Amandeep Kaur, BSc., MSc. – Research Associate 3, Medical Text Analysis and Synthetic Biology
https://pharmaceuticalintelligence.com/contributors-biographies/associates/amandeep-kaur-bsc-msc-9exp-5-2021-research-associate-2-medical-text-analysis-and-it-infrastructure-python-coder/
1. Publications on Pharmaceuticalintelligence.com
2. Progress on Text Analysis
6 June 2021
LPBI Phase 2: Proof of Concept – Genomics Volume 1- Chapter 2 Completion
Dropbox– Includes MS Word Files, Text Files, Biological Images File, WORD CLOUDs, Bar Graph and PPT
WORD CLOUDs Uploaded in Articles of Chapter 2
Article 2.2- https://pharmaceuticalintelligence.com/2013/02/15/dna-structure-and-oligonucleotides/
Article 2.4- https://pharmaceuticalintelligence.com/2013/02/14/genomics-and-evolution/
Article 2.6- https://pharmaceuticalintelligence.com/2013/05/15/the-binding-of-oligonucleotides-in-dna-and-3-d-lattice-structures/
23 May 2021
LPBI Phase 2: Proof of Concept – Genomics Volume 1- Chapter 1 Completion
Dropbox– Includes MS Word Files, Text Files, Biological Images File, WORD CLOUDs, Bar Graph and PPT
WORD CLOUDs Uploaded in Articles of Chapter 1
Article 1.1- https://pharmaceuticalintelligence.com/2013/02/08/the-initiation-and-growth-of-molecular-biology-and-genomics/
Article 1.2- https://pharmaceuticalintelligence.com/2013/02/12/cracking-the-code-of-human-life-milestones-along-the-way/
Article 1.3- https://pharmaceuticalintelligence.com/2012/08/27/dna-the-next-generation-storage-media-for-digital-information/
17 May 2021
LPBI Phase 2: Proof of Concept – Genomics Volume 1 – Chapter 21 Completion
Dropbox- Includes MS Word Files, Text Files, Biological Images File, WORD CLOUDs, Bar Graph and PPT
WORD CLOUDs Uploaded in Articles of Chapter 21:
Article 21.1 Introducing CRISPR/Cas9 Gene Editing Technology – Works by Jennifer A. Doudna
Article 21.1.2- https://pharmaceuticalintelligence.com/2014/03/25/evaluate-your-cas9-gene-editing-vectors-crisprcas-mediated-genome-engineering-is-your-crispr-grna-optimized-for-your-cell-lines/
Article 21.1.3- https://pharmaceuticalintelligence.com/2014/06/13/215-245-6132014-jennifer-doudna-the-biology-of-crisprs-from-genome-defense-to-genetic-engineering/
Article 21.1.4- https://pharmaceuticalintelligence.com/2014/06/16/prediction-of-the-winner-rna-technology-the-frontier-of-science-on-rna-biology-cancer-and-therapeutics-the-start-up-landscape-in-boston/
Article 21.2 CRISPR in Other Labs
Article 21.2.1- https://pharmaceuticalintelligence.com/2014/04/21/crispr-mit-genome-surgery/
Article 21.2.3- https://pharmaceuticalintelligence.com/2014/10/29/new-frontiers-in-gene-editing-transitioning-from-the-lab-to-the-clinic-february-19-20-2015-the-intercontinental-san-francisco-san-francisco-ca/
Article 21.2.4- https://pharmaceuticalintelligence.com/2014/03/27/gene-therapy-and-the-genetic-study-of-disease-berkeley-and-ucsf-new-dna-editing-technology-spawns-bold-uc-initiative-as-crispr-goes-global/
Article 21.3 Patents Awarded and Pending for CRISPR
Article 21.3.1- https://pharmaceuticalintelligence.com/2014/12/05/litigation-on-the-way-broad-institute-gets-patent-on-revolutionary-gene-editing-method/
Article 21.3.2- https://pharmaceuticalintelligence.com/2014/12/05/the-patents-for-crispr-the-dna-editing-technology-as-the-biggest-biotech-discovery-of-the-century/
Article 21.4 CRISPR/Cas9 Applications
Article 21.4.2- https://pharmaceuticalintelligence.com/2014/11/04/crispr-applications-for-autoimmune-diseases-ucsf/
Article 21.4.4- https://pharmaceuticalintelligence.com/2015/08/30/delineating-a-role-for-crispr-cas9-in-pharmaceutical-targeting/
Article 21.4.5- https://pharmaceuticalintelligence.com/2015/09/01/where-is-the-most-promising-avenue-to-success-in-pharmaceuticals-with-crispr-cas9/
Article 21.4.6- https://pharmaceuticalintelligence.com/2015/08/30/level-of-comfort-with-making-changes-to-the-dna-of-an-organism/
Article 21.4.8- https://pharmaceuticalintelligence.com/2015/09/02/crisprcas9-finds-its-way-as-an-important-tool-for-drug-discovery-development/
28 March 2021
Streamlined the WORKFLOW for MEDICAL TEXT ANALYSIS based on INSTRUCTIONS given by MADISON and MODIFIED by Aviva
The workflow is as Follows:
1. One MS Word file for All Articles in a chapter – Chapter’s subject CONTEXT as UNIT CASE for Text Analysis by NLP
2. One Text file for All Articles in a chapter – to be used for Wolfram NLP
3. One MS Word File Containing All the Biological Images with Article Name, Author, URL of All Articles in a chapter – to be use for uploading images to the Gallery of the NEW WEBSITE for 2.0 LPBI [under construction]
4. One MS Word file per Article – to be INDEXED for Blockchain Transactions Network
5. One Text file per Article – to be used for 2, above
6. One WordCloud per Article – Test Analysis visual #1
7. One Bar Diagram from Above option 1 (means All Articles) – Test Analysis visual #2
7.1 One Bar Diagram produced from 2, above – Text Analysis visual # 2.1 – Word frequency for Subject Context of the Chapter
8. One Wolfram Hyper-graph from Above option 1 (means All Articles) – Test Analysis visual #3
9. One Tree Diagram from Above option 1 (means All Articles) – Test Analysis visual #4
10. One PowerPoint Presentation PER CHAPTER containing WordClouds, bar diagrams, hyper-graphs, tree diagrams of i.e., Genomic Vol 1 (means All chapters) – Test Analysis visual #5
11. Domain Knowledge Expert Interpretations in English Text for 8, above – Test Analysis Interpretation of Hyper-graph in English Text File #6 [Place holder for Dr. Williams]
12. Domain Knowledge Expert Interpretations in English Text for 9, above – Test Analysis Interpretation of Tree Diagram in English Text File #7 [Place holder for Dr. Williams]
13. Translation of 11, above [Interpretation of Hyper-graph] into three languages each – Test Analysis Translation Texts
#8, #9, #10 [three place holders]
14. Translation of 12, above [Interpretation of Tree diagram] into three languages each – Test Analysis Translation Texts #11, #12, #13 [three place holders]