lower intra-aortic cluster formation previously described in mouse AoD6, 13. Second, as shown here, dHSCs can be induced in the AoD by the AoV, and therefore the dHSCs deficiency in AoD cannot be explained solely by asymmetric pre-HSC distribution, but may also be influenced by differences in the microenvironment.

To study this, we focused on SCF, Shh and BMP4, whose expressions are dorso–ventrally polarized in the AGM region36, 47, 49 (and current data). We found that SCF is an inductive signal that is expressed at high levels in the AoV and UGRs, and can stimulate HSC development in isolated AoD, a region which had previously been considered to be mostly devoid of HSC activity. This is in agreement with a key role of SCF in HSC maturation17. We found that the aortic endothelial compartment expresses high levels of SCF, suggesting its important role in HSC development comparable to the bone marrow microenvironment of adult HSCs32. Importantly, we found that the pre-HSC type I population expresses SCF suggesting a positive-autocrine loop, which could promote HSC development.

Shh signalling in zebrafish is required for aortic angioblast migration and subsequent arterial specification of the dorsal aorta34, 54. We found that in mouse Shh stimulates and a Hh antagonist inhibits the development of HSCs at E10.5 but not at E11.5, in keeping with a previous study37. The induction of dHSCs in AoV by AoD is also limited to the E10.5 stage. Since Shh is secreted by the notochord (which is included in AoD-dissected tissue), this stage specificity is likely defined by the predominant presence of pre-HSCs type I at E10.5, which express higher levels of Shh signalling components (Ptch1 and Gli1) compared with pre-HSCs type II. By E11.5, the pre-HSC population is mainly represented by type II cells15. Stage-specific loss of sensitivity to Hh signalling was also described in the developing neural tube55. Notably, the poor ability of AoD to develop HSCs despite abundant presence of Shh can also be explained by lower levels of Ptch1 and Gli1 detected in AoD- compared with AoV-derived pre-HSC type I. Our ex vivo modelling data indicate that AoD-derived Shh is an active inducer of HSC development in the AGM region. This conclusion does not exclude the possibility that Shh secreted by the gut could also reach the dorsal aorta37, although by E10.5 these sites are separated by an extended mesentery.

BMP4 signalling is a key factor involved during differentiation of ventral mesoderm and its further specification into haematopoietic cells. In zebrafish, BMP signalling is clearly required during the patterning of the dorsal aorta and for the emergence of dHSCs in the ventral wall34. Its role in mouse is less clear due to the early lethality of BMP mutants56. Several lines of evidence point to BMP4 as a good candidate regulating HSC development. Indeed, BMP4 is highly expressed in the ventral mesenchyme underneath the dorsal aorta34, 36, 49; some reports suggested its role in controlling dHSC emergence36, 57, 58. However, the in vitro systems used likely assayed the maintenance of dHSCs, rather than their maturation. It was also reported that BMP4 signalling can define their differentiation potential59. BMP4 is also involved in the regulation of essential haematopoietic transcription factors such as Scl/Gata2/Fli1 and Runx1 (refs 60, 61). Here we analysed BMP signalling activity in the dHSC lineage in the AGM region. We show that in vivo the pre-HSC type I to type II transition is accompanied by a downregulation of BMP targets (Id genes). This correlates with our data demonstrating that BMP activity is downregulated in intra-aortic clusters and the observations of others that Runx1 expression is attenuating in the developing HSC lineage60, 62, 63. How is this decrease of BMP activity achieved in vivo, despite the presence of BMP4 in AoV? It has previously been noted that in amphibian embryos several BMP inhibitors are also expressed in AoV34. Similarly, our analysis of the embryo showed high expression of a number of BMP antagonists as well as inhibitory Smad6 and Smad7 in mouse AoV that may counteract BMP4 action in HSC lineage. Furthermore, we found that in the AGM region BMP4 and Noggin are spatially segregated: Noggin being present in haematopoietic clusters and BMP4 being mainly expressed underneath the aortic endothelium. Therefore, maturing HSCs in clusters are exposed to low BMP4 concentration and high concentration of the BMP antagonist Noggin. Furthermore, our qRT–PCR analysis shows that the pre-HSC type I population expresses Noggin, which possibly creates a very effective shield that protects them from BMP4. Accordingly, our ex vivo analysis strongly suggests that downregulation of BMP signalling is functionally important for HSC development in the embryo. Indeed, forced BMP signalling activation by the addition of BMP4, strongly inhibits HSC development, and conversely the addition of Noggin stimulates HSC development in E10.5–E11.5 AGM cultures. These results are in line with recent observation that deletion of Smad4, a common transducer for BMP4/TGFβ signalling, markedly augments the formation of intra-aortic clusters64. Our data do not exclude the possibility that BMP4 is essential for specification of mouse dHSCs at earlier stages, as described in the zebrafish model, where BMP signalling is required for HSC development at stages closer to mouse E8.5 (ref. 34).

Our analysis indicates that all three signalling pathways studied can cooperate for HSC development (Fig. 8c). Notably, the interplay of Shh and BMP pathways is broadly involved in development. For example, counter gradients of polarized Shh and BMP signalling in the developing spinal cord specify neuronal subsets along the dorso–ventral axis65, and the dorsal aorta resembles the neural tube with inverse orientation of Shh- and BMP-secreting centres34. However, we detected an antagonistic relationship between Shh and BMP pathways. At the molecular level, Shh can induce Noggin and Smad6 expression, thus inhibiting BMP4 signalling. In turn, BMP4 suppresses and, accordingly, Noggin enhances Shh signalling. Cooperation between Shh and Noggin has been previously described as critically important for developmental specification of somitic, neural and hair follicle cells66, 67, 68. Our in vitro data suggest that the feed-forward loop Shhright arrowNoggin/Nogginright arrowShh is also involved in HSC development in vivo.

We propose a model where the polarized secreted factors form complex fields of gradients in vivo, which define an effector zone for optimal HSC development in the dorsal aorta and lead to the ventrally shifted appearance of dHSCs (Fig. 8c). Of interest, intra-aortic clusters are abundant in ventro–lateral positions69, which may reflect the position of this zone. The dissection close to such a zone could lead to accidental inclusion of powerful dHSCs in AoD samples observed here. Furthermore, it is possible that spatial segregation of co-operating and spatial overlap of antagonizing factors may also be important for adjustment of HSC development in vivo. Indeed, although the pool of pre-HSCs in the AGM region markedly expands during E9.5–11.5 (Rybtsov et al., submitted), complete maturation of the HSC pool is limited: while the majority of cells reach the pre-HSC type II stage, only one or two dHSCs are generated by the end of E11. Such controlled dynamics of HSC development may be needed to prevent a burst of active haematopoiesis in the AGM region. How exactly HSC maturation dynamics depend on overlapping concentrations of factors requires further analysis. Although ex vivo modelling is a powerful tool to dissect mechanisms of HSC development in vivo, there will likely be some variation in details. For example, spatial polarization in the developing HSC niche may define kinetics of HSC development in vivo.While we have demonstrated spatial polarization in vivo of the factors driving HSC development in our model system, it is currently unclear whether any factors become expressed in a polarized manner within the reaggregates and as such, whether polarization is also a pre-requisite for HSC maturation. Alternatively, if polarization is not required, the entire reaggregate may replicate the optimal zone for HSC development, resulting in massive generation of dHSCs. The distinction between these two scenarios will require further investigation.

In summary, our ex vivo modelling experiments suggest that HSC development in the embryo involves stage-dependent interactions between dorsal, ventral and lateral domains of the AGM region, mediated at least partly by the interplay of SCF, Shh, BMP4 and Noggin. Further detailed analysis will be required to better understand the complexity of the AGM signalling landscape in which HSC development takes place. Such knowledge may lead to development of novel protocols for the generation of definitive HSCs in vitro for clinical applications.

Integrated genomic DNA/RNA profiling of hematologic malignancies in the clinical setting

Jie He1Omar Abdel-Wahab2Michelle K. Nahas1Kai Wang1Raajit K. Rampal3Andrew M. Intlekofer4, et al.
http://www.bloodjournal.org/content/early/2016/03/10/blood-2015-08-664649March 10, 2016

Key Points

  • Novel clinically-available comprehensive genomic profiling of both DNA and RNA in hematologic malignancies.

  • Profiling of 3696 clinical hematologic tumors identified somatic alterations that impact diagnosis, prognosis, and therapeutic selection

The spectrum of somatic alterations in hematologic malignancies includes substitutions, insertions/deletions (indels), copy number alterations (CNAs) and a wide range of gene fusions; no current clinically available single assay captures the different types of alterations. We developed a novel next-generation sequencing-based assay to identify all classes of genomic alterations using archived formalin-fixed paraffin-embedded (FFPE), blood and bone marrow samples with high accuracy in a clinically relevant timeframe, which is performed in our CLIA-certified CAP-accredited laboratory. Targeted capture of DNA/RNA and next-generation sequencing reliably identifies substitutions, indels, CNAs and gene fusions, with similar accuracy to lower-throughput assays which focus on specific genes and types of genomic alterations. Profiling of 3696 samples identified recurrent somatic alterations that impact diagnosis, prognosis and therapy selection. This comprehensive genomic profiling approach has proved effective in detecting all types of genomic alterations, including fusion transcripts, which increases the ability to identify clinically-relevant genomic alterations with therapeutic relevance.

Cohesin Ring Rules Blood Stem Cells, Binds Them to Renewal or Expansion

GEN News    http://www.genengnews.com/gen-news-highlights/cohesin-ring-rules-blood-stem-cells-binds-them-to-renewal-or-expansion/81252512/

A genome-wide RNAi screen was used to assess the effects of 15,000 genes on the balance between self-renewal and differentiation of human hematopoietic stem cells (HSCs). The screen identified candidate genes whose knockdown maintained the HSC phenotype during culture. Such findings could lead to better protocols to grow these cells outside the body, potentially making bone marrow transplants more available to patients suffering blood cancers, or even identifying novel genes to target during the treatment of leukemia (left and right panels). Four genes in particular implicated cohesin, a ring-like protein complex that binds to the DNA in all of our cells, in the control of self-renewal versus differentiation in HSCs. Deficiency of cohesin causes an increase in self-renewal and a decrease in differentiation of HSCs. [Cell Reports]

Best known for its ability to regulate the separation of sister chromatids during cell division, the cohesin protein complex, a ring-shaped structure, has shown that it has other powers, such as the facilitation of DNA repair and the modification of transcription. And now, according to scientists based at Lund University, there is evidence that the cohesin complex controls the growth of blood stem cells. More to the point, the cohesin complex determines whether blood stem cells self-renew or differentiate.

The new finding is significant because it can help scientists improve the expansion of blood stem cells outside the body, thus increasing the supply of blood stem cells to patients suffering leukemia or hereditary blood disorders. Besides making bone marrow transplant material more available, the new finding could point scientists to new points of attack for the treatment of blood cancer, which is a disruption between blood stem cell multiplication and maturation.

The Lund University scientists, led by Jonas Larsson, presented their results March 17 in the journal Cell Reports, in an article entitled “Genome-wide RNAi Screen Identifies Cohesin Genes as Modifiers of Renewal and Differentiation in Human HSCs.” The article describes how a genome-wide RNA interference (RNAi) screen was performed in primary human CD34+ cells. This screen enabled the scientists to identify candidate genes whose knockdown maintained the HSC phenotype during culture.

“A striking finding was the identification of members of the cohesin complex (STAG2, RAD21, STAG1, and SMC3) among the top 20 genes from the screen,” wrote the authors. “Upon individual validation of these cohesin genes, we found that their knockdown led to an immediate expansion of cells with an HSC phenotype in vitro.”

A similar expansion, the authors added, was observed in vivo following transplantation to immunodeficient mice.

“Transcriptome analysis of cohesin-deficient CD34+ cells showed an upregulation of HSC-specific genes,” the authors continued. This finding, the authors asserted, demonstrates that when cohesin is deficient, transcription shifts to a more stem cell–like pattern.

“The research is unique as the study of so many genes alongside one another is unprecedented,” said Dr. Larsson. “In addition, we have used human blood stem cells, which is difficult in itself as it is requires the gathering of a large amount of material.”

Of the 15,000 genes that were tested, the Lund team found around 20 candidates with a strong capacity to affect the balance of growth in the blood stem cells. What was striking was that four of these 20 genes were physically connected through cooperation in a protein complex.

“The discovery showed that this protein complex is crucial and has an overarching function in the growth of the blood stem cells,” emphasized Dr. Larsson.

The cohesin complex acts as a sort of brace that holds different parts of the DNA strand together in the cell. The researchers believe that this allows the cohesin complex to control access to the “on/off switches” in DNA and to change the impulses the blood stem cells receive from various genes, thereby affecting cell division. The blood stem cell either multiplies or matures to become a specialized cell with other tasks.

Independently of the Lund researchers’ discovery, other research in the field of blood cancer has recently identified mutations in exactly the same four genes in patients with various forms of blood cancer.

“This is incredibly exciting! Together with the results from our study, this indicates that the cohesin genes are directly and crucially significant in the development of blood cancer,” exclaimed the study’s lead author, Ph.D. candidate Roman Galeev. “Our findings entail a new understanding of how the expansion of blood stem cells is controlled. Eventually, this can lead to new ways of affecting the process, either to prevent the development of cancer or to expand the stem cells for transplant.”

UNPRECEDENTED PRECISION STUDY IDENTIFIES THE FOUR GENES RESPONSIBLE FOR BLOOD STEM CELL DEVELOPMENT.

  • A genome-wide RNAi screen was performed in primary human CD34+ cells
  • Several cohesin genes were identified as modifiers of renewal and differentiation
  • Cohesin-deficient HSCs show enhanced reconstitution capacity in vivo
  • Cohesin deficiency induces immediate HSC-specific transcriptional programs

Summary

To gain insights into the regulatory mechanisms of hematopoietic stem cells (HSCs), we employed a genome-wide RNAi screen in human cord-blood derived cells and identified candidate genes whose knockdown maintained the HSC phenotype during culture. A striking finding was the identification of members of the cohesin complex (STAG2, RAD21, STAG1, andSMC3) among the top 20 genes from the screen. Upon individual validation of these cohesin genes, we found that their knockdown led to an immediate expansion of cells with an HSC phenotype in vitro. A similar expansion was observed in vivo following transplantation to immunodeficient mice. Transcriptome analysis of cohesin-deficient CD34+ cells showed an upregulation of HSC-specific genes, demonstrating an immediate shift toward a more stem-cell-like gene expression signature upon cohesin deficiency. Our findings implicate cohesin as a major regulator of HSCs and illustrate the power of global RNAi screens to identify modifiers of cell fate.

Figure thumbnail fx1

Human hematopoiesis is maintained by a small number of hematopoietic stem cells (HSCs) that are capable of generating all blood cell lineages at an extremely rapid pace for the entire lifespan of a human being (Orkin and Zon, 2008). HSCs have been studied extensively during the last four decades and are probably the best functionally characterized adult stem cells. However, despite this, the regulatory mechanisms that govern different cellular fate options in HSCs have remained incompletely defined. In particular, it has been challenging to understand the molecular basis of the inherent ability of HSCs to self-renew and preserve their undifferentiated state, which has hampered efforts to expand HSCs ex vivo for therapeutic benefit (Dahlberg et al., 2011). Ex vivo expansion of HSCs would allow for critical improvements of bone marrow transplantation procedures in treatment of malignant and inherited hematological diseases (Chou et al., 2010). Defining the genetic and molecular basis of self-renewal of HSCs is thus important to enhance current cell-therapy strategies, but it is also essential in order to better understand mechanisms behind dysregulated hematopoiesis that may cause leukemia. Genes and pathways balancing cell-fate options between renewal and differentiation in stem cells are often key players in cancer development (Orkin and Zon, 2008).

Thumbnail image of Figure 1. Opens large image

Figure 1

Genome-wide RNAi Screen in Primitive Human Hematopoietic Cells Defines Genes and Pathways Associated with Cancer Progression and Cell Proliferation

(A) Overview of the experimental outline for the primary screen. 60 million cord blood-derived CD34+ cells were transduced with a pooled lentiviral library containing 75,000 shRNAs across six transduction replicates in total. A fraction of the cells were isolated after 72 hr, and proviral inserts were deep sequenced to determine the initial library distribution. Following 20 days of culture, CD34+ cells were magnetically isolated and proviral inserts were sequenced again to determine the changes in distribution for all shRNAs.

(B) Relative distribution of shRNAs following 20 days of in vitro culture, ranked from the most enriched to the most depleted. The y axis shows the average enrichment value across six replicate screens.

(C) Gene ontology analysis for all genes represented by multiple shRNAs in the most enriched (10%) fraction.

(D) KEGG pathway analysis showing strong enrichment for cancer-associated pathways among the top-scoring genes.

See also Figure S1 and Table S1.

We report here on the successful development of a genome-wide RNAi screening approach targeted to primary human hematopoietic stem and progenitor cells to define genes and pathways associated with self-renewal and differentiation. Based on findings from the screen, we implicate the cohesin complex as a crucial regulator of cell-fate decisions influencing self- renewal and differentiation in HSCs both in vitro and in vivo.

These efforts represent a genome-wide RNAi screen targeted to primary human HSPCs. The main limiting factor when performing functional screens in primary human cells is cell number. This obviously becomes even more challenging when rare cell subsets, such as stem and progenitor cells, are studied. Through unique access to cord blood with daily deliveries from several local hospitals, we were able to gather the necessary quantities to perform a screen in enriched primary HSPCs with reasonable coverage (300X).

 

Photo-Receptor Production

Curator: Larry H. Bernstein, MD, FCAP

 

Using Zinc Finger Nuclease Technology to Generate CRX-Reporter Human Embryonic Stem Cells as a Tool to Identify and Study the Emergence of Photoreceptors Precursors During Pluripotent Stem Cell Differentiation

Joseph Collin1, Carla B Mellough1, Birthe Dorgau1, Stefan Przyborski2, Inmaculada Moreno-Gimeno3 and Majlinda Lako1,*

STEM CELLS Feb 2016  34(2), pages 311–321,    http://dx.doi.org:/10.1002/stem.2240

 

The purpose of this study was to generate human embryonic stem cell (hESC) lines harboring the green fluorescent protein (GFP) reporter at the endogenous loci of the Cone-Rod Homeobox (CRX) gene, a key transcription factor in retinal development. Zinc finger nucleases (ZFNs) designed to cleave in the 3′ UTR of CRX were transfected into hESCs along with a donor construct containing homology to the target region, eGFP reporter, and a puromycin selection cassette. Following selection, polymerase chain reaction (PCR) and sequencing analysis of antibiotic resistant clones indicated targeted integration of the reporter cassette at the 3′ of the CRX gene, generating a CRX-GFP fusion. Further analysis of a clone exhibiting homozygote integration of the GFP reporter was conducted suggesting genomic stability was preserved and no other copies of the targeting cassette were inserted elsewhere within the genome. This clone was selected for differentiation towards the retinal lineage. Immunocytochemistry of sections obtained from embryoid bodies and quantitative reverse transcriptase PCR of GFP positive and negative subpopulations purified by fluorescence activated cell sorting during the differentiation indicated a significant correlation between GFP and endogenous CRX expression. Furthermore, GFP expression was found in photoreceptor precursors emerging during hESC differentiation, but not in the retinal pigmented epithelium, retinal ganglion cells, or neurons of the developing inner nuclear layer. Together our data demonstrate the successful application of ZFN technology to generate CRX-GFP labeled hESC lines, which can be used to study and isolate photoreceptor precursors during hESC differentiation. Stem Cells 2016;34:311–321

 

A New Tool for Photoreceptor Production to Treat Vision Loss

     

Review of “Using Zinc Finger Nuclease Technology to Generate CRX-Reporter Human Embryonic Stem Cells as a Tool to Identify and Study the Emergence of Photoreceptors Precursors during Pluripotent Stem Cell Differentiation” from Stem Cells by Stuart P. Atkinson

The production of replacement cells from human pluripotent stem cell (hPSC) sources has great potential for the treatment of certain forms of vision impairment and blindness. The production of functional stem cell-derived retinal-pigmented epithelium (RPE) is already a notable success, although the equivalent success in photoreceptor cell production has so far lagged behind, due partly to the lack of robust human cell surface markers to allow their purification.

To get round this problem, canny researchers from the laboratory of Majlinda Lako (Newcastle University, United Kingdom) have used zinc finger nuclease (ZFN) gene editing technology to create a reporter embryonic stem cell (ESC) line suitable for the enhanced production of photoreceptor cells [1].

The authors targeted a green fluorescent protein (GFP) reporter into the endogenous locus of the Cone-Rod Homeobox (CRX) transcription factor gene which is known to be selectively expressed post-mitotic retinal photoreceptor precursors. The integration of this reporter into hESCs did not negatively affect genomic stability or pluripotency and, following 3D differentiation to form laminated neural retina [2], GFP expression faithfully mimicked the known expression patterns of CRX (See Figure).

In-depth expression analysis of CRX-positive cells then demonstrated the restriction of GFP-CRX to only two cell types within the 90-day differentiation protocol: RECOVERIN-expressing photoreceptor precursors situated in the developing outer nuclear layer of the optic cup and a subpopulation of non-proliferative retinal progenitors. Importantly, the study detected the expression of genes known to be activated by CRX, so suggesting that GFP-targeting does not affect the functionality of the transcription factor.

In conclusion, the authors have created a CRX-GFP-labeled hESC line which can be used to identify, purify, and study photoreceptor precursors during hESC differentiation, in the hope of improving differentiation protocols, discovering cell surface markers, and developing clinically applicable strategies for transplantation. A great tool for those working towards generating treatments for vision impairment and blindness.

References

  1. Collin J, Mellough CB, Dorgau B, et al. Using Zinc Finger Nuclease Technology to Generate CRX-Reporter Human Embryonic Stem Cells as a Tool to Identify and Study the Emergence of Photoreceptors Precursors During Pluripotent Stem Cell Differentiation. STEM CELLS 2016;34:311-321.
  2. Mellough CB, Collin J, Khazim M, et al. IGF-1 Signaling Plays an Important Role in the Formation of Three-Dimensional Laminated Neural Retina and Other Ocular Structures From Human Embryonic Stem Cells. Stem Cells 2015;33:2416-2430.

 

JNK/SAPK Signaling and iPSC

Larry H Bernstein, MD, FCAP, Curator

LPBI

 

JNK/SAPK Signaling is Essential for Efficient Reprogramming of Human Fibroblasts to Induced Pluripotent Stem Cells

Irina Neganova1, Evgenija Shmeleva1, Jennifer Munkley1, Valeria Chichagova1,…, David J. Elliott1, Lyle Armstrongand Majlinda Lako1,*

Stem Cells  4 MAR 2016    http://dx.doi.org:/10.1002/stem.2327

Reprogramming of somatic cells to the phenotypic state termed “induced pluripotency” is thought to occur through three consecutive stages: initiation, maturation, and stabilisation. The initiation phase is stochastic but nevertheless very important as it sets the gene expression pattern that permits completion of reprogramming; hence a better understanding of this phase and how this is regulated may provide the molecular cues for improving the reprogramming process. c-Jun N-terminal kinase (JNK)/stress-activated protein kinase (SAPKs) are stress activated MAPK kinases that play an essential role in several processes known to be important for successful completion of the initiation phase such as cellular proliferation, mesenchymal to epithelial transition (MET) and cell cycle regulation. In view of this, we postulated that manipulation of this pathway would have significant impacts on reprogramming of human fibroblasts to induced pluripotent stem cells. Accordingly, we found that key components of the JNK/SAPK signaling pathway increase expression as early as day 3 of the reprogramming process and continue to rise in reprogrammed cells throughout the initiation and maturation stages. Using both chemical inhibitors and RNA interference of MKK4, MKK7 and JNK1, we tested the role of JNK/SAPK signaling during the initiation stage of neonatal and adult fibroblast reprogramming. These resulted in complete abrogation of fully reprogrammed colonies and the emergence of partially reprogrammed colonies which disaggregated and were lost from culture during the maturation stage. Inhibition of JNK/SAPK signaling resulted in reduced cell proliferation, disruption of MET and loss of the pluripotent phenotype, which either singly or in combination prevented establishment of pluripotent colonies. Together these data provide new evidence for an indispensable role for JNK/SAPK signaling to overcome the well-established molecular barriers in human somatic cell induced reprogramming.

Our research group has a long standing interest in understanding the molecular mechanisms underpinning the induction of pluripotency which may be essential for enhancing the reprogramming process. In this manuscript, we have focused our attention on the c-Jun N-terminal kinase (JNK) signaling, a pathway which has been extensively studied in somatic and cancer cells, but it has been relatively unexplored in human pluripotent stem cells. Through a combination of techniques, we have been able to show that JNK/SAPK signaling is indispensable for overcoming several well described molecular barriers occurring in the initial stage of reprogramming, thus providing for the first time clear insights on the role of this pathway on human somatic cell induced reprogramming.

 

Since 2007, it has been possible to reprogram human somatic cells back to an embryonic stem cell (ESC) like stage via introduction of four transcription factors, namely OCT3/4, SOX2, KLF4, and c-MYC (referred as OSKM; [1]). The reprogrammed cells termed human induced pluripotent stem cells (hiPSCs), akin to human embryonic stem cells (hESCs) are characterized by the ability to proliferate indefinitely and have the potential to give rise to all cell types found in the adult organism [2]. The aforementioned pluripotency factors have also been implicated in the initiation of tumorigenesis in various tissues [3-5] and are considered as potent oncogenes. The risk associated with the introduction of these oncogenes in normal human somatic cells is the likely activation of anti-oncogenic pathways through a process named oncogenic stress which can often result in cell cycle arrest as a means of protection from tumorigenesis [6]. Activation of cell cycle arrest, p53 activation and reduced cellular proliferation have been described as molecular barriers to efficient reprogramming [7-9]. In view of these findings, we hypothesised that transduction of dermal skin (Fibroblasts: Lonza Group Ltd, Basel, Switzerland; Lonza:http://www.lonza.com/) with OSKM would activate oncogenic stress and induce growth arrest thus providing an additional barrier to reprogramming. Hence inhibition of key sensors of this pathway could provide useful targets for removing this barrier and increasing its efficiency.

Stress activated MAP kinase signaling pathways are important mediators of cellular responses to intra- and extracellular signals such as growth factors, hormones, and environmental stresses. These pathways consist of triple kinase cascades comprising the MAP kinases which are phosphorylated and activated by MAP kinase kinases (MKKs) and then further phosphorylated and activated by MAP kinase kinase kinases (MKKKs) [10]. In mammals, three distinct MAP kinase pathways have been identified resulting in activation of ERK, c-Jun N-terminal kinase (JNK) and p38 [10]. One of the key sensors of oncogenic stress is the JNK signaling pathway which responds by phosphorylating and stabilising p53 via its downstream mediator MKK7 [11]. The JNK pathway, also named stress-activated protein kinase pathway (SAPK) is essential for providing a cellular response to extracellular changes such as ultraviolet and reactive oxygen species induced damage, mechanical stress and osmolarity changes. For the JNK/SAPK pathway 14 different MKKs have been described to date [12]. MKK7 exclusively activates JNKs and MKK4 is unique in its ability to phosphorylate and activate two MAP kinase groups: JNKs and p38. Both MKK4 and MKK7 are responsible for phosphorylation of JNK/SAPKs at Tyrosine (Tyr) and Threonine (Thr) residues located at the activation loop. In murine embryonic stem cells (mESCs), MKK4 is shown to phosphorylate JNK/SAPKs at Tyr 185 residue, while MKK7 phosphorylates the Thr 183 residue, and together they cause dual phosphorylation of JNK/SAPKs, thus leading to its optimal activation [13].

Most of the data on JNK/SAPK signaling and activation of its targets has been obtained from work performed in somatic and cancer cells [14]; however in the last few years there have been a number of publications describing the role of this signaling pathway during embryonic development and in ESC function. Some of these have shown that MKK4 and MKK7 null mice die before E.12.5, highlighting the necessity of JNK/SAPK signaling pathway during embryonic development and suggesting that other pathways cannot substitute for MKK4 and MKK7 [15, 16]. Furthermore, JNK1 and JNK2 have been shown to play a negative role in the reprogramming of murine fibroblasts by suppressing Klf4 activity [17]. In contrast, hESCs are characterized by high levels of JNK/SAPK activity which is important for maintenance of pluripotency; however a role for this signaling pathway during reprogramming of human somatic cells has not been described previously and forms the main focus of this manuscript. We report herein that transduction of human fibroblasts with OSKM (both as single and polycistronic Sendai based viruses) induces the activation of JNK/SAPK signaling during the initiation and maturation stage of reprogramming. Downregulation of JNK/SAPK with a specific chemical inhibitor or by RNA interference (RNAi) leads to the emergence of only partially reprogrammed colonies which disaggregate and are lost during the maturation stage of reprogramming. Our data suggest that JNK/SAPK signaling plays an important role in several key processes that are shown to be important during cellular reprogramming namely the induction of mesenchymal to epithelial transition (MET), activation of cellular proliferation as well the maintenance of the pluripotent phenotype. Hence lack of hiPSC colonies and loss of partially reprogrammed cells can be attributed to one or more of these three cellular processes which are tightly regulated by JNK/SAPK signaling.

 

NK/SAPKs Kinases are Activated During the Course of Reprogramming

To understand the role of JNK/SAPKs during the generation of hiPSCs we assessed the expression of JNK1 and JNK2 and their upstream activators MKK4 and MKK7 in two different primary dermal skin fibroblasts (Neonatal/Neo1 and Adult/Ad3), several hiPSCs clones derived therefrom (Fig. 1A, 1B, Supporting Information Fig. 1B) and hESCs (H9). Human ESCs are characterised by high levels of JNK/SAPK activity which has been shown to be important for maintenance of the pluripotent stem cell state [19]. In accordance with this, we found the highest levels of mRNA JNK1 expression in hESCs when compared to several hiPSCs clones derived from two adult fibroblast samples (Fig. 1A, 1B, Supporting Information Fig. 1B); however these differences were not maintained at the protein level across the iPSC clones examined (Fig. 1B). We also observed that neonatal fibroblasts had lower expression of all four kinases examined when compared to adult fibroblasts (Fig. 1A, 1B). These differences were in part maintained in the respective hiPSC lines with the adult derived hiPSC clones showing higher expression of JNK1 when compared to neonatal derived hiPSCs at both transcript and protein level (Fig. 1A, 1B, Supporting Information Fig. 1A, 1B).

http://onlinelibrary.wiley.com/store/10.1002/stem.2327/asset/image_n/stem2327-fig-0001.png

Figure 1. JNK/SAPK signaling is activated during the initiation and maturation stage of reprogramming. (A): Real-time PCR analysis of MKK4, MKK7, JNK1and JNK2 expression in H9 (p36), neonatal human fibroblasts (Neo1), adult human fibroblasts (Ad3) and human induced pluripotent stem cell (hiPSC) generated therefrom (Neo1cl1iPSC and Ad3cl1iPSC, respectively). Data represent relative expression to GAPDH and normalized against H9. Data are presented as mean ± SEM. (B): Western blot analysis showing expression of MKK4, MKK7, JNK/SAPKs, pSAPK(Thr183/Tyr185) and pSAPK (Ser63) in hESC (H9), human neonatal fibroblasts (Neo1), human adult fibroblasts (Ad3) at Day 0 and hiPSC derived therefrom (Neo1cl1iPSC and Ad3cl1iPSC, respectively). (C): Western blot analysis of protein expression of MKK4, MKK7, JNK/SAPKs, pSAPK(Thr183/Tyr185) and pSAPK (Ser63) during the reprogramming of Neo1 fibroblasts. Days of transduction are indicated as D3—Day 3 and so on, correspondently. GAPDH served as loading control. Images are representative of at least three independent experiments. (D): Flow cytometric analysis of the distribution of TRA1-60+/CD44-, TRA1-60+/CD44 + and TRA1-60-/CD44 + populations during time course of reprogramming of neonatal (Neo1) and adult fibroblasts (Ad3). This is a representative example of at least three independent experiments. (E): Neo1 fibroblasts undergoing reprogramming were sorted in all four different subpopulation by FACS at day 13 of reprogramming and replated. The resulting colonies were stained by alkaline phosphatase at day 28. TRA1-60 + /CD44– cells formed numerous AP + colonies (upper panel), while TRA1-60+/CD44 + cells (lower panel) generated partly reprogrammed colonies. (F): Representative examples of flow cytometric analysis showing the distribution of pSAPK + cells among TRA1-60+/CD44-, TRA1-60+/CD44 + and TRA1-60-/CD44 + populations at day 10 of reprogramming of Neo1 fibroblasts. (G): Graphic representation of the percentage of p-SAPK + cells at different cells populations (TRA1-60+/CD44-, TRA1-60+/CD44 + and TRA1-60-/CD44+) during the reprogramming of Neo1 fibroblasts assessed by flow cytometric analysis. Data are presented as mean ± SEM. Abbreviations: FACS, Fluorescence-activated cell sorting; hESC, human embryonic stem cell; iPSC, induced pluripotent stem cell; JNK, c-Jun N-terminal kinase; MKK, MAP kinase kinases; SAPK, stress-activated protein kinase.

Transduction of OSKM caused a significant increase in JNK1 expression in adult fibroblasts and a dual increase in JNK1 and JNK2 expression in neonatal fibroblasts as early as day 3 of reprogramming (Fig. 1A-1C, Supporting Information Fig. 1A). This was followed by an increase in expression of pSAPK [Tyr 185/Thr 183SAPK)] from day 6 to day 21 in neonatal fibroblasts (Fig. 1B, 1C) and from day 12 to day 21 in adult fibroblasts (Fig. 1B, Supporting Information Fig. 1A). The expression of pSAPK (Ser63) was increased as early as day 3 continuing till day 21 of reprogramming in both neonatal and adult fibroblasts (Fig. 1B, 1C, Supporting Information Fig. 1A). Together these data suggest an increased JNK/SAPK activity during the initiation and maturation stage of reprogramming.

To determine how the four transcription factors (OSKM) individually contribute to JNK/SAPK activation during reprogramming, we performed transduction with each single factor in neonatal fibroblasts and substituted the rest of the factors with an equivalent number of control-GFP virus particles (Supporting Information Fig. 1C). Transduction withOCT4, KLF4 and c-MYC contributed mostly to an increase in JNK2 expression, while introduction of SOX2 increased both JNK1 and JNK2 expression with a preference for JNK1. Transduction with control viral particles alone did not lead to increased JNK1/JNK2 expression or their phosphorylated form (data not shown), indicating that activation of JNK/SAPK pathway during reprogramming is not related to the transduction event, but specifically to introduction of OSKM in somatic cells.

To further confirm the increase in p-JNK/SAPK expression at a cellular level, we used flow cytometric analysis as described previously [20]. This enabled us to follow three cellular subpopulations during the course of reprogramming; fully reprogrammed cells (TRA-1-60+CD44-), partially reprogrammed cells (TRA-1-60+CD44+) and fibroblasts (TRA-1-60-CD44+; Fig. 1D, 1E). pSAPK was expressed in all three subpopulations (Fig. 1F, 1G). It is interesting to note that the partially reprogrammed cells showed the highest percentage of pSAPK + expressing cells; however this declined toward the end of the reprogramming period (Fig. 1G). Furthermore, the percentage of pSAPK expressing cells increased in the fully reprogrammed subpopulation from day 14 to day 18 (Fig. 1G) then decreased by day 28, corroborating the Western blotting analysis (Fig. 1B, 1C, Supporting Information Fig. 1A). We obtained the same profile of emergence of the three cellular subpopulations and the same trend of pSAPK activation (Supporting Information Fig. 2A, 2B) upon application of a polycistronic Sendai vector (Cytotune 2.0), demonstrating that activation of JNK/SAPK is independent of hiPSC transduction protocol. Together these data suggest an important role for the activity of JNK/SAPK in fully reprogrammed cells during the maturation stage of reprogramming.

 

Inhibition of JNK/SAPK Activation with Chemical Inhibitors Causes Disaggregation and Loss of hiPSC Colonies During Maturation Stage

To test the function of JNK/SAPKs in generation of hiPSCs we used a small molecule SP600125, which has been shown to significantly inhibit expression of all three JNKgenes namely JNK1, JNK2, and JNK3 [21]. Our data show that 5 µM SP600125 (named SAPKi thereafter) is sufficient to downregulate the expression of JNK1 and JNK2 in hESCs (Fig. 2A) corroborating previous data published in mouse ESCs [22]. To investigate the impact of JNK/SAPK inhibition in the reprogramming process, we used SAPKi for 24 hours at different time points as summarized in Figure 2B and Supporting Information Figure 3. Our results indicate that application of SAPKi had a detrimental effect on hiPSC generation regardless of the time of application, for no hiPSC colonies were obtained at the end of the transduction period from either adult or neonatal fibroblasts (Fig.2F-2J, Supporting Information Fig. 3). In all cases, flow cytometric analysis indicated a significant decrease in the percentage of emerging hiPSCs (TRA-1-60+CD44-; Fig. 2B-2D). Furthermore, SAPKi application affected the TRA1-60 + populations specifically (partially reprogrammed and fully reprogrammed distinguished by presence or absence of CD44 respectively, Fig. 2C, 2D) as no reduction in the TRA-1-60-CD44 + population of dermal skin fibroblasts was observed (Fig. 2D). In control cultures (treated with DMSO vehicle only) we observed morphological changes (cells rounding up, starting to group together and showing morphology typical of pluripotent stem cells) which led to the emergence of hiPSC colonies with clear compact edges as early as day 16 (Fig. 2E, Supporting Information Fig. 3). In SAPKi treated cultures, we observed formation of colonies with morphology typical of partially reprogrammed cells; however most of these started to disintegrate as early as day 16 (Fig. 2E, 2D) and by day 18 all these partially reprogrammed colonies were lost from the culture (Fig. 2E).Thus, formation of hiPSCs colonies showing morphological features of pluripotent stem cells was not observed in the presence of SAPKi. Assessment of total colony number at the mid-point (day 16) as well as hiPSC colonies at day 28 (identified by alkaline phosphatase staining) corroborated the morphological and flow cytometric analysis and indicated no viable hiPSC colonies upon application of SAPKi (Fig. 2F, 2J), suggesting that JNK/SAPK activity is important for generation of hiPSCs colonies.

http://onlinelibrary.wiley.com/store/10.1002/stem.2327/asset/image_n/stem2327-fig-0002.png

Figure 2. Application of JNK/SAPKs inhibitor (SP60015) abrogates human induced pluripotent stem cell generation. (A): Western blot analysis of JNK/SAPKs downregulation by SP60015 (SAPKi) in hESCs (H9). GAPDH used as a loading control. Images are representative of at least three independent experiments. (B): Schematic representation of inhibitor application (SAPKi) at day 8 during the reprogramming process. (C): Graphic representation of flow cytometric analysis data (day 13) indicating a significant impact of SAPKi application (applied at day 8 for 24 hours) on the percentage of TRA1-60+/CD44- cells. Results are presented as mean ± SEM (n = 3). (D): Graphic representation of flow cytometric analysis data (day 13) demonstrating a significant impact of SAPKi application on TRA1-60+/CD44- and TRA1-60+/CD44 + subpopulations generated during reprogramming of Neo1 fibroblasts. Results are presented as mean ± SEM (n = 3). (E): Phase–contrast observation showing the morphology of partially reprogrammed colonies arising during the reprogramming of Neo1 and Ad3 fibroblasts treated with DMSO or SAPKi for 24 hours at day 8, scale bars = 100 µm. (F): Graphic representation of total colony numbers at day 16 and 28 of reprogramming in SAPKi and DMSO treated Neo1 and Ad3 fibroblasts. Data are presented as mean ± SEM (n = 3). (J): Alkaline phosphatase staining at day 28 confirmed the absence of true AP + colonies from neonatal and adult fibroblasts undergoing reprogramming and treated with SAPKi at day 8 of transduction for 24 hours. (C, D, F): *, p < .05. Abbreviations: AP, Alkaline phosphatase; DMSO, Dimethyl sulfoxide; FCM, Flow Cytometric and Morphological Analysis; JNK, c-Jun N-terminal kinase; SAPK, stress-activated protein kinase.

 

MKK4, MKK7 and JNK1/SAPK1 are Indispensable for hiPSC Generation

Impact of JNK/SAPK Downregulation on Pluripotent Stem Cells

Impact of JNK/SAPK Downregulation on Cellular Proliferation and Cell Cycle Regulation in Somatic Cells

Importance of JNK/SAPK Signaling for the MET

MET is an important process during somatic cell reprogramming and is orchestrated by the suppression of pro-epithelial to mesenchymal transition (EMT) signals and activation of an epithelial signature in reprogrammed cells [27]. During this process, two of the key reprogramming factors SOX2 and OCT4 suppress the EMT mediator SNAIL, while KLF4 induces epithelial gene expression including E-cadherin [27]. Ultrastructural visualization of this process has shown that until day 6 of reprogramming, human fibroblasts retain their mesenchymal characteristics. The MET occurs between days 6 and 12 and this is followed by maturation of the epithelial phenotype from day 12 to day 18 [28]. Although traditionally JNKs have been thought to be activated in response to apoptotic, proliferation and stress signals, more recently it has been shown that they can also act as cell junction regulators [29] and can be involved in cell migration which is tightly linked to dynamic formation as well as dissolution of cell-cell junctions[29, 30]. Given the importance of MET in hiPSC formation we asked whether inhibition of JNK/SAPK signaling leads to loss of E-cadherin expression-dependent adhesion, followed by loss of cell-to-cell communication resulting in disintegration of partially reprogrammed colonies and their loss from culture. Immunocytochemical analysis of OSKM treated control fibroblasts indicated formation of a bright network of E-cadherin and β-catenin plasma membrane staining in TRA-1-60 positive cells (Fig. 6A, 6B), indicating formation of adherent junctions between the cells. In contrast, E-cadherin and β-catenin staining was observed in very few of the cells present in the partially reprogrammed TRA-1-60 positive colonies obtained from reprogramming of JNK1 shRNA treated fibroblasts (Fig. 6A, 6B). Furthermore, the bright E-cadherin and β-catenin networks which ensure the cell-cell adhesion and communication were missing in reprogrammed JNK1 shRNA treated fibroblasts. Assessment of N-cadherin expression, a marker of fibroblasts that fail to undergo MET and further convert into hiPSC [31] indicated a higher number of expressing cells in JNK deficient cells (Fig. 6C), further supporting the disruption of MET during the reprogramming of JNK deficient samples. Quantitative RT-PCR analysis indicated downregulation of epithelial marker (E-cadherin) and upregulation of mesenchymal markers (SNAIL, N-cadherin, TWIST, VIMENTIN, ZEB1 and SLUG) under both Cytotune 1 and 2 Sendai reprogramming (Fig. 6D, Supporting Information Fig. 8), further supporting the disruption of MET during the reprogramming of JNK deficient samples.

 

In this manuscript, we investigated the expression of key components of JNK/SAPK signaling and found that this pathway is activated as early as day 3 of reprogramming with both partially reprogrammed cells (TRA-1-60+CD44+) and fully reprogrammed cell populations (TRA-1-60+CD44-) showing an increase in the number of pSAPK expressing cells until day 18, regardless of the reprogramming protocol used. In contrary to our first expectations, we found that inhibition of JNK/SAPK signaling pathway either by chemical inhibitors or RNAi mediated downregulation of MKK4, MKK7 or JNK1 resulted in the complete abrogation of hiPSC colony formation and emergence of partially reprogrammed cells which were lost during the maturation stage of reprogramming. Together these data highlight the importance of this signaling pathway in human somatic cell induced reprogramming which to the best of our knowledge has not been reported previously. In contrast to our findings, it has been reported that Jnk1-/- and Jnk2-/- murine fibroblasts exhibit a greater potency for reprogramming due to increased Klf4 activity which is phosphorylated by Jnk1 and Jnk2 through inhibitory phosphorylation at Thr residues 224 and 225 [17]. These differences in the role of JNK signaling during the reprogramming of mouse versus human somatic cells can reflect different modes of actions for this pathway in each species; however this needs to be investigated further. We were also surprised to see the lack of functional redundancy between various components of key signaling molecules involved in JNK signaling as downregulation of MKK4, MKK7 and JNK1 in fibroblasts led in all cases to complete absence of hiPSC colonies. Notwithstanding this, we would like to point out that all single component downregulation by RNAi led to further changes in the expression of additional components of this pathway (e.g., MKK4 shRNA resulted in downregulation of MKK7 and JNK1) and/or parallel pathways such as p38, thus outlining the complexity of regulation of this pathway which has been reported previously and must be taken into account when investigating the function of separate signaling components [32-34]. Furthermore, we observed some differences in the expression of key components of JNK/SAPK signaling between neonatal and adult fibroblasts as well as their response to JNK/SAPK inhibition which indicates differences in the mode of operation of this pathway in these two cell types. Nevertheless, the activation window of JNK/SAPK signaling during the reprogramming process and the outcome of JNK/SAPK downregulation in the reprogramming of both cell types were very similar, suggesting that at least the JNK/SAPK functions related to reprogramming are likely to be conserved in both cell types. Human cord blood and hair follicle epithelial cells have emerged as new sources of somatic cells for reprogramming because of their accessibility. Recent reports suggest that JNK/SAPK signaling is required in cord blood cells to prevent the onset of senescence [35], while regulating apoptosis in hair follicle epithelial cells [36]. While our experiments have only been performed in dermal skin neonatal and adult fibroblasts thus preventing to make sound conclusions about the applicability of our findings in other cell types, the well-known role of JNK/SAPK signaling in maintaining cell survival and proliferation may suggest a critical role for this pathway during the reprogramming process; however this has to be further investigated experimentally.

The functions of JNK/SAPK signaling are complex and encompass a wide range of cellular processes which yield different outcomes in specific cell types [37]. Given the increased expression of key components of JNK/SAPK signaling during the initiation and maturation phases of reprogramming, we sought to identify its involvement in several processes shown to be important during this time window namely induction of MET [38], silencing of tumor suppressor and cell cycle inhibitor genes [8], induction of apoptosis [39] and induction of cell proliferation [40, 41]. Consistent with previous reports [42], we found that inhibition of JNK signaling did not have any impact on the apoptosis of fibroblasts undergoing reprogramming (data not shown); hence the link between apoptosis induction and JNK signaling can be excluded. JNK signaling has been shown to be required for the expression of c-Jun and JunD, two essential components of the AP1 transcription factor which is essential for cell proliferation and prevention of senescence often associated with impaired JNK signaling [43]. Despite repeated investigations, we did not observe expression of senescence associated β-galactosidase in fibroblasts with deficient JNK signaling achieved through chemical inhibition or RNAi. Neither did we see an increase in the expression of cell cycle inhibitors including p15, p16, p19 which have been linked to onset of senescence in various cell types [44, 45]. These findings could reflect differences in JNK outcomes in vivo versus in vitro experiments (tissue culture) which have been reported previously, or the time lag that is needed from cell cycle arrest to detectable expression of these markers. Despite lack of senescence marker expression, we observed a significant decrease in cellular proliferation, increased percentage of cells in G1 phase of the cell cycle at the expense of S phase and reduced expression of key cell cycle components involved in G1/S transition (such as CDK6, CDK2, CDK1, CCDN1) and S phase progression and G2/M transition (e.g., CCNB1). It is important to note that such expression changes were specific for each component of the JNK signaling pathway downregulated; however in all cases simultaneous downregulation of at least one CDK and one partnering Cyclin, an event that has been shown to be important for efficient reprogramming [40] was observed. These findings were further corroborated by decreased expression of cellular proliferation markers c-Jun, E2F2 and ATF2 in all three shRNA treated samples consistent with previous reports indicating an important role for MKK4, MKK7 and JNK1 for cell cycle progression [16, 46]. High cellular proliferation rate akin to ESC state is an important early event for cellular reprogramming [40]. This leads us to suggest that suppressed cellular proliferation and cell accumulation at the G1 phase (both known as reprogramming barriers; [47]) at the onset of reprogramming of JNK1, MKK4 and MKK7 deficient neonatal and adult fibroblasts is a key reason for the complete lack of hiPSC observed during reprogramming of these samples.

The efficiency of reprogramming can be promoted by the onset of epithelial expression markers concomitantly with the repression of mesenchymal markers in cells undergoing reprogramming during the 6th until the 12th day of reprogramming, known as initiation phase [48, 49]. This is precisely the window during which the JNK signaling is activated; hence we asked the question of whether MET transition is affected in JNK deficient cells. Our data suggest that while control cells showed well organized TRA-1-60 + colonies characterized by plasma membrane staining of E-cadherin and β-catenin indicating formation of adherent junctions typical of epithelial cells, JNK deficient cells displayed a reduced percentage of cells expressing these markers at both cellular and mRNA levels, which suggests that fewer cells are able to undergo MET transition, thus leading to inefficient reprogramming. Furthermore, the cellular networks that guarantee cell-cell communication while present and well organized in control cells were lacking in JNK/SAPK deficient fibroblasts. It has been suggested that expression of E-cadherin and the presence of intact adherent junctions are essential for maintenance of pluripotency in hESC by ensuring access to critical autocrine signals and by promoting cell-cell exchange of signals through the gap junctions [49, 50]. In this context, it is interesting to note that all colonies that emerged during reprogramming of JNK/SAPK deficient fibroblasts were partially reprogrammed and completely disaggregated and subsequently lost during the maturation stage of reprogramming thus leading us to suggest that deficient JNK/SAPK signaling followed by impaired cell to cell contact is likely to be one of the causative factor that counts for the partially reprogrammed phenotype and for the loss of colonies.

Our inhibition experiments were performed during the initiation stage of reprogramming. In all cases despite the time of JNK/SAPK downregulation we obtained no hiPSC colonies. However, we did not perform JNK/SAPK downregulation studies at the stabilization stage where hiPSC colonies are present and continue to grow and develop. There were two main reasons behind this decision: (1) JNK/SAPK activation occurs during the initiation and maturation stage and shows a drop during the stabilization stage and (2) our data presented in this manuscript together with published reports indicate loss of pluripotency in hESCs upon JNK downregulation [19], which would suggest that downregulation of JNK/SAPK signaling after the emergence of hiPSC colonies would result in their differentiation and thus provide a further push toward loss of true bona fide hiPSC colonies.

 

Together our data indicate an increase in JNK/SAPK activity during the initiation and maturation phases of reprogramming regardless of the reprogramming protocol and an indispensable role for the generation of hiPSC colonies. Furthermore, we have shown that inhibition of JNK/SAPK signaling results in reduced cell proliferation, disruption of MET and loss of pluripotent phenotype which either singly or in combination prevent establishment of pluripotent colonies as shown in the summary (Fig. 7).

http://onlinelibrary.wiley.com/store/10.1002/stem.2327/asset/image_t/stem2327-fig-0007-t.gif

 

Figure 7. Schematic summary showing the impacts of MKK4, MKK7 and JNK1 signaling on hiPSC generation. Abbreviations: hiPSC, human induced pluripotent stem cell; JNK, c-Jun N-terminal kinase; MET, mesenchymal to epithelial transition; MKK, MAP kinase kinases; SAPK, stress-activated protein kinase.

 

sjwilliamspa commented on JNK/SAPK Signaling and iPSC

JNK/SAPK Signaling and iPSC Larry H Bernstein, MD, FCAP, Curator LPBI JNK/SAPK Signaling is Essential for …

This seems like a resulting effect rather than an initial event as it would have been better to use a JNK isoform Knockdown or knockout to determine JNK/STAT requirement. However would be interesting to see if inhibitor washout would reverse phenotype then cold control the process better. JNK activation has been linked to certain tumorigenesis including leukemias as well as breast ovarian and some myelodysplastic syndromes.

L-Form Chirality of DNA Nucleotides

Author: Danut Dragoi, PhD

 

In a paper titled “Chiral purity of nucleotides as a necessary condition of complementarity”, see link in here, the question about the role of chiral purity (homochirality) of nucleotides in the formation of complementary replicas is been discussed. A qualitative answer to this question can be obtained from molecular models constructed to simulate the chiral defect in the polynucleotidic chain. It shows the necessity of homochirality of nucleotides for the complementarity preservation.

As we know living cells have  the natural amino acids in  the L (levogir) form, but not D form (dextrogir). Synthetic procedure to make amino acids produces both L and D forms, so they coexist in a mixture 50/50 percents, called racemic state. Within the living cells the situation is different, some special synthesis is occurring with high precision. For example DNA double helix strands, A-DNA and B-DNA have D chirality, see link in here. The rare form Z-DNA has the opposite chirality and for this reason is not included in this posting.

It s interesting to note that the sugar structure in each DNA strand has D chirality.  The sugar within the DNA strand is optical active that gives the chirality character of the DNA.

The twisted structure of the DNA suggests to make a mechanical  model that uses the effect of torsion of both DNA strands in equilibrium with a Left twist in each nucleotide. For this reason I considered a  mechanical model, see picture below, where the white vertical bands are two light ribbons of paper connected with small strands of paper whose ends are Left twisted at 180 degrees. After assembling, the system was freed of any mechanical constraints, so that the entire system took shape of the D (right) double helix as expected.

Paper DNA Photo

Image SOURCE: Danut Dragoi, the author of this Post

Since the nucleotides that are the four codons, A, T, C, and G, are related with the production of the 20 natural amino acids, we can say that the two letters association, AT, and GC (the nucleotides), preserve the chirality L. The picture below shows schematically an example  Arginine amino acid produced by Adenine, Guanine, and Adenine.

A-CODON

Image SOURCE: http://reasonandscience.heavenforum.org/t2057-origin-of-translation-of-the-4-nucleic-acid-bases-and-the-20-amino-acids-and-the-universal-assignment-of-codons-to-amino-acids

Summary

We can derive the chirality  of a complex ensemble of molecules by knowing the chirality of the components. The rare case of Z-DNA, in which the two DNA strands have a wavy configuration, requires a separate analysis.

REFERENCES

http://onlinelibrary.wiley.com/store/10.1016/0014-5793(86)80036-9/asset/feb20014579386800369.pdf;jsessionid=F631F1ABFD1BAFF62C11D3ECEC9EEBB4.f04t02?v=1&t=iltzzvnl&s=674d6afafa94dc4226d0dd005dc50f9839126e66&systemMessage=Wiley+Online+Library+will+be+unavailable+for+up+to+3+hours+on+Saturday+19th+March+2016+from++11%3A00-14%3A00+GMT+%2F+07%3A00-10%3A00+EDT+%2F+19%3A00-22%3A00+SGT+for+essential+maintenance.++Apologies+for+the+inconvenience.

https://books.google.com/books?id=ahvA1IWjIGIC&pg=PA114&lpg=PA114&dq=DNA+double+helix+strands+has+D+chirality&source=bl&ots=DTFNLdBpAO&sig=qVHxI_W6xISF3n8v57TF2VAJv40&hl=en&sa=X&ved=0ahUKEwiZxZWkyMLLAhXEKWMKHa2JBzMQ6AEIQjAE#v=onepage&q=DNA%20double%20helix%20strands%20has%20D%20chirality&f=false

 

SOURCES

http://onlinelibrary.wiley.com/doi/10.1016/0014-5793(86)80036-9/pdf

http://www.encyclopedia.com/topic/amino_acid.aspx

http://www.phschool.com/science/biology_place/biocoach/bioprop/landd.html

http://reasonandscience.heavenforum.org/t2057-origin-of-translation-of-the-4-nucleic-acid-bases-and-the-20-amino-acids-and-the-universal-assignment-of-codons-to-amino-acids

 

 

 

Pharmaceutical Biology: Top Keynote Speakers You Should Look Out For

Guest Author: Samantha Thorenson

 

The Top Keynote Speakers You Should Look Out For in the Field of Pharmaceutical Biology

When selecting speakers for an event, it’s important to find those who are knowledgeable about the latest developments in pharmaceutical biology, especially in regards to specific issues or conditions. However, these speakers must also be engaging and offer something of value to their listeners to draw people in to the speaking event. Several speakers have developed a reputation in this field which makes them the top choices for many organizations and special events.

Scott Gottlieb

Dr. Gottlieb is an MD, who has a longstanding career in the field and is recognized as an expert in health policy. He was the FDA Deputy Commissioner for Medical and Science Affairs from 2005 to 2007. He has served in other capacities for the FDA, including as the Senior Advisor for Medical Technology to the Commissioner. He has been asked to give testimony on regulatory issues before both the U.S. Senate and House of Representatives. Articles he has written on health policy have appeared in such prestigious publications as The New York Times and The Wall Street Journal, along with numerous medical journals. Dr. Gottlieb currently serves on several boards, including the Leukemia and Lymphoma Society and the New York University School of Medicine.

John Avellanet

John Avellanet is a businessman, author and entrepreneur in the field of pharmaceutical regulations. He was awarded the title of Best of Business Services from the Small Business Commerce Association in 2009 and 2011. He has developed, implemented and managed multiple compliance systems for the FDA and other organizations. Recently, he was a co-author for the book, Pharmaceutical Regulatory Inspections. He also wrote Get to Market Now! Turn FDA Compliance into a Competitive Ede in the Era of Personalized Medicine. Mr. Avellanet also has an independent consulting and training firm, which is Cerulean Associates LLC.

Richard A. Lindberg

Dr. Lindberg is a Ph.D. and Executive Director and Head for the Centers for Therapeutic Innovation-California at Pfizer. In his position, he is responsible for developing and managing research sites in San Diego and San Francisco and works with universities and other institutions. He works with UCSD, UCSF and Sanford-Burnham Medical Research Institute currently in new collaboration efforts to move basic scientific information into Phase 1 clinical trials. He has been the co-author of more than 70 patents and scientific articles.

Dr. Mao Mao

Dr. Mao Mao is the Research Fellow at Pfizer Oncology Research. In addition, he is the President of Asian Cancer Research Group, Inc. which is a not-for-profit organization that was established by Pfizer, Merch, and Eli Lilly. He coordinated collaborations with various universities and other academic institutions to promote cancer therapy in the Asia Pacific region. In addition to his extensive work in cancer therapy and testing, Dr. Mao Mao has invented over ten patent applications and has had numerous articles published in medical journals. He was also one of the founding members for the National Human Genome Center in Shanghai.

Sources:

http://www.aei.org/scholar/scott-gottlieb/

http://ceruleanllc.com/about/john-avellanet/

http://sabpa.org/html/the-12th-annual-symposium-on-bio-pharmaceuticals-speakers/

 

SOURCE

From: Samantha Thorenson <samantha@titaniumsuccess.com>

Reply-To: Samantha Thorenson <samantha@titaniumsuccess.com>

Date: Monday, March 14, 2016 at 4:19 PM

To: Aviva Lev-Ari <AvivaLev-Ari@alum.berkeley.edu>

Subject: Re: Leaders in Pharmaceutical Business Intelligence

Bad News this Week for Biotech Deals?

 

Curator: Stephen J. Williams, Ph.D

 

Last week in biotech ( 3/7-3/11/2016) had a plethora of disappointing stories related to biotech drug development and hits to biotech investing and VC.  Since October of 2016 the biotech index has lost 35% to today (see Biotech ETFs Hit 52-Week Lows: Time to Buy?) however were the hit back in October a signal of some of the listed events below (as shown on Biospace News) and includes:

  •  an long-time biotech startup with failure of mesothelioma trial who has struggled in the past
  • multiple clinical trial failures forces the de-listing of a NASDAQ company (other biotechs this year had similar problems)
  • more problems with drug development for Duchenne’s Muscular Dystrophy

GlaxoSmithKline dumps Five Prime’s cancer drug in the midst of Phase I

March 11, 2016 | By Damian Garde

GSK gave Five Prime a 180-day notice that it’s nixing its license to the company’s FP-1039, which is designed to block the spread of cancer by interrupting protein signaling. The decision follows GSK’s January move to stop developing FP-1039 in squamous non-small cell lung cancer due to the rise of immuno-oncology therapies from Merck ($MRK), Bristol-Myers Squibb ($BMY) and others, citing a “change in treatment paradigms.”GlaxoSmithKline ($GSK) is cutting ties with Five Prime Therapeutics’ ($FPRX) in-development cancer therapy, backing out in the middle of a mesothelioma trial.

Now GSK is set to abandon a drug it inherited through its $3 billion acquisition of Human Genome Sciences in 2012, leaving Five Prime to go it alone in an ongoing Phase Ib study testing FP-1039 against mesothelioma. Five Prime said it plans to work with GSK to complete enrollment in the study, adding that it “continues to be encouraged” by the drug’s potential in mesothelioma.

Embattled Bay Area XOMA  (XOMA) Terminates Gevokizumab Trials, Slashes Headcount by 50%

3/11/2016 6:39:17 AM

March 11, 2016
By Alex Keown, BioSpace.com Breaking News Staff

BERKELY, Calif. – Troubled XOMA Corp. (XOMA) is terminating half of its workforce after a late-stage failure of its experimental drug gevokizumab for treatment of pyoderma gangrenosum, the San Francisco Business Times reported this morning.

Following the announcement, Xoma’s stock is down this morning about 5 percent, trading at 91 cents per share as of this writing.

Xoma said it is interested in divesting itself of gevokizumab. In a statement, the company said several companies have approached Xoma about acquiring the drug. Gevokizumab binds to interleukin-1 beta (IL-1 beta), a pro-inflammatory cytokine. Xoma said it will make all information about the drug and study information available to potential buyers. Gevokizumab has had a troubled history with Xoma. The company has halted several trials with the drug for various diseases, including diabetes and a blinding eye disease, the Times reported. In 2014, Xoma was forced to stop testing gevokizumab as an arthritis treatment after the drug did not show significant benefit against placebo after a six-month period.

Struggling Eleven Biotherapeutics (EBIO) Gets Delisting Notice from Nasdaq After Back-to-Back Clinical Trial Failures

3/10/2016 6:07:38 AM

March 10, 2016
By Mark Terry, BioSpace.com Breaking News Staff

With one piece of bad news after another, Cambridge, Mass.-based Eleven Biotherapeutics Inc. (EBIO) filed a Form 8-Kwith the U.S. Securities and Exchange Commission, addressed a delisting notification it received from the Nasdaq on Mar. 3.

The Nasdaq informed the company that its stock dropped below $1 a share, and that the stockholder equity didn’t comply with the $5,000,000 minimum stockholders’ equity requirement. As a result, it has 180 days to comply with Nasdaq rules.

On Jan. 10, the company announced that its Phase III clinical trial of EBI-005 (isunakinra) for severe allergic conjunctivitis did not meet its primary endpoint.

In May 2015, the company reported that its drug, EBI-005, for moderate to severe dry eye disease, failed to prevent damage to the cornea or reduce eye pain in comparison to the control group.

In a January statement, Abbie Celniker, president and chief executive officer of Eleven Biotherapeutics, said, “We are disappointed that isunakinra failed to meet its primary endpoint, and based on these overall results we see no immediate path forward in allergic conjunctivitis. Our efforts will be focused on submitting an investigational new drug application (IND) for EBI-031 in diabetic macular edema in the first half of 2016.”

EBI-031 was designed for intravitreal delivery using the company’s AMP-Rx platform. The drug blocks both free IL-6 and IL-6 complexed to the soluble IL-6 receptor (IL-6R). The compound is being developed to treat diabetic macular edema (DME) and uveitis.

DMD Setback Prompts Sarepta (SRPT) to Shutter West Coast Location and Consolidate to Massachusetts, 30 Jobs Gone

3/9/2016 6:13:13 AM

March 9, 2016
By Mark Terry, BioSpace.com Breaking News Staff

Cambridge, Mass.-based Sarepta Therapeutics (SRPTannounced yesterday that it was shuttering its research-and-development manufacturing facility in Corvalis, Ore. Most of the employees there are expected to move to Sarepta’s facilities in Andover and Cambridge, Mass. About 30 people are expected to be laid off.

On Jan. 21, Sarepta announced that, with an impending snowstorm on the east coast, the U.S. Food and Drug Administration (FDA)’s meeting to review the company’s New Drug Application (NDA) for eteplirsen to treat Duchenne Muscular Dystrophy (DMD) was postponed.

DMD is a muscle wasting disease caused by mutations in the dystrophin gene. The disease is progressive and generally causes death in early adulthood. Complications include serious heart or respiratory-related problems. It mostly affects boys, about 1 in every 3,500 to 5,000 male children.

On Jan. 15, an FDA advisory committee decided to reschedule the meeting, at which point a recommendation or approval decision will be made. That meeting of the Peripheral and Central Nervous System Advisory Committee has not been rescheduled yet, but Sarepta believes it will be prior to May 26, which is the PDUFA date. The Prescription Drug User Fee Act (PDUFA) is a law that allows the FDA to collect an application fee from drug companies when an NDA or Biologics License Application (BLA) is submitted.

The DMD drug arena has been fraught with failures and bad news this year. San Rafael, Calif.-based BioMarin Pharmaceutical Inc. (BMRN)’s application for its DMD drug Kyndrisa (drisapersen) was turned down by the FDA on Jan. 15. The FDA argued that Kyndrisa didn’t show enough benefit.

On Jan. 25, Cambridge, Mass.-based Akashi Therapeuticsannounced that it had halted its DMD trial for HT-100 after one of its patients developed serious, life-threatening health problems. In that DMD is a serious, life-threatening health problem in itself, it’s not clear if the patient’s problems are directly related to the drug. The patient was receiving the highest dose in the HALO trial, while others in the trial with lower doses were not showing adverse side effects.

 

Brookings Papers on Economic Activity (BPEA): Wealth and Income Concentration is rising by about half as much as previously thought

Reporter: Aviva Lev-Ari, PhD, RN

 

 

SOURCE

From: “Janice Eberly and Jim Stock, Brookings Institution” <economicstudies@brookings.edu>

Reply-To: <economicstudies@brookings.edu>

Date: Monday, March 14, 2016 at 1:40 PM

To: Aviva Lev-Ari <AvivaLev-Ari@alum.berkeley.edu>

Subject: Challenging Piketty, a “Shadow Stimulus,” and other BPEA Findings

Read new research from the Brookings Papers on Economic Activity.
View this email in your browser here.
The Brookings Papers on Economic Activity

Friends and Colleagues,

We spent Thursday and Friday of last week sitting at Brookings, discussing six new papers with dozens of the world’s top economists and readying the findings to be published in our economics journal, the Brookings Papers on Economic Activity (BPEA).

One of the great things about this twice-yearly conference is that, in the spirit of true academic discussion, it often raises as many questions as it answers.

Here are six things we wanted to share from inside our discussion room:

1. “If this is our technological future, economists aren’t sure it adds up to much.” The Washington Post’s Wonkblog has a great summary of important new research on why we can’t blame the ongoing productivity decline on our inability to measure the benefits of the Internet and other technological innovations.

2. A group of Fed economists challenged what renowned economists Piketty, Saez and others say about the richest 1%. The blue line in the chart below represents the new BPEA estimates. The blue line is still rising—but a lot more slowly. The authors ultimately conclude that wealth and income concentration is rising by about half as much as previously thought.

incomeshare_email.png

3. We debated whether federal lending programs served as a “shadow stimulus.” (h/t Wall Street Journal on the apt phrasing.) These programs, especially housing and student loans, grew dramatically during the Great Recession. There was a lively discussion around a finding that the government’s housing and education credit programs were nearly as large as the 2009 stimulus act (ARRA) and on average three times more effective per dollar of cost at stimulating the economy.

4. Boys whose mothers did not complete high school are even more likely to drop out of high school themselves—if they live in areas with high income inequality. Typical explanations, like school quality, don’t account for this finding. The boys’ academic attainment explains part of it, though, reinforcing the view that interventions to get kids on track early may break the link between inequality and low mobility. This interactive map illustrates the point well.

5. American workers are moving around the labor market less and less, and it’s not because of disruptive technologies. This decline is pervasive across losing a job, finding a job, dropping out of the labor force, and moving from one job to another. The “fluidity rate” has been declining for at least three decades, but a closer look at the rate in different U.S. states shows that the decline in fluidity was smaller in states with more workers in routine jobs displaced by technological advancements. See the chart here.

6. If you’ve ever lived through hyperinflation, you know that very poor people are by necessity very sophisticated about inflation and exchange rates. That’s an observation from a conference participant, but it helps explain a finding that the average Argentinian wasn’t fooled by the government’s notorious manipulation of inflation data from 2007- 2013. David Wessel has moreon this “interesting question…[of] how much public perceptions matter.” As the Fed worries about inflation expectations going forward, the lesson from Argentina is that the general public can be very sophisticated when the stakes get high.

 

If you want to know more about BPEA or the new research submitted to this edition of the journal,visit BPEA on the Brookings website. We’ll be back in the fall with more new findings from leading economists.

 

Sincerely,
Janice Eberly and James Stock
Co-editors, Brookings Papers on Economic Activity
Nonresident Senior Fellows, Economic Studies at Brookings

SOURCE

From: “Janice Eberly and Jim Stock, Brookings Institution” <economicstudies@brookings.edu>

Reply-To: <economicstudies@brookings.edu>

Date: Monday, March 14, 2016 at 1:40 PM

To: Aviva Lev-Ari <AvivaLev-Ari@alum.berkeley.edu>

Subject: Challenging Piketty, a “Shadow Stimulus,” and other BPEA Findings

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@pharma_BI

e-Mail: avivalev-ari@alum.berkeley.edu

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Metformin and vitamin B12 deficiency?

Larry H. Bernstein, MD, FCAP, Curator

LPBI

 

Years of taking popular diabetes drug tied to risk of B12 deficiency

 

Long-term Metformin Use and Vitamin B12 Deficiency in the Diabetes Prevention Program Outcomes Study

 

Metformin linked to vitamin B12 deficiency

David Holmes   Nature Reviews Endocrinology(2016)    http://dx.doi.org:/10.1038/nrendo.2016.39

Secondary analysis of data from the Diabetes Prevention Program Outcomes Study (DPPOS), one of the largest and longest studies of metformin treatment in patients at high risk of developing type 2 diabetes mellitus, shows that long-term use of metformin is associated with vitamin B12deficiency.

Aroda, V. R. et al. Long-term metformin use and vitamin B12 deficiency in the Diabetes Prevention Program Outcomes Study. J. Clin. Endocrinol. Metab. http://dx.doi.org/10.1210/jc.2015-3754 (2016)

 

Long-term Follow-up of Diabetes Prevention Program Shows Continued Reduction in Diabetes Development

http://www.diabetes.org/newsroom/press-releases/2014/long-term-follow-up-of-diabetes-prevention-program-shows-reduction-in-diabetes-development.html

San Francisco, California
June 16, 2014

Treatments used to decrease the development of type 2 diabetes continue to be effective an average of 15 years later, according to the latest findings of the Diabetes Prevention Program Outcomes Study, a landmark study funded by the National Institutes of Health (NIH).

The results, presented at the American Diabetes Association’s 74th Scientific Sessions®, come more than a decade after the Diabetes Prevention Program, or DPP, reported its original findings. In 2001, after an average of three years of study, the DPP announced that the study’s two interventions, a lifestyle program designed to reduce weight and increase activity levels and the diabetes medicinemetformin, decreased the development of type 2 diabetes in a diverse group of people, all of whom were at high risk for the disease, by 58 and 31 percent, respectively, compared with a group taking placebo.

The Diabetes Prevention Program Outcomes Study, or DPPOS, was conducted as an extension of the DPP to determine the longer-term effects of the two interventions, including further reduction in diabetes development and whether delaying diabetes would reduce the development of the diabetes complications that can lead to blindness, kidney failure, amputations and heart disease. Funded largely by the NIH’s National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK), the new findings show that the lifestyle intervention and metformin treatment have beneficial effects, even years later, but did not reduce microvascular complications.

Delaying Type 2 Diabetes

Participants in the study who were originally assigned to the lifestyle intervention and metformin during DPP continued to have lower rates of type 2 diabetes development than those assigned to placebo, with 27 percent and 17 percent reductions, respectively, after 15 years.

“What we’re finding is that we can prevent or delay the onset of type 2 diabetes, a chronic disease, through lifestyle intervention or with metformin, over a very long period of time,” said David M. Nathan, MD, Chairman of the DPP/DPPOS and Professor of Medicine at Harvard Medical School. “After the initial randomized treatment phase in DPP, all participants were offered lifestyle intervention and the rates of diabetes development fell in the metformin and former placebo groups, leading to a reduction in the treatment group differences over time.  However, the lifestyle intervention and metformin are still quite effective at delaying, if not preventing, type 2 diabetes,” Dr. Nathan said. Currently, an estimated 79 million American adults are at high-risk for developing type 2 diabetes.

Microvascular Complications
The DPPOS investigators followed participants for an additional 12 years after the end of the DPP to determine both the extent of diabetes prevention over time and whether the study treatments would also decrease the small vessel -or microvascular- complications, such as eye, nerve and kidney disease. These long-term results did not demonstrate significant differences among the lifestyle intervention, metformin or placebo groups on the microvascular complications, reported Kieren Mather, MD, Professor of Medicine at Indiana University School of Medicine and a study investigator.

“However, regardless of type of initial treatment, participants who didn’t develop diabetes had a 28 percent lower occurrence of the microvascular complications than those participants who did develop diabetes. These findings show that intervening in the prediabetes phase is important in reducing early stage complications,” Dr. Mather noted. The absence of differences in microvascular complications among the intervention groups may be explained by the small differences in average glucose levels among the groups at this stage of follow-up.

Risk for Cardiovascular Disease

The DPP population was relatively young and healthy at the beginning of the study, and few participants had experienced any severe cardiovascular events, such as heart attack or stroke, 15 years later. The relatively small number of events meant that the DPPOS researchers could not test the effects of interventions on cardiovascular disease. However, the research team did examine whether the study interventions, or a delay in the onset of type 2 diabetes, improved cardiovascular risk factors.

“We found that cardiovascular risk factors, such as hypertension, are generally improved by the lifestyle intervention and somewhat less by metformin,” said Ronald Goldberg, MD, Professor of Medicine at the University of Miami and one of the DPPOS investigators. “We know that people with type 2 diabetes are at much higher risk for heart disease and stroke than those who do not have diabetes, so a delay in risk factor development or improvement in risk factors may prove to be beneficial.”

Long-term Results with Metformin

The DPP/DPPOS is the largest and longest duration study to examine the effects of metformin, an inexpensive, well-known and generally safe diabetes medicine, in people who have not been diagnosed with diabetes. For DPPOS participants, metformin treatment was associated with a modest degree of long-term weight loss. “Other than a small increase in vitamin B-12 deficiency, which is a recognized consequence of metformin therapy, it has been extremely safe and well-tolerated over the 15 years of our study,” said Jill Crandall, MD, Professor of Medicine at Albert Einstein College of Medicine and a DPPOS investigator. “Further study will help show whether metformin has beneficial effects on heart disease and cancer, which are both increased in people with type 2 diabetes.”

Looking to the Future

In addition to the current findings, the DPPOS includes a uniquely valuable population that can help researchers understand the clinical course of type 2 diabetes.  Since the participants did not have diabetes at the beginning of the DPP, for those who have developed diabetes, the data show precisely when they developed the disease, which is rare in previous studies. “The DPP and DPPOS have given us an incredible wealth of information by following a very diverse group of people with regard to race and age as they have progressed from prediabetes to diabetes,” said Judith Fradkin, MD, Director of the NIDDK Division of Diabetes, Endocrinology and Metabolic Diseases. “The study provides us with an opportunity to make crucial discoveries about the clinical course of type 2 diabetes.”

Dr. Fradkin noted that the study population held promise for further analyses because researchers would now be able to examine how developing diabetes at different periods of life may cause the disease to progress differently. “We can look at whether diabetes behaves differently if you develop it before the age of 50 or after the age of 60,” she said. “Thanks to the large and diverse population of DPPOS that has remained very loyal to the study, we will be able to see how and when complications first develop and understand how to intervene most effectively.”

She added that NIDDK had invited the researchers to submit an application for a grant to follow the study population for an additional 10 years.

The Diabetes Prevention Program Outcomes Study was funded under NIH grant U01DK048489 by the NIDDK; National Institute on Aging; National Cancer Institute; National Heart, Lung, and Blood Institute; National Eye Institute; National Center on Minority Health and Health Disparities; and the Office of the NIH Director; Eunice Kennedy Shriver National Institute of Child Health and Human Development; Office of Research on Women’s Health; and Office of Dietary Supplements, all part of the NIH, as well as the Indian Health Service, Centers for Disease Control and Prevention and American Diabetes Association. Funding in the form of supplies was provided by Merck Sante, Merck KGaA and LifeScan.

The American Diabetes Association is leading the fight to Stop Diabetes® and its deadly consequences and fighting for those affected by diabetes. The Association funds research to prevent, cure and manage diabetes; delivers services to hundreds of communities; provides objective and credible information; and gives voice to those denied their rights because of diabetes. Founded in 1940, our mission is to prevent and cure diabetes and to improve the lives of all people affected by diabetes. For more information please call the American Diabetes Association at 1-800-DIABETES (1-800-342-2383) or visit http://www.diabetes.org. Information from both these sources is available in English and Spanish.

Association of Biochemical B12Deficiency With Metformin Therapy and Vitamin B12Supplements  

The National Health and Nutrition Examination Survey, 1999–2006

Lael ReinstatlerYan Ping QiRebecca S. WilliamsonJoshua V. Garn, and Godfrey P. Oakley Jr.
Diabetes Care February 2012 vol. 35 no. 2 327-333 
     http://dx.doi.org:/10.2337/dc11-1582

OBJECTIVE To describe the prevalence of biochemical B12deficiency in adults with type 2 diabetes taking metformin compared with those not taking metformin and those without diabetes, and explore whether this relationship is modified by vitamin B12supplements.

RESEARCH DESIGN AND METHODS Analysis of data on U.S. adults ≥50 years of age with (n = 1,621) or without type 2 diabetes (n = 6,867) from the National Health and Nutrition Examination Survey (NHANES), 1999–2006. Type 2 diabetes was defined as clinical diagnosis after age 30 without initiation of insulin therapy within 1 year. Those with diabetes were classified according to their current metformin use. Biochemical B12 deficiency was defined as serum B12concentrations ≤148 pmol/L and borderline deficiency was defined as >148 to ≤221 pmol/L.

RESULTS Biochemical B12 deficiency was present in 5.8% of those with diabetes using metformin compared with 2.4% of those not using metformin (P = 0.0026) and 3.3% of those without diabetes (P = 0.0002). Among those with diabetes, metformin use was associated with biochemical B12 deficiency (adjusted odds ratio 2.92; 95% CI 1.26–6.78). Consumption of any supplement containing B12 was not associated with a reduction in the prevalence of biochemical B12deficiency among those with diabetes, whereas consumption of any supplement containing B12 was associated with a two-thirds reduction among those without diabetes.

CONCLUSIONS Metformin therapy is associated with a higher prevalence of biochemical B12 deficiency. The amount of B12recommended by the Institute of Medicine (IOM) (2.4 μg/day) and the amount available in general multivitamins (6 μg) may not be enough to correct this deficiency among those with diabetes.

It is well known that the risks of both type 2 diabetes and B12deficiency increase with age (1,2). Recent national data estimate a 21.2% prevalence of diagnosed diabetes among adults ≥65 years of age and a 6 and 20% prevalence of biochemical B12 deficiency (serum B12<148 pmol/L) and borderline deficiency (serum B12 ≥148–221 pmol/L) among adults ≥60 years of age (3,4).

The diabetes drug metformin has been reported to cause a decrease in serum B12 concentrations. In the first efficacy trial, DeFronzo and Goodman (5) demonstrated that although metformin offers superior control of glycosylated hemoglobin levels and fasting plasma glucose levels compared with glyburide, serum B12 concentrations were lowered by 22% compared with placebo, and 29% compared with glyburide therapy after 29 weeks of treatment. A recent, randomized control trial designed to examine the temporal relationship between metformin and serum B12 found a 19% reduction in serum B12 levels compared with placebo after 4 years (6). Several other randomized control trials and cross-sectional surveys reported reductions in B12ranging from 9 to 52% (716). Although classical B12 deficiency presents with clinical symptoms such as anemia, peripheral neuropathy, depression, and cognitive impairment, these symptoms are usually absent in those with biochemical B12 deficiency (17).

Several researchers have made recommendations to screen those with type 2 diabetes on metformin for serum B12 levels (6,7,1416,1821). However, no formal recommendations have been provided by the medical community or the U.S. Prevention Services Task Force. High-dose B12 injection therapy has been successfully used to correct the metformin-induced decline in serum B12 (15,21,22). The use of B12supplements among those with type 2 diabetes on metformin in a nationally representative sample and their potentially protective effect against biochemical B12 deficiency has not been reported. It is therefore the aim of the current study to use the nationally representative National Health and Nutrition Examination Survey (NHANES) population to determine the prevalence of biochemical B12deficiency among those with type 2 diabetes ≥50 years of age taking metformin compared with those with type 2 diabetes not taking metformin and those without diabetes, and to explore how these relationships are modified by B12 supplement consumption.

Design overview

NHANES is a nationally representative sample of the noninstitutionalized U.S. population with targeted oversampling of U.S. adults ≥60 years of age, African Americans, and Hispanics. Details of these surveys have been described elsewhere (23). All participants gave written informed consent, and the survey protocol was approved by a human subjects review board.

Setting and participants

Our study included adults ≥50 years of age from NHANES 1999–2006. Participants with positive HIV antibody test results, high creatinine levels (>1.7 mg/dL for men and >1.5 mg/dL for women), and prescription B12 injections were excluded from the analysis. Participants who reported having prediabetes or borderline diabetes (n = 226) were removed because they could not be definitively grouped as having or not having type 2 diabetes. We also excluded pregnant women, those with type 1 diabetes, and those without diabetes taking metformin. Based on clinical aspects described by the American Diabetes Association and previous work in NHANES, those who were diagnosed before the age of 30 and began insulin therapy within 1 year of diagnosis were classified as having type 1 diabetes (24,25). Type 2 diabetes status in adults was dichotomized as yes/no. Participants who reported receiving a physician’s diagnosis after age 30 (excluding gestational diabetes) and did not initiate insulin therapy within 1 year of diagnosis were classified as having type 2 diabetes.

Outcomes and follow-up

The primary outcome was biochemical B12 deficiency determined by serum B12 concentrations. Serum B12 levels were quantified using the Quantaphase II folate/vitamin B12 radioassay kit from Bio-Rad Laboratories (Hercules, CA). We defined biochemical B12 deficiency as serum levels ≤148 pmol/L, borderline deficiency as serum B12 >148 to ≤221 pmol/L, and normal as >221 pmol/L (26).

The main exposure of interest was metformin use. Using data collected in the prescription medicine questionnaire, those with type 2 diabetes were classified as currently using metformin therapy (alone or in combination therapy) versus those not currently using metformin. Length of metformin therapy was used to assess the relationship between duration of metformin therapy and biochemical B12 deficiency. In the final analysis, two control groups were used to allow the comparison of those with type 2 diabetes taking metformin with those with type 2 diabetes not taking metformin and those without diabetes.

To determine whether the association between metformin and biochemical B12 deficiency is modified by supplemental B12 intake, data from the dietary supplement questionnaire were used. Information regarding the dose and frequency was used to calculate average daily supplemental B12 intake. We categorized supplemental B12 intake as 0 μg (no B12 containing supplement), >0–6 μg, >6–25 μg, and >25 μg. The lower intake group, >0–6 μg, includes 6 μg, the amount of vitamin B12 typically found in over-the-counter multivitamins, and 2.4 μg, the daily amount the IOM recommends for all adults ≥50 years of age to consume through supplements or fortified food (1). The next group, >6–25 μg, includes 25 μg, the amount available in many multivitamins marketed toward senior adults. The highest group contains the amount found in high-dose B-vitamin supplements.

 

In the final analysis, there were 575 U.S. adults ≥50 years of age with type 2 diabetes using metformin, 1,046 with type 2 diabetes not using metformin, and 6,867 without diabetes. The demographic and biological characteristics of the groups are shown in Table 1. Among metformin users, mean age was 63.4 ± 0.5 years, 50.3% were male, 66.7% were non-Hispanic white, and 40.7% used a supplement containing B12. The median duration of metformin use was 5 years. Compared with those with type 2 diabetes not taking metformin, metformin users were younger (P < 0.0001), reported a lower prevalence of insulin use (P < 0.001), and had a shorter duration of diabetes (P = 0.0207). Compared with those without diabetes, metformin users had a higher proportion of nonwhite racial groups (P< 0.0001), a higher proportion of obesity (P < 0.0001), a lower prevalence of macrocytosis (P = 0.0017), a lower prevalence of supplemental folic acid use (P = 0.0069), a lower prevalence of supplemental vitamin B12 use (P = 0.0180), and a lower prevalence of calcium supplement use (P = 0.0002). There was a twofold difference in the prevalence of anemia among those with type 2 diabetes versus those without, and no difference between the groups with diabetes.    

Association of Biochemical B12Deficiency With Metformin Therapy and Vitamin B12Supplements

Demographic and biological characteristics of U.S. adults ≥50 years of age: NHANES 1999–2006

Table 1
The geometric mean serum B12 concentration among those with type 2 diabetes taking metformin was 317.5 pmol/L. This was significantly lower than the geometric mean concentration in those with type 2 diabetes not taking metformin (386.7 pmol/L; P = 0.0116) and those without diabetes (350.8 pmol/L; P = 0.0011). As seen in Fig. 1, the weighted prevalence of biochemical B12 deficiency adjusted for age, race, and sex was 5.8% for those with type 2 diabetes taking metformin, 2.2% for those with type 2 diabetes not taking metformin (P = 0.0002), and 3.3% for those without diabetes (P = 0.0026). Among the three aforementioned groups, borderline deficiency was present in 16.2, 5.5, and 8.8%, respectively (P < 0.0001). Applying the Fleiss formula for calculating attributable risk from cross-sectional data (27), among all of the cases of biochemical B12 deficiency, 3.5% of the cases were attributable to metformin use; and among those with diabetes, 41% of the deficient cases were attributable to metformin use. When the prevalence of biochemical B12 deficiency among those with diabetes taking metformin was analyzed by duration of metformin therapy, there was no notable increase in the prevalence of biochemical B12 deficiency as the duration of metformin use increased. The prevalence of biochemical B12 deficiency was 4.1% among those taking metformin <1 year, 6.3% among those taking metformin ≥1–3 years, 4.1% among those taking metformin >3–10 years, and 8.1% among those taking metformin >10 years (P = 0.3219 for <1 year vs. >10 years). Similarly, there was no clear increase in the prevalence of borderline deficiency as the duration of metformin use increased (15.9% among those taking metformin >10 years vs. 11.4% among those taking metformin <1 year; P = 0.4365).
Figure 1
Weighted prevalence of biochemical B12 deficiency and borderline deficiency adjusted for age, race, and sex in U.S. adults ≥50 years of age: NHANES 1999–2006. Black bars are those with type 2 diabetes on metformin, gray bars are those with type 2 diabetes not on metformin, and the white bars are those without diabetes. *P = 0.0002 vs. type 2 diabetes on metformin. †P < 0.0001 vs. type 2 diabetes on metformin. ‡P = 0.0026 vs. type 2 diabetes on metformin.
Table 2 presents a stratified analysis of the weighted prevalence of biochemical B12 deficiency and borderline deficiency by B12supplement use. For those without diabetes, B12 supplement use was associated with an ∼66.7% lower prevalence of both biochemical B12deficiency (4.8 vs. 1.6%; P < 0.0001) and borderline deficiency (16.6 vs. 5.5%; P < 0.0001). A decrease in the prevalence of biochemical B12deficiency was seen at all levels of supplemental B12 intake compared with nonusers of supplements. Among those with type 2 diabetes taking metformin, supplement use was not associated with a decrease in the prevalence of either biochemical B12 deficiency (5.6 vs. 5.3%; P= 0.9137) or borderline deficiency (15.5 vs. 8.8%; P = 0.0826). Among the metformin users who also used supplements, those who consumed >0–6 μg of B12 had a prevalence of biochemical B12 deficiency of 14.1%. However, consumption of a supplement containing >6 μg of B12 was associated with a prevalence of biochemical B12 deficiency of 1.8% (P = 0.0273 for linear trend). Similar trends were seen in the association of supplemental B12 intake and the prevalence of borderline deficiency. For those with type 2 diabetes not taking metformin, supplement use was also not associated with a decrease in the prevalence of biochemical B12 deficiency (2.1 vs. 2.0%; P = 0.9568) but was associated with a 54% reduction in the prevalence of borderline deficiency (7.8 vs. 3.4%; P = 0.0057 for linear trend).
Table 2
Comparison of average daily B12 supplement intake by weighted prevalence of biochemical B12 deficiency (serum B12 ≤148 pmol/L) and borderline deficiency (serum B12 >148 to ≤221 pmol/L) among U.S. adults ≥50 years of age: NHANES 1999–2006.
Table 3 demonstrates the association of various risk factors with biochemical B12 deficiency. Metformin therapy was associated with biochemical B12 deficiency (odds ratio [OR] 2.89; 95% CI 1.33–6.28) and borderline deficiency (OR 2.32; 95% CI 1.31–4.12) in a crude model (results not shown). After adjusting for age, BMI, and insulin and supplement use, metformin maintained a significant association with biochemical B12 deficiency (OR 2.92; 95% CI 1.28–6.66) and borderline deficiency (OR 2.16; 95% CI 1.22–3.85). Similar to Table 2, B12 supplements were protective against borderline (OR 0.43; 95% CI 0.23–0.81), but not biochemical, B12 deficiency (OR 0.76; 95% CI 0.34–1.70) among those with type 2 diabetes. Among those without diabetes, B12 supplement use was ∼70% protective against biochemical B12 deficiency (OR 0.26; 95% CI 0.17–0.38) and borderline deficiency (OR 0.27; 95% CI 0.21–0.35).
Table 3
Polytomous logistic regression for potential risk factors of biochemical B12 deficiency and borderline deficiency among U.S. adults ≥50 years of age: NHANES 1999–2006, OR (95% CI)

The IOM has highlighted the detection and diagnosis of B12 deficiency as a high-priority topic for research (1). Our results suggest several findings that add to the complexity and importance of B12 research and its relation to diabetes, and offer new insight into the benefits of B12 supplements. Our data confirm the relationship between metformin and reduced serum B12 levels beyond the background prevalence of biochemical B12 deficiency. Our data demonstrate that an intake of >0–6 μg of B12, which includes the dose most commonly found in over-the-counter multivitamins, was associated with a two-thirds reduction of biochemical B12 deficiency and borderline deficiency among adults without diabetes. This relationship has been previously reported with NHANES and Framingham population data (4,29). In contrast, we did not find that >0–6 μg of B12 was associated with a decrease in the prevalence of biochemical B12 deficiency or borderline deficiency among adults with type 2 diabetes taking metformin. This observation suggests that metformin reduces serum B12 by a mechanism that is additive to or different from the mechanism in older adults. It is also possible that metformin may exacerbate the deficiency among older adults with low serum B12. Our sample size was too small to determine which amount >6 μg was associated with maximum protection, but we did find a dose-response trend.

We were surprised to find that those with type 2 diabetes not using metformin had the lowest prevalence of biochemical B12 deficiency. It is possible that these individuals may seek medical care more frequently than the general population and therefore are being treated for their biochemical B12 deficiency. Or perhaps, because this population had a longer duration of diabetes and a higher proportion of insulin users compared with metformin users, they have been switched from metformin to other diabetic treatments due to low serum B12 concentrations or uncontrolled glucose levels and these new treatments may increase serum B12 concentrations. Despite the observed effects of metformin on serum B12 levels, it remains unclear whether or not this reduction is a public health concern. With lifetime risks of diabetes estimated to be one in three and with metformin being a first-line intervention, it is important to increase our understanding of the effects of oral vitamin B12 on metformin-associated biochemical deficiency (20,21).

The strengths of this study include its nationally representative, population-based sample, its detailed information on supplement usage, and its relevant biochemical markers. This is the first study to use a nationally representative sample to examine the association between serum B12 concentration, diabetes status, and metformin use as well as examine how this relationship may be modified by vitamin B12 supplementation. The data available regarding supplement usage provided specific information regarding dose and frequency. This aspect of NHANES allowed us to observe the dose-response relationship in Table 2 and to compare it within our three study groups.

This study is also subject to limitations. First, NHANES is a cross-sectional survey and it cannot assess time as a factor, and therefore the results are associations and not causal relationships. A second limitation arises in our definition of biochemical B12 deficiency. There is no general consensus on how to define normal versus low serum B12levels. Some researchers include the functional biomarker methylmalonic acid (MMA) in the definition, but this has yet to be agreed upon (3034). Recently, an NHANES roundtable discussion suggested that definitions of biochemical B12 deficiency should incorporate one biomarker (serum B12 or holotranscobalamin) and one functional biomarker (MMA or total homocysteine) to address problems with sensitivity and specificity of the individual biomarkers. However, they also cited a need for more research on how the biomarkers are related in the general population to prevent misclassification (34). MMA was only measured for six of our survey years; one-third of participants in our final analysis were missing serum MMA levels. Moreover, it has recently been reported that MMA values are significantly greater among the elderly with diabetes as compared with the elderly without diabetes even when controlling for serum B12 concentrations and age, suggesting that having diabetes may independently increase the levels of MMA (35). This unique property of MMA in elderly adults with diabetes makes it unsuitable as part of a definition of biochemical B12 deficiency in our specific population groups. Our study may also be subject to misclassification bias. NHANES does not differentiate between diabetes types 1 and 2 in the surveys; our definition may not capture adults with type 2 diabetes exclusively. Additionally, we used responses to the question “Have you received a physician’s diagnosis of diabetes” to categorize participants as having or not having diabetes. Therefore, we failed to capture undiagnosed diabetes. Finally, we could only assess current metformin use. We cannot determine if nonmetformin users have ever used metformin or if they were not using it at the time of the survey.

Our data demonstrate several important conclusions. First, there is a clear association between metformin and biochemical B12 deficiency among adults with type 2 diabetes. This analysis shows that 6 μg of B12 offered in most multivitamins is associated with two-thirds reduction in biochemical B12 deficiency in the general population, and that this same dose is not associated with protection against biochemical B12 deficiency among those with type 2 diabetes taking metformin. Our results have public health and clinical implications by suggesting that neither 2.4 μg, the current IOM recommendation for daily B12 intake, nor 6 μg, the amount found in most multivitamins, is sufficient for those with type 2 diabetes taking metformin.

This analysis suggests a need for further research. One research design would be to identify those with biochemical B12 deficiency and randomize them to receive various doses of supplemental B12chronically and then evaluate any improvement in serum B12concentrations and/or clinical outcomes. Another design would use existing cohorts to determine clinical outcomes associated with biochemical B12 deficiency and how they are affected by B12supplements at various doses. Given that a significant proportion of the population ≥50 years of age have biochemical B12 deficiency and that those with diabetes taking metformin have an even higher proportion of biochemical B12 deficiency, we suggest that support for further research is a reasonable priority.

 

Discussion:
One research design would be to identify those with biochemical B12 deficiency and randomize them to receive various doses of supplemental B12chronically and then evaluate any improvement in serum B12concentrations and/or clinical outcomes. Another design would use existing cohorts to determine clinical outcomes associated with biochemical B12 deficiency and how they are affected by B12supplements at various doses.
This is of considerable interest.  As far as I can see, there is insufficient data presented to discern all of the variables entangled.  In a study of 8000 hemograms several years ago, it was of some interest that there were a large percentage of patients who were over age 75 years having a MCV of 94 – 100, not considered indicative of macrocytic anemia.  It would have been interesting to explore that set of the data further.
UPDATED 3/17/2020
 2019 May 7;11(5). pii: E1020. doi: 10.3390/nu11051020.

Monitoring Vitamin B12 in Women Treated with Metformin for Primary Prevention of Breast Cancer and Age-Related Chronic Diseases.

Abstract

Metformin (MET) is currently being used in several trials for cancer prevention or treatment in non-diabetics. However, long-term MET use in diabetics is associated with lower serum levels of total vitamin B12. In a pilot randomized controlled trial of the Mediterranean diet (MedDiet) and MET, whose participants were characterized by different components of metabolic syndrome, we tested the effect of MET on serum levels of B12, holo transcobalamin II (holo-TC-II), and methylmalonic acid (MMA). The study was conducted on 165 women receiving MET or placebo for three years. Results of the study indicate a significant overall reduction in both serum total B12 and holo-TC-II levels according with MET-treatment. In particular, in the MET group 26 of 81 patients and 10 of the 84 placebo-treated subjects had B12 below the normal threshold (<221 pmol/L) at the end of the study. Considering jointly all B12, Holo-TC-II, and MMA, 13 of the 165 subjects (10 MET and 3 placebo-treated) had at least two deficits in the biochemical parameters at the end of the study, without reporting clinical signs. Although our results do not affect whether women remain in the trial, B12 monitoring for MET-treated individuals should be implemented.

ntroduction

Metformin (MET) is the first-line treatment for type-2 diabetes and has been used for decades to treat this chronic condition [1]. Given its favorable effects on glycemic control, weight patterns, insulin requirements, and cardiovascular outcomes, MET has been recently proposed in addition to lifestyle interventions to reduce metabolic syndrome (MS) and age-related chronic diseases [2]. Observational studies have also suggested that diabetic patients treated with MET had a significantly lower risk of developing cancer or lower cancer mortality than those untreated or treated with other drugs [3,4]. For this reason, a number of clinical trials are in progress in different solid cancers.
One of the limitations in implementing long-term use of MET to prevent chronic conditions in healthy subjects relates to its potential lowering effect on vitamin B12 (B12). The aim of the present study was to assess the effect of three years of MET treatment in a randomized, controlled trial considering both B12 levels and biomarkers of its metabolism and biological effectiveness.
Cobalamin, also known as B12, is a water-soluble, cobalt-containing vitamin. All forms of B12 are converted intracellularly into adenosyl-Cbl and methylcobalamin—the biologically active forms at the cellular level [5]. Vitamin B12 is a vital cofactor of two enzymes: methionine synthase and L-methyl-malonyl-coenzyme. A mutase in intracellular enzymatic reactions related to DNA synthesis, as well as in amino and fatty acid metabolism. Vitamin B12, under the catalysis of the enzyme l-methyl-malonyl-CoA mutase, synthesizes succinyl-CoA from methylmalonyl-CoA in the mitochondria. Deficiency of B12, thus results in elevated methylmalonic acid (MMA) levels.
Dietary B12 is normally bound to proteins. Food-bound B12 is released in the stomach under the effect of gastric acid and pepsin. The free vitamin is then bound to an R-binder, a glycoprotein in gastric fluid and saliva that protects B12 from the highly acidic stomach environment. Pancreatic proteases degrade R-binder in the duodenum and liberate B12; finally, the free vitamin is then bound by the intrinsic factor (IF)—a glycosylated protein secreted by gastric parietal cells—forming an IF-B12 complex [6]. The IF resists proteolysis and serves as a carrier for B12 to the terminal ileum where the IF-B12 complex undergoes receptor (cubilin)-mediated endocytosis [7]. The vitamin then appears in circulation bound to holo-transcobalamin-I (holo-TC-I), holo-transcobalamin-II (holo-TC-II), and holo-transcobalamin-III (holo-TC-III). It is estimated that 20–30% of the total circulating B12 is bound to holo-TC-II and only this form is available to the cells [7]. Holo-TC-I binds 70–80% of circulating B12, preventing the loss of the free unneeded portion [6]. Vitamin B12 is stored mainly in the liver and kidneys.
Many mechanisms have been proposed to explain how MET interferes with the absorption of B12: diminished absorption due to changes in bacterial flora, interference with intestinal absorption of the IF–B12 complex (and)/or alterations in IF levels. The most widely accepted current mechanism suggests that MET antagonizes the calcium cation and interferes with the calcium-dependent IF–B12 complex binding to the ileal cubilin receptor [8,9]. The recognition and treatment of B12 deficiency is important because it is a cause of bone marrow failure, macrocytic anemia, and irreversible neuropathy [10].
In general, previous studies on diabetics have observed a reduction in serum levels of B12 after both short- and long-term MET treatment [1]. A recent review on observational studies showed significantly lower levels of B12 and an increased risk of borderline or frank B12 deficiency in patients on MET than not on MET [1]. The meta-analysis of four trials (only one double-blind) found a significant overall mean B12 reducing effect of MET after six weeks to three months of use [1]. A secondary analysis (13 years after randomization) of the Diabetes Prevention Program Outcomes Study, which randomized over 3000 persons at high risk for type 2 diabetes to MET or placebo, showed a 13% increase in the risk of B12 deficiency per year of total MET use [3]. In this study, B12 levels were measured from samples obtained in years 1 and 9. Stored serum samples from other time points, including baseline, were not available, and potentially informative red blood cell indices that might have demonstrated the macrocytic anemia, typical of B12 deficiency, were not recorded [3]. The HOME (Hyperinsulinaemia: the Outcome of its Metabolic Effects) study, a large randomized controlled trial investigating the long-term effects of MET versus placebo in patients with type 2 diabetes treated with insulin, showed that the addition of MET improved glycemic control, reduced insulin requirements, prevented weight gain but lowered serum B12 over time, and raised serum homocysteine, suggesting tissue B12 deficiency [4]. A recent analysis of 277 diabetics from the same trial showed that serum levels of MMA, the specific biomarker for tissue B12 deficiency [5], were significantly higher in people treated with MET than those receiving placebo after four years (on average) [4].
The risk of MET-associated B12 deficiency may be higher in older individuals and those with poor dietary habits. Prospective studies have found negative associations between obesity and B12 in numerous ethnicities [11,12]. An energy-dense but micronutrient-insufficient diet consumed by individuals who are overweight or obese might explain this [12]. Furthermore, obesity is associated with low-grade inflammation and these physiological changes have been shown to be associated, in several studies, with elevated C-reactive protein and homocysteine and with low concentrations of B12 and other vitamins [13,14].
As part of a pilot randomized controlled trial of the Mediterranean diet (MedDiet) and MET for primary prevention of breast cancer and other chronic age-related diseases in healthy women with tracts of MS [15] we tested the effect of MET on serum levels of B12, holo-TC-II, and MMA.

Other articles of note on the Mediterranean Diet in this Online Open Access Scientific Journal Include

CB Insights’ list spotlights the top 100 venture capitalists; we have excerpted the top 20 here, along with a selection of their deals.

Reporter: Aviva Lev-Ari, PhD, RN

SOURCE

https://www.cbinsights.com/blog/top-venture-capital-partners/

http://www.nytimes.com/interactive/2016/03/13/technology/venture-capital-investor-top-20.html

 

1. Peter Fenton
Benchmark
GOT A PAYDAY FROM: Twitter, New Relic and Zendesk.

2. Fred Wilson
Union Square Ventures
GOT A PAYDAY FROM: Twitter, Tumblr and Etsy.

3. Chris Sacca
Lowercase Capital
GOT A PAYDAY FROM: Twitter and Instagram.

4. Josh Kopelman
First Round Capital
GOT A PAYDAY FROM: LinkedIn and OnDeck Capital.
5. Jim Goetz
Sequoia Capital
GOT A PAYDAY FROM: WhatsApp, Palo Alto Networks and Barracuda Networks.

6. Danny Rimer
Index Ventures
GOT A PAYDAY FROM: King Digital Entertainment, Etsy and Net-a-Porter.

7. Steve Anderson
Baseline Ventures
GOT A PAYDAY FROM: Instagram and ExactTarget.
8. Bill Gurley
Benchmark
GOT A PAYDAY FROM: GrubHub, OpenTable and Zillow.

9. Neil Shen
Sequoia Capital (China)
GOT A PAYDAY FROM: JD.com, Alibaba and Qihoo 360.

10. Scott Sandell
New Enterprise Associates
GOT A PAYDAY FROM: Workday, Tableau Software and Spreadtrum Communications.
11. Jim Breyer
Breyer Associates
GOT A PAYDAY FROM: Facebook, Etsy and Legendary Entertainment.

12. Peter Thiel
Founders Fund
GOT A PAYDAY FROM: Facebook, Yammer and Powerset.

13. Sir Michael Moritz
Sequoia Capital
GOT A PAYDAY FROM: LinkedIn and Zappos.
14. Mike Maples, Jr.
Floodgate
GOT A PAYDAY FROM: Twitter, Twitch.tv and Demandforce.

15. Marc Andreessen
Andreessen Horowitz
GOT A PAYDAY FROM: Skype (a deal that was led by his co-founder, Ben Horowitz) and Kno.

16. Aydin Senkut
Felicis Ventures
GOT A PAYDAY FROM: Meraki, Fitbit and Shopify.
17. Jenny Lee
GGV Capital
GOT A PAYDAY FROM: YY.com, Pactera Technology International and 21Vianet.

18. Roelof Botha
Sequoia Capital
GOT A PAYDAY FROM: Instagram and Square.

19. Brad Feld
Foundry Group
GOT A PAYDAY FROM: Zynga, Fitbit, MakerBot and Rally Software.

20. Rebecca Lynn
Canvas Ventures
GOT A PAYDAY FROM: Lending Club, FutureAdvisor and Check.

SOURCE

https://www.cbinsights.com/blog/top-venture-capital-partners/

http://www.nytimes.com/interactive/2016/03/13/technology/venture-capital-investor-top-20.html